Gcaud8485.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8485.t1
Unique Name	Gcaud8485.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	286

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1141_length_13362_cov_4.300354	contig	NODE_1141_length_13362_cov_4.300354:5173..6122 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8485	Gcaud8485	Gracilaria caudata M_176_S67 male	gene	NODE_1141_length_13362_cov_4.300354 5173..6122 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8485.t1	Gcaud8485.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1141_length_13362_cov_4.300354 5173..6122 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8485.t1.start1	Gcaud8485.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1141_length_13362_cov_4.300354 5173..5175 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8485.t1.CDS1	Gcaud8485.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1141_length_13362_cov_4.300354 5173..6011 +
Gcaud8485.t1.CDS2	Gcaud8485.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1141_length_13362_cov_4.300354 6104..6122 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8485.t1.exon1	Gcaud8485.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1141_length_13362_cov_4.300354 5173..6011 +
Gcaud8485.t1.exon2	Gcaud8485.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1141_length_13362_cov_4.300354 6104..6122 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8485.t1.intron1	Gcaud8485.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1141_length_13362_cov_4.300354 6012..6103 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8485.t1.stop1	Gcaud8485.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1141_length_13362_cov_4.300354 6120..6122 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1141_length_13362_cov_4.300354:5173..6122+
coding sequence from alignment at NODE_1141_length_13362_cov_4.300354:5173..6122+

mRNA sequence

>Gcaud8485.t1 ID=Gcaud8485.t1|Name=Gcaud8485.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=286bp
MCVTRLWSIVVLIAVIHSRLASGRALMPDIRNLLNGHELRTLREGHLDVT
ERDTGSKAKQPDYFSNNTLEMLFKDNRVTARIDSAVLDGIMLSMSGVVTY
NQATSHSNITDEADMAGKSGSSALILQAKLDGESFRLMWMKRSCACSSDA
RFVITSANEGDEVWVAGSTTGLDNGEREVLESGMALMRYNSSGTQLLLRQ
LGAAGEKYDWVGYTLNARNGKRNVTLVGSANEKRYEGMQSALVAEIANES
GDILKSVRISEGENVVGETFWNAKSMNGTLRRTRV*

spliced messenger RNA

>Gcaud8485.t1 ID=Gcaud8485.t1|Name=Gcaud8485.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=858bp|location=Sequence derived from alignment at NODE_1141_length_13362_cov_4.300354:5173..6122+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGTAACTCGACTTTGGTCAATAGTGGTATTGATCGCGGTCATTCA
CAGTCGGCTAGCCTCTGGAAGAGCTCTGATGCCCGATATACGGAACTTAC
TGAATGGACATGAACTGCGGACACTACGTGAAGGCCATTTAGACGTGACG
GAAAGAGACACAGGTTCAAAGGCGAAGCAGCCCGACTACTTCTCGAATAA
TACGTTGGAGATGTTGTTCAAAGACAACAGGGTAACCGCCAGAATCGATT
CCGCAGTTCTGGATGGAATCATGCTCAGTATGAGCGGCGTTGTGACATAC
AACCAGGCGACGTCTCATTCCAACATCACTGACGAGGCAGATATGGCTGG
CAAATCCGGAAGCTCCGCGCTCATACTTCAGGCAAAATTGGATGGCGAAA
GCTTTCGACTCATGTGGATGAAACGTTCATGCGCGTGTTCGTCGGACGCG
AGGTTCGTGATTACCAGCGCAAACGAAGGAGATGAGGTGTGGGTGGCTGG
CAGCACCACAGGACTAGACAATGGCGAAAGAGAGGTACTTGAATCGGGAA
TGGCTTTGATGCGATACAACTCGTCGGGAACTCAGTTGCTTCTGCGACAA
CTCGGAGCGGCTGGAGAGAAATACGACTGGGTAGGGTATACGTTGAACGC
AAGAAACGGTAAAAGGAACGTGACTCTGGTCGGAAGTGCGAATGAAAAGA
GGTACGAAGGAATGCAGAGTGCTCTGGTCGCTGAGATTGCGAATGAGAGT
GGGGACATCTTGAAGTCCGTGCGAATCAGTGAGGGAGAAAACGTGGTGGG
TGAGACGTTCTGGAATGCGAAGAGCATGAATGGCACGCTCCGGCGTACGC
GAGTTTGA

protein sequence of Gcaud8485.t1

>Gcaud8485.t1 ID=Gcaud8485.t1|Name=Gcaud8485.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=286bp
MCVTRLWSIVVLIAVIHSRLASGRALMPDIRNLLNGHELRTLREGHLDVT
ERDTGSKAKQPDYFSNNTLEMLFKDNRVTARIDSAVLDGIMLSMSGVVTY
NQATSHSNITDEADMAGKSGSSALILQAKLDGESFRLMWMKRSCACSSDA
RFVITSANEGDEVWVAGSTTGLDNGEREVLESGMALMRYNSSGTQLLLRQ
LGAAGEKYDWVGYTLNARNGKRNVTLVGSANEKRYEGMQSALVAEIANES
GDILKSVRISEGENVVGETFWNAKSMNGTLRRTRV*

mRNA from alignment at NODE_1141_length_13362_cov_4.300354:5173..6122+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8485.t1 ID=Gcaud8485.t1|Name=Gcaud8485.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=950bp|location=Sequence derived from alignment at NODE_1141_length_13362_cov_4.300354:5173..6122+ (Gracilaria caudata M_176_S67 male)
ATGTGCGTAACTCGACTTTGGTCAATAGTGGTATTGATCGCGGTCATTCA
CAGTCGGCTAGCCTCTGGAAGAGCTCTGATGCCCGATATACGGAACTTAC
TGAATGGACATGAACTGCGGACACTACGTGAAGGCCATTTAGACGTGACG
GAAAGAGACACAGGTTCAAAGGCGAAGCAGCCCGACTACTTCTCGAATAA
TACGTTGGAGATGTTGTTCAAAGACAACAGGGTAACCGCCAGAATCGATT
CCGCAGTTCTGGATGGAATCATGCTCAGTATGAGCGGCGTTGTGACATAC
AACCAGGCGACGTCTCATTCCAACATCACTGACGAGGCAGATATGGCTGG
CAAATCCGGAAGCTCCGCGCTCATACTTCAGGCAAAATTGGATGGCGAAA
GCTTTCGACTCATGTGGATGAAACGTTCATGCGCGTGTTCGTCGGACGCG
AGGTTCGTGATTACCAGCGCAAACGAAGGAGATGAGGTGTGGGTGGCTGG
CAGCACCACAGGACTAGACAATGGCGAAAGAGAGGTACTTGAATCGGGAA
TGGCTTTGATGCGATACAACTCGTCGGGAACTCAGTTGCTTCTGCGACAA
CTCGGAGCGGCTGGAGAGAAATACGACTGGGTAGGGTATACGTTGAACGC
AAGAAACGGTAAAAGGAACGTGACTCTGGTCGGAAGTGCGAATGAAAAGA
GGTACGAAGGAATGCAGAGTGCTCTGGTCGCTGAGATTGCGAATGAGAGT
GGGGACATCTTGAAGTCCGTGCGAATCAGTGAGGGAGAAAACGTGGTGGG
TGAGACGTTCTGGAATGCGAAGAGCATGAATGGCACGCTGTACGTGGTGG
GAAAACGCAGTGTCCAAACGGGGTTGACACCGTCATCCACGCTAACGCTG
ACTAAGTTCGATACGGATACGATGCAAGTAGCCGGCGTACGCGAGTTTGA

Coding sequence (CDS) from alignment at NODE_1141_length_13362_cov_4.300354:5173..6122+

>Gcaud8485.t1 ID=Gcaud8485.t1|Name=Gcaud8485.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=858bp|location=Sequence derived from alignment at NODE_1141_length_13362_cov_4.300354:5173..6122+ (Gracilaria caudata M_176_S67 male)
ATGTGCGTAACTCGACTTTGGTCAATAGTGGTATTGATCGCGGTCATTCA
CAGTCGGCTAGCCTCTGGAAGAGCTCTGATGCCCGATATACGGAACTTAC
TGAATGGACATGAACTGCGGACACTACGTGAAGGCCATTTAGACGTGACG
GAAAGAGACACAGGTTCAAAGGCGAAGCAGCCCGACTACTTCTCGAATAA
TACGTTGGAGATGTTGTTCAAAGACAACAGGGTAACCGCCAGAATCGATT
CCGCAGTTCTGGATGGAATCATGCTCAGTATGAGCGGCGTTGTGACATAC
AACCAGGCGACGTCTCATTCCAACATCACTGACGAGGCAGATATGGCTGG
CAAATCCGGAAGCTCCGCGCTCATACTTCAGGCAAAATTGGATGGCGAAA
GCTTTCGACTCATGTGGATGAAACGTTCATGCGCGTGTTCGTCGGACGCG
AGGTTCGTGATTACCAGCGCAAACGAAGGAGATGAGGTGTGGGTGGCTGG
CAGCACCACAGGACTAGACAATGGCGAAAGAGAGGTACTTGAATCGGGAA
TGGCTTTGATGCGATACAACTCGTCGGGAACTCAGTTGCTTCTGCGACAA
CTCGGAGCGGCTGGAGAGAAATACGACTGGGTAGGGTATACGTTGAACGC
AAGAAACGGTAAAAGGAACGTGACTCTGGTCGGAAGTGCGAATGAAAAGA
GGTACGAAGGAATGCAGAGTGCTCTGGTCGCTGAGATTGCGAATGAGAGT
GGGGACATCTTGAAGTCCGTGCGAATCAGTGAGGGAGAAAACGTGGTGGG
TGAGACGTTCTGGAATGCGAAGAGCATGAATGGCACGCTCCGGCGTACGC
GAGTTTGA