Gcaud8472.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8472.t1
Unique Name	Gcaud8472.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	337

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_412_length_26355_cov_4.423431	contig	NODE_412_length_26355_cov_4.423431:16066..17151 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	120017.I2G4H5
PFAMs	XAP5
Max annot lvl	4751\|Fungi
KEGG ko	ko:K13119
GOs	GO:0000228,GO:0000785,GO:0000790,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0051276,GO:0070013,GO:0071840
Evalue	2.03e-84
EggNOG OGs	KOG2894@1\|root,KOG2894@2759\|Eukaryota,38EP7@33154\|Opisthokonta,3NU7P@4751\|Fungi,3UZPS@5204\|Basidiomycota,3N49E@452284\|Ustilaginomycotina
Description	XAP5, circadian clock regulator
COG category	S
BRITE	ko00000,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8472	Gcaud8472	Gracilaria caudata M_176_S67 male	gene	NODE_412_length_26355_cov_4.423431 16066..17151 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8472.t1	Gcaud8472.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_412_length_26355_cov_4.423431 16066..17151 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8472.t1.start1	Gcaud8472.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_412_length_26355_cov_4.423431 16066..16068 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8472.t1.CDS1	Gcaud8472.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_412_length_26355_cov_4.423431 16066..16872 +
Gcaud8472.t1.CDS2	Gcaud8472.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_412_length_26355_cov_4.423431 16948..17151 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8472.t1.exon1	Gcaud8472.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_412_length_26355_cov_4.423431 16066..16872 +
Gcaud8472.t1.exon2	Gcaud8472.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_412_length_26355_cov_4.423431 16948..17151 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8472.t1.intron1	Gcaud8472.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_412_length_26355_cov_4.423431 16873..16947 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8472.t1.stop1	Gcaud8472.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_412_length_26355_cov_4.423431 17149..17151 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_412_length_26355_cov_4.423431:16066..17151+
coding sequence from alignment at NODE_412_length_26355_cov_4.423431:16066..17151+

mRNA sequence

>Gcaud8472.t1 ID=Gcaud8472.t1|Name=Gcaud8472.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=337bp
MSSYQGGSKAASRIQALEAQRKSQQQQHERRKEQIVTASSNVLHKAVSNN
FQSRSNPVDDFLNSDTVGLVTHRDFKARRELLQRGAETTQPQPPTAHCAA
SSAVKPLKRKAKRTKLSFAADSDQSDRDSDSSSSTQSNASPEHSAACNAS
KKRRLGKDPNVDTHFLPDTDLERARQQERERLRQEWLDKQQLIKNQIVRI
TYSFWDGTGHRKVINCKKGTTIAHFLTMVQPQIKQLRNTTAESLMFIKED
LIIPHHYSFYDFIVSKARGKSGPLFNFDVVEDVRVVADAGKEKEDAHAAK
VVERRWYERNRHIFPASRWELYDPTKKFSKYTIHGT*

spliced messenger RNA

>Gcaud8472.t1 ID=Gcaud8472.t1|Name=Gcaud8472.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1011bp|location=Sequence derived from alignment at NODE_412_length_26355_cov_4.423431:16066..17151+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCGTATCAAGGCGGTTCGAAAGCAGCGTCCAGAATTCAGGCGCT
CGAGGCGCAGAGAAAGTCTCAGCAACAGCAACATGAGCGAAGAAAGGAGC
AAATCGTAACCGCTTCGTCCAACGTGCTTCACAAAGCGGTCTCCAATAAC
TTTCAGTCGCGTTCCAACCCTGTCGATGATTTTCTCAACTCTGACACCGT
CGGGCTGGTAACCCATCGCGACTTCAAGGCGCGAAGAGAATTGCTTCAGC
GCGGCGCCGAAACAACACAACCGCAACCGCCCACTGCCCACTGTGCTGCC
TCGTCTGCCGTCAAACCTCTGAAGCGAAAGGCGAAGCGAACAAAGCTCTC
ATTTGCCGCGGATAGCGATCAAAGTGACCGTGATTCAGATTCTTCCTCCT
CCACACAGTCGAATGCGTCGCCAGAGCATTCCGCCGCATGCAACGCTTCG
AAGAAACGTAGACTGGGGAAGGACCCAAACGTTGACACCCATTTCTTGCC
GGATACAGACCTTGAACGAGCGCGACAGCAAGAACGCGAGCGACTGAGAC
AGGAATGGCTTGACAAACAGCAACTCATAAAGAACCAGATTGTGCGCATC
ACCTACAGTTTCTGGGATGGAACAGGCCATCGAAAGGTCATCAATTGTAA
AAAGGGAACCACAATCGCACATTTTCTCACCATGGTCCAGCCTCAGATCA
AGCAGCTGCGAAACACTACTGCCGAATCGCTCATGTTCATAAAGGAAGAC
CTCATCATTCCCCACCACTACTCATTTTATGACTTTATCGTTTCCAAAGC
CCGAGGGAAAAGCGGCCCTCTTTTCAACTTCGACGTCGTGGAAGACGTCC
GTGTAGTTGCGGACGCGGGCAAAGAAAAAGAAGATGCTCATGCTGCCAAG
GTCGTGGAACGACGTTGGTACGAGAGAAACCGTCATATTTTCCCCGCTTC
GCGTTGGGAGCTGTATGATCCTACAAAAAAGTTCTCCAAATATACCATTC
ACGGAACTTAG

protein sequence of Gcaud8472.t1

>Gcaud8472.t1 ID=Gcaud8472.t1|Name=Gcaud8472.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=337bp
MSSYQGGSKAASRIQALEAQRKSQQQQHERRKEQIVTASSNVLHKAVSNN
FQSRSNPVDDFLNSDTVGLVTHRDFKARRELLQRGAETTQPQPPTAHCAA
SSAVKPLKRKAKRTKLSFAADSDQSDRDSDSSSSTQSNASPEHSAACNAS
KKRRLGKDPNVDTHFLPDTDLERARQQERERLRQEWLDKQQLIKNQIVRI
TYSFWDGTGHRKVINCKKGTTIAHFLTMVQPQIKQLRNTTAESLMFIKED
LIIPHHYSFYDFIVSKARGKSGPLFNFDVVEDVRVVADAGKEKEDAHAAK
VVERRWYERNRHIFPASRWELYDPTKKFSKYTIHGT*

mRNA from alignment at NODE_412_length_26355_cov_4.423431:16066..17151+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8472.t1 ID=Gcaud8472.t1|Name=Gcaud8472.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at NODE_412_length_26355_cov_4.423431:16066..17151+ (Gracilaria caudata M_176_S67 male)
ATGTCGTCGTATCAAGGCGGTTCGAAAGCAGCGTCCAGAATTCAGGCGCT
CGAGGCGCAGAGAAAGTCTCAGCAACAGCAACATGAGCGAAGAAAGGAGC
AAATCGTAACCGCTTCGTCCAACGTGCTTCACAAAGCGGTCTCCAATAAC
TTTCAGTCGCGTTCCAACCCTGTCGATGATTTTCTCAACTCTGACACCGT
CGGGCTGGTAACCCATCGCGACTTCAAGGCGCGAAGAGAATTGCTTCAGC
GCGGCGCCGAAACAACACAACCGCAACCGCCCACTGCCCACTGTGCTGCC
TCGTCTGCCGTCAAACCTCTGAAGCGAAAGGCGAAGCGAACAAAGCTCTC
ATTTGCCGCGGATAGCGATCAAAGTGACCGTGATTCAGATTCTTCCTCCT
CCACACAGTCGAATGCGTCGCCAGAGCATTCCGCCGCATGCAACGCTTCG
AAGAAACGTAGACTGGGGAAGGACCCAAACGTTGACACCCATTTCTTGCC
GGATACAGACCTTGAACGAGCGCGACAGCAAGAACGCGAGCGACTGAGAC
AGGAATGGCTTGACAAACAGCAACTCATAAAGAACCAGATTGTGCGCATC
ACCTACAGTTTCTGGGATGGAACAGGCCATCGAAAGGTCATCAATTGTAA
AAAGGGAACCACAATCGCACATTTTCTCACCATGGTCCAGCCTCAGATCA
AGCAGCTGCGAAACACTACTGCCGAATCGCTCATGTTCATAAAGGAAGAC
CTCATCATTCCCCACCACTACTCATTTTATGACTTTATCGTTTCCAAAGC
CCGAGGGGTAAGTCTCTTGTACTCCCGTCGATTACCATCTTTTGCAAAAT
CCCCACTAACATTTCGCTCTTTACTGTCACAGAAAAGCGGCCCTCTTTTC
AACTTCGACGTCGTGGAAGACGTCCGTGTAGTTGCGGACGCGGGCAAAGA
AAAAGAAGATGCTCATGCTGCCAAGGTCGTGGAACGACGTTGGTACGAGA
GAAACCGTCATATTTTCCCCGCTTCGCGTTGGGAGCTGTATGATCCTACA
AAAAAGTTCTCCAAATATACCATTCACGGAACTTAG

Coding sequence (CDS) from alignment at NODE_412_length_26355_cov_4.423431:16066..17151+

>Gcaud8472.t1 ID=Gcaud8472.t1|Name=Gcaud8472.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1011bp|location=Sequence derived from alignment at NODE_412_length_26355_cov_4.423431:16066..17151+ (Gracilaria caudata M_176_S67 male)
ATGTCGTCGTATCAAGGCGGTTCGAAAGCAGCGTCCAGAATTCAGGCGCT
CGAGGCGCAGAGAAAGTCTCAGCAACAGCAACATGAGCGAAGAAAGGAGC
AAATCGTAACCGCTTCGTCCAACGTGCTTCACAAAGCGGTCTCCAATAAC
TTTCAGTCGCGTTCCAACCCTGTCGATGATTTTCTCAACTCTGACACCGT
CGGGCTGGTAACCCATCGCGACTTCAAGGCGCGAAGAGAATTGCTTCAGC
GCGGCGCCGAAACAACACAACCGCAACCGCCCACTGCCCACTGTGCTGCC
TCGTCTGCCGTCAAACCTCTGAAGCGAAAGGCGAAGCGAACAAAGCTCTC
ATTTGCCGCGGATAGCGATCAAAGTGACCGTGATTCAGATTCTTCCTCCT
CCACACAGTCGAATGCGTCGCCAGAGCATTCCGCCGCATGCAACGCTTCG
AAGAAACGTAGACTGGGGAAGGACCCAAACGTTGACACCCATTTCTTGCC
GGATACAGACCTTGAACGAGCGCGACAGCAAGAACGCGAGCGACTGAGAC
AGGAATGGCTTGACAAACAGCAACTCATAAAGAACCAGATTGTGCGCATC
ACCTACAGTTTCTGGGATGGAACAGGCCATCGAAAGGTCATCAATTGTAA
AAAGGGAACCACAATCGCACATTTTCTCACCATGGTCCAGCCTCAGATCA
AGCAGCTGCGAAACACTACTGCCGAATCGCTCATGTTCATAAAGGAAGAC
CTCATCATTCCCCACCACTACTCATTTTATGACTTTATCGTTTCCAAAGC
CCGAGGGAAAAGCGGCCCTCTTTTCAACTTCGACGTCGTGGAAGACGTCC
GTGTAGTTGCGGACGCGGGCAAAGAAAAAGAAGATGCTCATGCTGCCAAG
GTCGTGGAACGACGTTGGTACGAGAGAAACCGTCATATTTTCCCCGCTTC
GCGTTGGGAGCTGTATGATCCTACAAAAAAGTTCTCCAAATATACCATTC
ACGGAACTTAG