Gcaud8471.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8471.t1
Unique Name	Gcaud8471.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	660

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_412_length_26355_cov_4.423431	contig	NODE_412_length_26355_cov_4.423431:8921..10900 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr48253
PFAMs	BACK,BTB,Kelch_1,Kelch_4,Kelch_6
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10442,ko:K20285,ko:K21912
Evalue	9.14e-22
EggNOG OGs	KOG4441@1\|root,KOG4441@2759\|Eukaryota
Description	protein ubiquitination
COG category	KLT
BRITE	ko00000,ko04121,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8471	Gcaud8471	Gracilaria caudata M_176_S67 male	gene	NODE_412_length_26355_cov_4.423431 8921..10900 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8471.t1.stop1	Gcaud8471.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_412_length_26355_cov_4.423431 8921..8923 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8471.t1.CDS1	Gcaud8471.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_412_length_26355_cov_4.423431 8921..10900 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8471.t1.exon1	Gcaud8471.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_412_length_26355_cov_4.423431 8921..10900 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8471.t1.start1	Gcaud8471.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_412_length_26355_cov_4.423431 10898..10900 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8471.t1	Gcaud8471.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_412_length_26355_cov_4.423431 8921..10900 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_412_length_26355_cov_4.423431:8921..10900-
coding sequence from alignment at NODE_412_length_26355_cov_4.423431:8921..10900-

mRNA sequence

>Gcaud8471.t1 ID=Gcaud8471.t1|Name=Gcaud8471.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=660bp
LIPIVSPTPAAIIPAAAIPAAVPPSSELTPIPTAPGNGQGYFPCHPNKAV
KQTEVTCTHIRMPPALCSRCSLKPVTAQGQFKRCNDIFELETPACHQALD
EYVALNGACDPVRTRDVAAWKAGDAAAATQLDYFLYSVCELCCDCVPMGI
AAEDYAALQAAHTPLNPTLWAADRGNCPAHAQYDLCNVFPFVQALIKPGE
PETVKPAACPPLSQWLNSDRSTNWQINPDATIDASTRDFLNGALDALECG
SEGIWKTCYHMEDLQNHIDIPGDVESVPDLEVPAQVAGTDPAELNTPAVV
TDPAVADVPAAPAVSTDPAGVAAAPAAPAAATDPAATATDPAAPAAVADP
AANPAAAPADPATPVVADPVAPTTGTVDSATDKDAVSGSTPDDAAAATAP
TAPITPATPTTNTPTTPTTAVPDDTSSAPPASSDDAATATGATDEAPMTV
GGQENGIYGSPSASPSSGGGDSCFPASATVELASGLCIPMHQLKIGDRVR
VSADQFSDVYMFSHRDVTASDPSYVRIVTTETSVTMTTGHYLPVIKNVTG
TGYVLVQAESVEIGDLVQLASGQWSVVTNVLPDEAIGLFNPHTFAGTICV
DGVVTSTFTRSVSADAAQALLSPIRALYWVGIARERLAGNWFVRGVDQRL
TSFAQTFHL*

spliced messenger RNA

>Gcaud8471.t1 ID=Gcaud8471.t1|Name=Gcaud8471.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at NODE_412_length_26355_cov_4.423431:8921..10900- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGATACCCATTGTGTCTCCAACACCAGCTGCTATCATTCCTGCTGCTGC
CATTCCTGCCGCCGTGCCGCCATCGTCTGAGCTTACCCCCATCCCCACCG
CCCCCGGCAATGGCCAGGGTTATTTCCCGTGTCATCCGAACAAGGCGGTC
AAGCAGACAGAAGTCACCTGCACTCACATTCGTATGCCGCCAGCGCTGTG
TTCGCGATGTTCCTTGAAGCCGGTTACCGCTCAAGGTCAGTTCAAGCGTT
GCAACGATATCTTCGAGCTTGAGACGCCTGCTTGTCATCAGGCTCTCGAC
GAGTATGTTGCTCTTAACGGCGCTTGTGACCCCGTGAGAACGCGCGATGT
TGCTGCGTGGAAGGCCGGAGACGCCGCTGCAGCCACGCAACTTGACTACT
TTTTGTACTCCGTTTGTGAGCTTTGCTGTGATTGTGTTCCAATGGGCATT
GCTGCCGAGGATTATGCGGCGTTGCAGGCGGCACATACTCCGCTAAACCC
AACGCTCTGGGCTGCTGACAGGGGTAATTGCCCAGCTCATGCCCAGTATG
ATCTCTGTAACGTGTTCCCATTTGTGCAAGCTCTTATCAAACCAGGCGAA
CCGGAGACCGTAAAGCCAGCGGCATGTCCTCCTTTGAGTCAATGGCTCAA
TTCGGACCGTTCTACAAACTGGCAGATTAACCCAGATGCTACAATTGACG
CCAGCACCAGGGATTTCTTGAACGGCGCTTTGGATGCCTTGGAATGCGGC
AGTGAAGGCATTTGGAAAACATGTTACCATATGGAGGACCTGCAGAACCA
CATTGATATTCCTGGTGATGTTGAATCAGTTCCTGACCTGGAAGTCCCTG
CGCAGGTTGCTGGTACTGACCCCGCTGAACTTAATACTCCGGCTGTCGTG
ACGGACCCCGCTGTCGCTGACGTTCCTGCTGCCCCCGCCGTTTCGACAGA
TCCTGCTGGCGTTGCAGCCGCTCCTGCCGCTCCTGCCGCCGCTACAGACC
CTGCAGCCACTGCCACGGATCCCGCCGCTCCTGCTGCTGTTGCTGATCCT
GCTGCCAATCCTGCTGCCGCTCCAGCAGATCCTGCCACCCCTGTCGTGGC
AGATCCTGTGGCGCCCACGACAGGAACAGTTGATTCAGCCACTGACAAAG
ACGCTGTGTCTGGCAGCACCCCTGATGATGCAGCCGCTGCGACAGCACCT
ACCGCCCCGATTACGCCAGCTACTCCTACCACCAACACTCCAACTACCCC
GACTACTGCTGTACCAGATGATACCAGTAGTGCTCCTCCAGCATCTAGCG
ATGACGCAGCAACTGCGACTGGGGCCACTGATGAAGCGCCTATGACAGTC
GGTGGTCAAGAGAATGGAATATATGGTTCTCCTTCTGCTTCTCCGTCAAG
CGGGGGTGGAGACTCCTGCTTTCCAGCCAGCGCTACAGTCGAGCTCGCCT
CTGGACTGTGCATTCCTATGCACCAACTCAAAATCGGCGATCGTGTTCGC
GTATCAGCCGATCAGTTTTCAGACGTTTACATGTTCTCACACCGCGATGT
CACAGCTTCAGATCCGTCGTACGTACGCATCGTCACGACAGAGACTTCTG
TAACTATGACAACAGGACACTATCTGCCGGTCATCAAGAACGTCACGGGA
ACGGGATACGTTCTTGTTCAGGCAGAGTCTGTCGAGATTGGAGATCTTGT
GCAACTGGCTTCTGGACAGTGGTCGGTTGTGACCAACGTTTTGCCAGATG
AGGCAATTGGATTGTTCAATCCTCATACTTTTGCTGGTACGATTTGCGTA
GACGGGGTTGTGACATCAACATTCACGCGCTCTGTGTCTGCAGATGCGGC
GCAGGCCTTGCTATCACCGATCAGAGCCTTGTACTGGGTGGGAATTGCTC
GTGAAAGACTTGCAGGAAACTGGTTTGTCCGTGGTGTTGACCAAAGGTTG
ACCTCGTTTGCACAGACGTTCCACTTATGA

protein sequence of Gcaud8471.t1

>Gcaud8471.t1 ID=Gcaud8471.t1|Name=Gcaud8471.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=660bp
LIPIVSPTPAAIIPAAAIPAAVPPSSELTPIPTAPGNGQGYFPCHPNKAV
KQTEVTCTHIRMPPALCSRCSLKPVTAQGQFKRCNDIFELETPACHQALD
EYVALNGACDPVRTRDVAAWKAGDAAAATQLDYFLYSVCELCCDCVPMGI
AAEDYAALQAAHTPLNPTLWAADRGNCPAHAQYDLCNVFPFVQALIKPGE
PETVKPAACPPLSQWLNSDRSTNWQINPDATIDASTRDFLNGALDALECG
SEGIWKTCYHMEDLQNHIDIPGDVESVPDLEVPAQVAGTDPAELNTPAVV
TDPAVADVPAAPAVSTDPAGVAAAPAAPAAATDPAATATDPAAPAAVADP
AANPAAAPADPATPVVADPVAPTTGTVDSATDKDAVSGSTPDDAAAATAP
TAPITPATPTTNTPTTPTTAVPDDTSSAPPASSDDAATATGATDEAPMTV
GGQENGIYGSPSASPSSGGGDSCFPASATVELASGLCIPMHQLKIGDRVR
VSADQFSDVYMFSHRDVTASDPSYVRIVTTETSVTMTTGHYLPVIKNVTG
TGYVLVQAESVEIGDLVQLASGQWSVVTNVLPDEAIGLFNPHTFAGTICV
DGVVTSTFTRSVSADAAQALLSPIRALYWVGIARERLAGNWFVRGVDQRL
TSFAQTFHL*

mRNA from alignment at NODE_412_length_26355_cov_4.423431:8921..10900-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8471.t1 ID=Gcaud8471.t1|Name=Gcaud8471.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at NODE_412_length_26355_cov_4.423431:8921..10900- (Gracilaria caudata M_176_S67 male)
CTGATACCCATTGTGTCTCCAACACCAGCTGCTATCATTCCTGCTGCTGC
CATTCCTGCCGCCGTGCCGCCATCGTCTGAGCTTACCCCCATCCCCACCG
CCCCCGGCAATGGCCAGGGTTATTTCCCGTGTCATCCGAACAAGGCGGTC
AAGCAGACAGAAGTCACCTGCACTCACATTCGTATGCCGCCAGCGCTGTG
TTCGCGATGTTCCTTGAAGCCGGTTACCGCTCAAGGTCAGTTCAAGCGTT
GCAACGATATCTTCGAGCTTGAGACGCCTGCTTGTCATCAGGCTCTCGAC
GAGTATGTTGCTCTTAACGGCGCTTGTGACCCCGTGAGAACGCGCGATGT
TGCTGCGTGGAAGGCCGGAGACGCCGCTGCAGCCACGCAACTTGACTACT
TTTTGTACTCCGTTTGTGAGCTTTGCTGTGATTGTGTTCCAATGGGCATT
GCTGCCGAGGATTATGCGGCGTTGCAGGCGGCACATACTCCGCTAAACCC
AACGCTCTGGGCTGCTGACAGGGGTAATTGCCCAGCTCATGCCCAGTATG
ATCTCTGTAACGTGTTCCCATTTGTGCAAGCTCTTATCAAACCAGGCGAA
CCGGAGACCGTAAAGCCAGCGGCATGTCCTCCTTTGAGTCAATGGCTCAA
TTCGGACCGTTCTACAAACTGGCAGATTAACCCAGATGCTACAATTGACG
CCAGCACCAGGGATTTCTTGAACGGCGCTTTGGATGCCTTGGAATGCGGC
AGTGAAGGCATTTGGAAAACATGTTACCATATGGAGGACCTGCAGAACCA
CATTGATATTCCTGGTGATGTTGAATCAGTTCCTGACCTGGAAGTCCCTG
CGCAGGTTGCTGGTACTGACCCCGCTGAACTTAATACTCCGGCTGTCGTG
ACGGACCCCGCTGTCGCTGACGTTCCTGCTGCCCCCGCCGTTTCGACAGA
TCCTGCTGGCGTTGCAGCCGCTCCTGCCGCTCCTGCCGCCGCTACAGACC
CTGCAGCCACTGCCACGGATCCCGCCGCTCCTGCTGCTGTTGCTGATCCT
GCTGCCAATCCTGCTGCCGCTCCAGCAGATCCTGCCACCCCTGTCGTGGC
AGATCCTGTGGCGCCCACGACAGGAACAGTTGATTCAGCCACTGACAAAG
ACGCTGTGTCTGGCAGCACCCCTGATGATGCAGCCGCTGCGACAGCACCT
ACCGCCCCGATTACGCCAGCTACTCCTACCACCAACACTCCAACTACCCC
GACTACTGCTGTACCAGATGATACCAGTAGTGCTCCTCCAGCATCTAGCG
ATGACGCAGCAACTGCGACTGGGGCCACTGATGAAGCGCCTATGACAGTC
GGTGGTCAAGAGAATGGAATATATGGTTCTCCTTCTGCTTCTCCGTCAAG
CGGGGGTGGAGACTCCTGCTTTCCAGCCAGCGCTACAGTCGAGCTCGCCT
CTGGACTGTGCATTCCTATGCACCAACTCAAAATCGGCGATCGTGTTCGC
GTATCAGCCGATCAGTTTTCAGACGTTTACATGTTCTCACACCGCGATGT
CACAGCTTCAGATCCGTCGTACGTACGCATCGTCACGACAGAGACTTCTG
TAACTATGACAACAGGACACTATCTGCCGGTCATCAAGAACGTCACGGGA
ACGGGATACGTTCTTGTTCAGGCAGAGTCTGTCGAGATTGGAGATCTTGT
GCAACTGGCTTCTGGACAGTGGTCGGTTGTGACCAACGTTTTGCCAGATG
AGGCAATTGGATTGTTCAATCCTCATACTTTTGCTGGTACGATTTGCGTA
GACGGGGTTGTGACATCAACATTCACGCGCTCTGTGTCTGCAGATGCGGC
GCAGGCCTTGCTATCACCGATCAGAGCCTTGTACTGGGTGGGAATTGCTC
GTGAAAGACTTGCAGGAAACTGGTTTGTCCGTGGTGTTGACCAAAGGTTG
ACCTCGTTTGCACAGACGTTCCACTTATGA

Coding sequence (CDS) from alignment at NODE_412_length_26355_cov_4.423431:8921..10900-

>Gcaud8471.t1 ID=Gcaud8471.t1|Name=Gcaud8471.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1980bp|location=Sequence derived from alignment at NODE_412_length_26355_cov_4.423431:8921..10900- (Gracilaria caudata M_176_S67 male)
CTGATACCCATTGTGTCTCCAACACCAGCTGCTATCATTCCTGCTGCTGC
CATTCCTGCCGCCGTGCCGCCATCGTCTGAGCTTACCCCCATCCCCACCG
CCCCCGGCAATGGCCAGGGTTATTTCCCGTGTCATCCGAACAAGGCGGTC
AAGCAGACAGAAGTCACCTGCACTCACATTCGTATGCCGCCAGCGCTGTG
TTCGCGATGTTCCTTGAAGCCGGTTACCGCTCAAGGTCAGTTCAAGCGTT
GCAACGATATCTTCGAGCTTGAGACGCCTGCTTGTCATCAGGCTCTCGAC
GAGTATGTTGCTCTTAACGGCGCTTGTGACCCCGTGAGAACGCGCGATGT
TGCTGCGTGGAAGGCCGGAGACGCCGCTGCAGCCACGCAACTTGACTACT
TTTTGTACTCCGTTTGTGAGCTTTGCTGTGATTGTGTTCCAATGGGCATT
GCTGCCGAGGATTATGCGGCGTTGCAGGCGGCACATACTCCGCTAAACCC
AACGCTCTGGGCTGCTGACAGGGGTAATTGCCCAGCTCATGCCCAGTATG
ATCTCTGTAACGTGTTCCCATTTGTGCAAGCTCTTATCAAACCAGGCGAA
CCGGAGACCGTAAAGCCAGCGGCATGTCCTCCTTTGAGTCAATGGCTCAA
TTCGGACCGTTCTACAAACTGGCAGATTAACCCAGATGCTACAATTGACG
CCAGCACCAGGGATTTCTTGAACGGCGCTTTGGATGCCTTGGAATGCGGC
AGTGAAGGCATTTGGAAAACATGTTACCATATGGAGGACCTGCAGAACCA
CATTGATATTCCTGGTGATGTTGAATCAGTTCCTGACCTGGAAGTCCCTG
CGCAGGTTGCTGGTACTGACCCCGCTGAACTTAATACTCCGGCTGTCGTG
ACGGACCCCGCTGTCGCTGACGTTCCTGCTGCCCCCGCCGTTTCGACAGA
TCCTGCTGGCGTTGCAGCCGCTCCTGCCGCTCCTGCCGCCGCTACAGACC
CTGCAGCCACTGCCACGGATCCCGCCGCTCCTGCTGCTGTTGCTGATCCT
GCTGCCAATCCTGCTGCCGCTCCAGCAGATCCTGCCACCCCTGTCGTGGC
AGATCCTGTGGCGCCCACGACAGGAACAGTTGATTCAGCCACTGACAAAG
ACGCTGTGTCTGGCAGCACCCCTGATGATGCAGCCGCTGCGACAGCACCT
ACCGCCCCGATTACGCCAGCTACTCCTACCACCAACACTCCAACTACCCC
GACTACTGCTGTACCAGATGATACCAGTAGTGCTCCTCCAGCATCTAGCG
ATGACGCAGCAACTGCGACTGGGGCCACTGATGAAGCGCCTATGACAGTC
GGTGGTCAAGAGAATGGAATATATGGTTCTCCTTCTGCTTCTCCGTCAAG
CGGGGGTGGAGACTCCTGCTTTCCAGCCAGCGCTACAGTCGAGCTCGCCT
CTGGACTGTGCATTCCTATGCACCAACTCAAAATCGGCGATCGTGTTCGC
GTATCAGCCGATCAGTTTTCAGACGTTTACATGTTCTCACACCGCGATGT
CACAGCTTCAGATCCGTCGTACGTACGCATCGTCACGACAGAGACTTCTG
TAACTATGACAACAGGACACTATCTGCCGGTCATCAAGAACGTCACGGGA
ACGGGATACGTTCTTGTTCAGGCAGAGTCTGTCGAGATTGGAGATCTTGT
GCAACTGGCTTCTGGACAGTGGTCGGTTGTGACCAACGTTTTGCCAGATG
AGGCAATTGGATTGTTCAATCCTCATACTTTTGCTGGTACGATTTGCGTA
GACGGGGTTGTGACATCAACATTCACGCGCTCTGTGTCTGCAGATGCGGC
GCAGGCCTTGCTATCACCGATCAGAGCCTTGTACTGGGTGGGAATTGCTC
GTGAAAGACTTGCAGGAAACTGGTTTGTCCGTGGTGTTGACCAAAGGTTG
ACCTCGTTTGCACAGACGTTCCACTTATGA