Gcaud8488.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8488.t1
Unique Name	Gcaud8488.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	362

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1141_length_13362_cov_4.300354	contig	NODE_1141_length_13362_cov_4.300354:10435..11638 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8488	Gcaud8488	Gracilaria caudata M_176_S67 male	gene	NODE_1141_length_13362_cov_4.300354 10435..11638 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8488.t1	Gcaud8488.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1141_length_13362_cov_4.300354 10435..11638 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8488.t1.stop1	Gcaud8488.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1141_length_13362_cov_4.300354 10435..10437 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8488.t1.CDS1	Gcaud8488.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1141_length_13362_cov_4.300354 10435..11239 -
Gcaud8488.t1.CDS2	Gcaud8488.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1141_length_13362_cov_4.300354 11358..11638 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8488.t1.exon1	Gcaud8488.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1141_length_13362_cov_4.300354 10435..11239 -
Gcaud8488.t1.exon2	Gcaud8488.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1141_length_13362_cov_4.300354 11358..11638 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8488.t1.intron1	Gcaud8488.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1141_length_13362_cov_4.300354 11240..11357 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8488.t1.start1	Gcaud8488.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1141_length_13362_cov_4.300354 11636..11638 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1141_length_13362_cov_4.300354:10435..11638-
coding sequence from alignment at NODE_1141_length_13362_cov_4.300354:10435..11638-

mRNA sequence

>Gcaud8488.t1 ID=Gcaud8488.t1|Name=Gcaud8488.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=362bp
MVISLDLHQNNLRRRQGPRSAFLQRSIVQCESTVEVLEVPDNTTEYEGVP
LGAIVTIVETEVPLRDSIEAAQRAMPACTGIFISPTQILSSAHCAYHHRQ
EEGEEPFWMYGDDNPQNTFLYAIAGKVNAVDRTFDVYNLVQGCIPQSYVD
AENEEVTSVMGNDLVVFEIEGRFAGDSQSVGTIASSVVYDVPHDYMLPQY
PSDVNDGRSLVIDKNTTPILFEPLGSGVFFSIELASWSGSSGGPIIDMNA
TRINGTPTVVGVLMSSGWEVCDSGIVTVTTGIPVVQGLIASTSNARNGRE
KGQGNESVSVNSKTPLVEQLAGPIAPVEASTEPLELLTFHSTQESDEYDV
IPMVSGDEQMV*

spliced messenger RNA

>Gcaud8488.t1 ID=Gcaud8488.t1|Name=Gcaud8488.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at NODE_1141_length_13362_cov_4.300354:10435..11638- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCATTTCTTTGGATTTACACCAAAACAACTTACGTCGAAGACAAGG
ACCAAGGTCAGCTTTTCTTCAGCGCTCAATTGTTCAATGTGAATCCACCG
TTGAAGTTCTAGAAGTACCTGACAATACAACAGAGTATGAAGGTGTTCCA
TTAGGCGCCATAGTAACTATTGTCGAAACAGAGGTTCCCCTTCGAGATTC
AATCGAAGCAGCCCAACGTGCGATGCCGGCCTGCACAGGGATCTTCATTT
CGCCCACCCAAATTCTATCTAGTGCTCACTGTGCATATCATCATCGGCAA
GAAGAGGGTGAAGAGCCATTCTGGATGTACGGAGATGACAATCCTCAAAA
TACTTTCCTTTACGCTATTGCGGGCAAAGTGAATGCCGTCGATAGGACAT
TCGATGTTTATAATCTTGTTCAAGGATGCATTCCGCAGTCTTATGTTGAT
GCTGAAAACGAGGAAGTCACAAGTGTCATGGGCAATGATTTAGTAGTCTT
CGAAATTGAAGGACGTTTTGCTGGAGACTCGCAGTCTGTAGGTACCATTG
CGTCATCTGTTGTTTATGACGTTCCACACGATTACATGCTACCTCAATAT
CCAAGCGATGTCAATGACGGGCGTAGTCTTGTAATCGACAAAAACACGAC
GCCAATCCTTTTTGAGCCTCTAGGTAGTGGGGTGTTTTTCTCGATTGAAT
TAGCATCCTGGTCAGGATCTTCGGGTGGTCCAATAATTGACATGAATGCA
ACGCGAATTAACGGAACGCCAACTGTTGTCGGAGTCCTGATGAGTTCAGG
GTGGGAAGTGTGTGACTCTGGTATCGTCACCGTAACAACTGGTATTCCAG
TCGTTCAGGGACTTATCGCGTCTACTTCCAATGCTAGAAATGGGAGAGAA
AAGGGCCAAGGAAATGAAAGTGTTTCCGTGAATTCGAAGACACCTCTTGT
TGAGCAACTTGCCGGCCCTATAGCTCCTGTTGAAGCAAGCACGGAGCCAT
TGGAATTATTGACCTTTCATAGCACACAAGAATCCGACGAATACGATGTT
ATTCCTATGGTTTCCGGTGATGAACAGATGGTATGA

protein sequence of Gcaud8488.t1

>Gcaud8488.t1 ID=Gcaud8488.t1|Name=Gcaud8488.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=362bp
MVISLDLHQNNLRRRQGPRSAFLQRSIVQCESTVEVLEVPDNTTEYEGVP
LGAIVTIVETEVPLRDSIEAAQRAMPACTGIFISPTQILSSAHCAYHHRQ
EEGEEPFWMYGDDNPQNTFLYAIAGKVNAVDRTFDVYNLVQGCIPQSYVD
AENEEVTSVMGNDLVVFEIEGRFAGDSQSVGTIASSVVYDVPHDYMLPQY
PSDVNDGRSLVIDKNTTPILFEPLGSGVFFSIELASWSGSSGGPIIDMNA
TRINGTPTVVGVLMSSGWEVCDSGIVTVTTGIPVVQGLIASTSNARNGRE
KGQGNESVSVNSKTPLVEQLAGPIAPVEASTEPLELLTFHSTQESDEYDV
IPMVSGDEQMV*

mRNA from alignment at NODE_1141_length_13362_cov_4.300354:10435..11638-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8488.t1 ID=Gcaud8488.t1|Name=Gcaud8488.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1204bp|location=Sequence derived from alignment at NODE_1141_length_13362_cov_4.300354:10435..11638- (Gracilaria caudata M_176_S67 male)
ATGGTCATTTCTTTGGATTTACACCAAAACAACTTACGTCGAAGACAAGG
ACCAAGGTCAGCTTTTCTTCAGCGCTCAATTGTTCAATGTGAATCCACCG
TTGAAGTTCTAGAAGTACCTGACAATACAACAGAGTATGAAGGTGTTCCA
TTAGGCGCCATAGTAACTATTGTCGAAACAGAGGTTCCCCTTCGAGATTC
AATCGAAGCAGCCCAACGTGCGATGCCGGCCTGCACAGGGATCTTCATTT
CGCCCACCCAAATTCTATCTAGTGCTCACTGGTAAGTTCTTCAGTTGAAC
ATTGTCCTGCTAACTGTCAAGCTTCCGCCGTGAAAGCACTGGGACTGGAA
AGAACAATGCCTAACAATCTATGTTCCCAATTTGATTCCCTGTCTGCAGT
GCATATCATCATCGGCAAGAAGAGGGTGAAGAGCCATTCTGGATGTACGG
AGATGACAATCCTCAAAATACTTTCCTTTACGCTATTGCGGGCAAAGTGA
ATGCCGTCGATAGGACATTCGATGTTTATAATCTTGTTCAAGGATGCATT
CCGCAGTCTTATGTTGATGCTGAAAACGAGGAAGTCACAAGTGTCATGGG
CAATGATTTAGTAGTCTTCGAAATTGAAGGACGTTTTGCTGGAGACTCGC
AGTCTGTAGGTACCATTGCGTCATCTGTTGTTTATGACGTTCCACACGAT
TACATGCTACCTCAATATCCAAGCGATGTCAATGACGGGCGTAGTCTTGT
AATCGACAAAAACACGACGCCAATCCTTTTTGAGCCTCTAGGTAGTGGGG
TGTTTTTCTCGATTGAATTAGCATCCTGGTCAGGATCTTCGGGTGGTCCA
ATAATTGACATGAATGCAACGCGAATTAACGGAACGCCAACTGTTGTCGG
AGTCCTGATGAGTTCAGGGTGGGAAGTGTGTGACTCTGGTATCGTCACCG
TAACAACTGGTATTCCAGTCGTTCAGGGACTTATCGCGTCTACTTCCAAT
GCTAGAAATGGGAGAGAAAAGGGCCAAGGAAATGAAAGTGTTTCCGTGAA
TTCGAAGACACCTCTTGTTGAGCAACTTGCCGGCCCTATAGCTCCTGTTG
AAGCAAGCACGGAGCCATTGGAATTATTGACCTTTCATAGCACACAAGAA
TCCGACGAATACGATGTTATTCCTATGGTTTCCGGTGATGAACAGATGGT
ATGA

Coding sequence (CDS) from alignment at NODE_1141_length_13362_cov_4.300354:10435..11638-

>Gcaud8488.t1 ID=Gcaud8488.t1|Name=Gcaud8488.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1086bp|location=Sequence derived from alignment at NODE_1141_length_13362_cov_4.300354:10435..11638- (Gracilaria caudata M_176_S67 male)
ATGGTCATTTCTTTGGATTTACACCAAAACAACTTACGTCGAAGACAAGG
ACCAAGGTCAGCTTTTCTTCAGCGCTCAATTGTTCAATGTGAATCCACCG
TTGAAGTTCTAGAAGTACCTGACAATACAACAGAGTATGAAGGTGTTCCA
TTAGGCGCCATAGTAACTATTGTCGAAACAGAGGTTCCCCTTCGAGATTC
AATCGAAGCAGCCCAACGTGCGATGCCGGCCTGCACAGGGATCTTCATTT
CGCCCACCCAAATTCTATCTAGTGCTCACTGTGCATATCATCATCGGCAA
GAAGAGGGTGAAGAGCCATTCTGGATGTACGGAGATGACAATCCTCAAAA
TACTTTCCTTTACGCTATTGCGGGCAAAGTGAATGCCGTCGATAGGACAT
TCGATGTTTATAATCTTGTTCAAGGATGCATTCCGCAGTCTTATGTTGAT
GCTGAAAACGAGGAAGTCACAAGTGTCATGGGCAATGATTTAGTAGTCTT
CGAAATTGAAGGACGTTTTGCTGGAGACTCGCAGTCTGTAGGTACCATTG
CGTCATCTGTTGTTTATGACGTTCCACACGATTACATGCTACCTCAATAT
CCAAGCGATGTCAATGACGGGCGTAGTCTTGTAATCGACAAAAACACGAC
GCCAATCCTTTTTGAGCCTCTAGGTAGTGGGGTGTTTTTCTCGATTGAAT
TAGCATCCTGGTCAGGATCTTCGGGTGGTCCAATAATTGACATGAATGCA
ACGCGAATTAACGGAACGCCAACTGTTGTCGGAGTCCTGATGAGTTCAGG
GTGGGAAGTGTGTGACTCTGGTATCGTCACCGTAACAACTGGTATTCCAG
TCGTTCAGGGACTTATCGCGTCTACTTCCAATGCTAGAAATGGGAGAGAA
AAGGGCCAAGGAAATGAAAGTGTTTCCGTGAATTCGAAGACACCTCTTGT
TGAGCAACTTGCCGGCCCTATAGCTCCTGTTGAAGCAAGCACGGAGCCAT
TGGAATTATTGACCTTTCATAGCACACAAGAATCCGACGAATACGATGTT
ATTCCTATGGTTTCCGGTGATGAACAGATGGTATGA