Gcaud8480.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8480.t1
Unique Name	Gcaud8480.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	394

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2653_length_5042_cov_6.430822	contig	NODE_2653_length_5042_cov_6.430822:2975..4156 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706429.1
Preferred name	PHR2
PFAMs	DNA_photolyase,FAD_binding_7
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01669
Evalue	1.4e-89
EggNOG OGs	COG0415@1\|root,KOG0133@2759\|Eukaryota
EC	4.1.99.3
Description	DNA photolyase activity
COG category	L
BRITE	ko00000,ko01000,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8480	Gcaud8480	Gracilaria caudata M_176_S67 male	gene	NODE_2653_length_5042_cov_6.430822 2975..4156 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8480.t1.start1	Gcaud8480.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2653_length_5042_cov_6.430822 2975..2977 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8480.t1.CDS1	Gcaud8480.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2653_length_5042_cov_6.430822 2975..4156 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8480.t1.exon1	Gcaud8480.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2653_length_5042_cov_6.430822 2975..4156 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8480.t1.stop1	Gcaud8480.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2653_length_5042_cov_6.430822 4154..4156 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8480.t1	Gcaud8480.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2653_length_5042_cov_6.430822 2975..4156 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2653_length_5042_cov_6.430822:2975..4156+
coding sequence from alignment at NODE_2653_length_5042_cov_6.430822:2975..4156+

mRNA sequence

>Gcaud8480.t1 ID=Gcaud8480.t1|Name=Gcaud8480.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=394bp
MRPVTYVSQPSLPNPARSSRVSRRLAPASLPPLNTLAISADRPHAARTTS
ATPDALPVSSHSLLSRPLFPPPAAPPPSNVIVWFRLDLRLHDHPALSHAV
DECHGGSVTPLYIFDPRCYGKTSFGFEKTGRHRANFLVQSVTYLRESLIK
RGSNLLVKYGHPEELLPRLARQLNASTVVCHKEGALADTRLEHKVEKALQ
SNGVAFCSLFSNYLYHVSDLPFPIQDIPDSYVVFREAVQTSCVIRDPLQA
PDHLPSFPPIDADQIPTLKDLGLSPPPRVHGDTFFRGGEREALSKLAQII
EDAKTVPRERSVAEHLGSDFSCRISPWLSFGCLSPRRVHSELKKASKACQ
TSTYFELVWRDFVRYITVKYSLITMCRQSNSPVPPRSAPALTH*

spliced messenger RNA

>Gcaud8480.t1 ID=Gcaud8480.t1|Name=Gcaud8480.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1182bp|location=Sequence derived from alignment at NODE_2653_length_5042_cov_6.430822:2975..4156+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCCTGTCACGTACGTCTCACAGCCGAGTCTCCCCAATCCCGCGCG
CTCATCGCGTGTTTCTCGTCGGCTTGCACCGGCCTCTCTGCCGCCCCTCA
ACACGCTTGCCATCAGTGCTGATCGCCCGCATGCCGCCCGTACTACATCC
GCCACTCCAGATGCGCTGCCTGTCTCGTCGCACTCGCTGCTCAGCAGGCC
GTTGTTTCCACCACCAGCGGCACCGCCGCCTTCCAACGTGATTGTTTGGT
TCCGACTTGATCTTCGATTGCATGACCATCCCGCGCTTTCGCATGCCGTT
GACGAATGTCATGGCGGCTCTGTCACGCCCTTGTACATCTTCGATCCGCG
TTGCTATGGAAAGACCAGCTTTGGCTTCGAGAAGACAGGACGACATCGAG
CCAATTTCCTTGTTCAGTCCGTCACCTACCTCAGAGAATCGCTGATTAAG
CGCGGTTCCAATTTGCTCGTTAAGTACGGCCACCCAGAAGAGCTATTGCC
TCGTCTGGCACGTCAACTCAACGCGTCCACAGTGGTTTGTCACAAAGAAG
GAGCACTTGCTGACACCCGCTTGGAACACAAAGTGGAAAAAGCGCTGCAG
AGTAACGGCGTGGCGTTCTGTTCGCTTTTCTCCAATTATCTTTATCACGT
ATCGGATCTTCCTTTCCCCATTCAAGACATTCCGGACTCGTACGTTGTCT
TTCGCGAGGCCGTGCAAACATCATGCGTAATAAGAGATCCACTTCAAGCA
CCAGATCATCTGCCATCTTTTCCGCCCATAGATGCGGACCAAATTCCAAC
TTTGAAAGACCTTGGTCTTTCACCACCGCCTAGGGTACACGGCGATACTT
TCTTTCGAGGCGGAGAACGGGAGGCTTTGTCAAAGCTTGCGCAAATCATA
GAGGATGCCAAAACCGTACCGCGAGAACGATCTGTTGCGGAGCATCTTGG
TTCTGACTTTTCGTGCCGCATATCTCCCTGGCTTTCGTTTGGATGTCTGA
GTCCGAGACGAGTTCACTCAGAACTTAAGAAAGCATCCAAGGCCTGTCAG
ACATCCACCTACTTTGAGCTTGTCTGGAGGGACTTTGTGCGGTACATAAC
CGTCAAGTACTCTCTGATCACCATGTGCAGGCAGTCTAACTCACCGGTGC
CACCTCGCTCCGCTCCCGCCCTCACACACTAG

protein sequence of Gcaud8480.t1

>Gcaud8480.t1 ID=Gcaud8480.t1|Name=Gcaud8480.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=394bp
MRPVTYVSQPSLPNPARSSRVSRRLAPASLPPLNTLAISADRPHAARTTS
ATPDALPVSSHSLLSRPLFPPPAAPPPSNVIVWFRLDLRLHDHPALSHAV
DECHGGSVTPLYIFDPRCYGKTSFGFEKTGRHRANFLVQSVTYLRESLIK
RGSNLLVKYGHPEELLPRLARQLNASTVVCHKEGALADTRLEHKVEKALQ
SNGVAFCSLFSNYLYHVSDLPFPIQDIPDSYVVFREAVQTSCVIRDPLQA
PDHLPSFPPIDADQIPTLKDLGLSPPPRVHGDTFFRGGEREALSKLAQII
EDAKTVPRERSVAEHLGSDFSCRISPWLSFGCLSPRRVHSELKKASKACQ
TSTYFELVWRDFVRYITVKYSLITMCRQSNSPVPPRSAPALTH*

mRNA from alignment at NODE_2653_length_5042_cov_6.430822:2975..4156+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8480.t1 ID=Gcaud8480.t1|Name=Gcaud8480.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1182bp|location=Sequence derived from alignment at NODE_2653_length_5042_cov_6.430822:2975..4156+ (Gracilaria caudata M_176_S67 male)
ATGAGGCCTGTCACGTACGTCTCACAGCCGAGTCTCCCCAATCCCGCGCG
CTCATCGCGTGTTTCTCGTCGGCTTGCACCGGCCTCTCTGCCGCCCCTCA
ACACGCTTGCCATCAGTGCTGATCGCCCGCATGCCGCCCGTACTACATCC
GCCACTCCAGATGCGCTGCCTGTCTCGTCGCACTCGCTGCTCAGCAGGCC
GTTGTTTCCACCACCAGCGGCACCGCCGCCTTCCAACGTGATTGTTTGGT
TCCGACTTGATCTTCGATTGCATGACCATCCCGCGCTTTCGCATGCCGTT
GACGAATGTCATGGCGGCTCTGTCACGCCCTTGTACATCTTCGATCCGCG
TTGCTATGGAAAGACCAGCTTTGGCTTCGAGAAGACAGGACGACATCGAG
CCAATTTCCTTGTTCAGTCCGTCACCTACCTCAGAGAATCGCTGATTAAG
CGCGGTTCCAATTTGCTCGTTAAGTACGGCCACCCAGAAGAGCTATTGCC
TCGTCTGGCACGTCAACTCAACGCGTCCACAGTGGTTTGTCACAAAGAAG
GAGCACTTGCTGACACCCGCTTGGAACACAAAGTGGAAAAAGCGCTGCAG
AGTAACGGCGTGGCGTTCTGTTCGCTTTTCTCCAATTATCTTTATCACGT
ATCGGATCTTCCTTTCCCCATTCAAGACATTCCGGACTCGTACGTTGTCT
TTCGCGAGGCCGTGCAAACATCATGCGTAATAAGAGATCCACTTCAAGCA
CCAGATCATCTGCCATCTTTTCCGCCCATAGATGCGGACCAAATTCCAAC
TTTGAAAGACCTTGGTCTTTCACCACCGCCTAGGGTACACGGCGATACTT
TCTTTCGAGGCGGAGAACGGGAGGCTTTGTCAAAGCTTGCGCAAATCATA
GAGGATGCCAAAACCGTACCGCGAGAACGATCTGTTGCGGAGCATCTTGG
TTCTGACTTTTCGTGCCGCATATCTCCCTGGCTTTCGTTTGGATGTCTGA
GTCCGAGACGAGTTCACTCAGAACTTAAGAAAGCATCCAAGGCCTGTCAG
ACATCCACCTACTTTGAGCTTGTCTGGAGGGACTTTGTGCGGTACATAAC
CGTCAAGTACTCTCTGATCACCATGTGCAGGCAGTCTAACTCACCGGTGC
CACCTCGCTCCGCTCCCGCCCTCACACACTAG

Coding sequence (CDS) from alignment at NODE_2653_length_5042_cov_6.430822:2975..4156+

>Gcaud8480.t1 ID=Gcaud8480.t1|Name=Gcaud8480.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1182bp|location=Sequence derived from alignment at NODE_2653_length_5042_cov_6.430822:2975..4156+ (Gracilaria caudata M_176_S67 male)
ATGAGGCCTGTCACGTACGTCTCACAGCCGAGTCTCCCCAATCCCGCGCG
CTCATCGCGTGTTTCTCGTCGGCTTGCACCGGCCTCTCTGCCGCCCCTCA
ACACGCTTGCCATCAGTGCTGATCGCCCGCATGCCGCCCGTACTACATCC
GCCACTCCAGATGCGCTGCCTGTCTCGTCGCACTCGCTGCTCAGCAGGCC
GTTGTTTCCACCACCAGCGGCACCGCCGCCTTCCAACGTGATTGTTTGGT
TCCGACTTGATCTTCGATTGCATGACCATCCCGCGCTTTCGCATGCCGTT
GACGAATGTCATGGCGGCTCTGTCACGCCCTTGTACATCTTCGATCCGCG
TTGCTATGGAAAGACCAGCTTTGGCTTCGAGAAGACAGGACGACATCGAG
CCAATTTCCTTGTTCAGTCCGTCACCTACCTCAGAGAATCGCTGATTAAG
CGCGGTTCCAATTTGCTCGTTAAGTACGGCCACCCAGAAGAGCTATTGCC
TCGTCTGGCACGTCAACTCAACGCGTCCACAGTGGTTTGTCACAAAGAAG
GAGCACTTGCTGACACCCGCTTGGAACACAAAGTGGAAAAAGCGCTGCAG
AGTAACGGCGTGGCGTTCTGTTCGCTTTTCTCCAATTATCTTTATCACGT
ATCGGATCTTCCTTTCCCCATTCAAGACATTCCGGACTCGTACGTTGTCT
TTCGCGAGGCCGTGCAAACATCATGCGTAATAAGAGATCCACTTCAAGCA
CCAGATCATCTGCCATCTTTTCCGCCCATAGATGCGGACCAAATTCCAAC
TTTGAAAGACCTTGGTCTTTCACCACCGCCTAGGGTACACGGCGATACTT
TCTTTCGAGGCGGAGAACGGGAGGCTTTGTCAAAGCTTGCGCAAATCATA
GAGGATGCCAAAACCGTACCGCGAGAACGATCTGTTGCGGAGCATCTTGG
TTCTGACTTTTCGTGCCGCATATCTCCCTGGCTTTCGTTTGGATGTCTGA
GTCCGAGACGAGTTCACTCAGAACTTAAGAAAGCATCCAAGGCCTGTCAG
ACATCCACCTACTTTGAGCTTGTCTGGAGGGACTTTGTGCGGTACATAAC
CGTCAAGTACTCTCTGATCACCATGTGCAGGCAGTCTAACTCACCGGTGC
CACCTCGCTCCGCTCCCGCCCTCACACACTAG