Gcaud8470.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8470.t1
Unique Name	Gcaud8470.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	597

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1692_length_8986_cov_4.234626	contig	NODE_1692_length_8986_cov_4.234626:7103..8893 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005702932.1
Preferred name	NDC80
PFAMs	Ndc80_HEC
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11547
GOs	GO:0000003,GO:0000070,GO:0000132,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0000819,GO:0000940,GO:0000942,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007080,GO:0007088,GO:0007127,GO:0007163,GO:0007346,GO:0008104,GO:0008150,GO:0008608,GO:0009987,GO:0010564,GO:0010965,GO:0015630,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0030010,GO:0030071,GO:0031109,GO:0031262,GO:0031617,GO:0031974,GO:0031981,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033365,GO:0034501,GO:0034502,GO:0034613,GO:0034622,GO:0040001,GO:0042802,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0045787,GO:0045931,GO:0046785,GO:0048285,GO:0048518,GO:0048522,GO:0050000,GO:0050789,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051258,GO:0051276,GO:0051293,GO:0051294,GO:0051303,GO:0051310,GO:0051315,GO:0051316,GO:0051321,GO:0051383,GO:0051455,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051726,GO:0051783,GO:0051983,GO:0060341,GO:0061982,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0071459,GO:0071840,GO:0090068,GO:0090231,GO:0090232,GO:0090266,GO:0090267,GO:0090268,GO:0097435,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:1901976,GO:1901978,GO:1901987,GO:1901990,GO:1902099,GO:1902850,GO:1903046,GO:1903047,GO:1903504,GO:1903827,GO:1903829,GO:1905340,GO:1905342,GO:1905818
Evalue	8.31e-60
EggNOG OGs	COG5185@1\|root,KOG0995@2759\|Eukaryota
Description	attachment of mitotic spindle microtubules to kinetochore
COG category	D
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8470	Gcaud8470	Gracilaria caudata M_176_S67 male	gene	NODE_1692_length_8986_cov_4.234626 7103..8893 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8470.t1.stop1	Gcaud8470.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1692_length_8986_cov_4.234626 7103..7105 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8470.t1.CDS1	Gcaud8470.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1692_length_8986_cov_4.234626 7103..8893 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8470.t1.exon1	Gcaud8470.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1692_length_8986_cov_4.234626 7103..8893 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8470.t1.start1	Gcaud8470.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1692_length_8986_cov_4.234626 8891..8893 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8470.t1	Gcaud8470.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1692_length_8986_cov_4.234626 7103..8893 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1692_length_8986_cov_4.234626:7103..8893-
coding sequence from alignment at NODE_1692_length_8986_cov_4.234626:7103..8893-

mRNA sequence

>Gcaud8470.t1 ID=Gcaud8470.t1|Name=Gcaud8470.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=597bp
MERSTLGALSRSKLNSRSSAGLPSRARASLAASKTADDRRASAFPSFGRP
RSTGGGAKTRQSSLSRSSLALSRAVKRSDPRALNDRAYMQKCAKELISFV
IERGYEHPISPKMLTSPSSKDFQALFLFLVRRIDPTFNFIKRFEDEIPAL
LRSLGYPFSISKSALSAVGSPHTWPTLLGVLTWLVNLLKYCEAYVAAQSS
APTMDPHARRERMFCDNTELAYDQFLKGADTFPELDAELEQHFSGENEKR
EREIEKLSSDREQLATTLHALKTQPSPLRLILEHKESLTTNIRKFKLLIP
SLVEHANAVRKMLREKEADVADLDIEITQLKQEKERLSDVLQRQEQEAID
MQQIAVERDSLRKALAKASSDRVNADAERTDAQQLVSIAQAELMELVKLY
NKSIETLQLDEPNMKLGLRENVQEEVLDKDVERNILPKLLAQKEHYATKA
PKLQEEIHLLRERGDEIEERLIFLRHSLGMLEAKKSKLETDYQAKKTHNN
DLLRQRQEMVLQGGEKIATERERLHELMRTRLKQFNDLQVQMNEYQHMRT
RYEKRWTRNIDECNVGFEDHQQACTKLLAKLGKYFEGRRDALVDEE*

spliced messenger RNA

>Gcaud8470.t1 ID=Gcaud8470.t1|Name=Gcaud8470.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at NODE_1692_length_8986_cov_4.234626:7103..8893- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGCTCCACATTAGGCGCGCTCTCGCGCAGCAAACTTAACAGCCG
TTCTTCCGCCGGTCTTCCGTCGCGCGCGCGCGCCAGTTTAGCAGCATCCA
AAACAGCCGACGATCGACGAGCCTCTGCCTTCCCATCCTTCGGTCGTCCG
CGTTCCACAGGTGGTGGCGCCAAGACCAGACAAAGCTCCTTATCACGTTC
TTCTCTGGCGTTGTCAAGAGCCGTCAAACGTTCCGATCCGCGCGCGCTGA
ATGATCGTGCGTACATGCAAAAATGCGCAAAGGAACTGATTTCGTTTGTG
ATTGAGCGCGGATATGAACATCCCATCTCTCCGAAAATGCTCACATCGCC
GTCTTCGAAGGACTTTCAGGCGTTGTTTTTGTTTCTTGTGCGTCGAATCG
ATCCTACGTTTAACTTCATCAAACGCTTTGAGGATGAGATTCCTGCATTG
CTGCGCAGTCTTGGCTACCCATTTTCCATCTCGAAAAGCGCTCTCAGCGC
CGTTGGCTCGCCGCATACGTGGCCCACGCTTCTGGGCGTGCTCACCTGGC
TCGTGAATCTACTCAAGTACTGTGAGGCTTATGTGGCGGCGCAAAGCTCC
GCGCCTACCATGGACCCGCATGCGCGTCGCGAGCGAATGTTTTGCGACAA
TACTGAGCTGGCGTACGACCAATTCCTCAAGGGCGCGGATACCTTTCCCG
AGCTTGACGCAGAGCTGGAGCAACACTTTTCTGGTGAGAATGAGAAGCGA
GAAAGAGAGATTGAGAAATTGTCCTCCGACCGCGAGCAATTGGCCACTAC
GCTGCATGCGTTGAAGACGCAACCCTCTCCGCTGCGCCTGATTTTGGAGC
ATAAGGAGTCTCTGACCACGAATATCAGGAAATTCAAGTTGCTTATTCCA
TCGCTTGTGGAACATGCCAATGCGGTGCGAAAGATGTTGAGGGAGAAGGA
GGCGGATGTAGCTGATTTGGATATCGAAATCACTCAATTGAAACAGGAGA
AGGAACGACTTTCTGACGTGCTGCAGCGACAGGAACAGGAGGCGATTGAC
ATGCAACAAATAGCTGTGGAGAGGGACAGCTTACGAAAAGCTTTGGCGAA
AGCGTCATCCGATCGAGTGAATGCGGACGCGGAACGTACCGATGCGCAGC
AACTGGTCTCGATTGCACAGGCAGAGTTGATGGAGCTTGTCAAGTTGTAC
AACAAATCCATCGAAACACTGCAACTGGATGAACCGAATATGAAGCTTGG
TTTGCGCGAAAACGTGCAGGAGGAGGTATTAGACAAGGACGTGGAGCGAA
ATATCTTGCCAAAGCTGTTGGCACAAAAGGAACACTATGCTACAAAAGCG
CCCAAGTTGCAGGAAGAGATTCATTTGCTGAGGGAACGCGGAGATGAGAT
CGAAGAACGACTCATCTTTTTGAGACACTCTTTAGGAATGCTTGAGGCGA
AGAAAAGCAAACTTGAGACCGATTATCAAGCAAAGAAAACCCATAATAAT
GATTTGTTGAGACAAAGACAAGAAATGGTTCTACAGGGCGGCGAGAAAAT
TGCCACTGAACGAGAACGACTGCACGAATTAATGAGAACGCGATTGAAGC
AGTTTAACGATTTGCAAGTTCAGATGAATGAGTATCAACATATGCGTACG
AGATATGAGAAACGATGGACAAGGAACATTGATGAGTGTAACGTTGGTTT
TGAGGACCATCAGCAAGCTTGCACTAAATTGTTGGCAAAGCTCGGAAAGT
ACTTTGAAGGGAGGCGAGATGCGTTGGTGGATGAGGAATGA

protein sequence of Gcaud8470.t1

>Gcaud8470.t1 ID=Gcaud8470.t1|Name=Gcaud8470.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=597bp
MERSTLGALSRSKLNSRSSAGLPSRARASLAASKTADDRRASAFPSFGRP
RSTGGGAKTRQSSLSRSSLALSRAVKRSDPRALNDRAYMQKCAKELISFV
IERGYEHPISPKMLTSPSSKDFQALFLFLVRRIDPTFNFIKRFEDEIPAL
LRSLGYPFSISKSALSAVGSPHTWPTLLGVLTWLVNLLKYCEAYVAAQSS
APTMDPHARRERMFCDNTELAYDQFLKGADTFPELDAELEQHFSGENEKR
EREIEKLSSDREQLATTLHALKTQPSPLRLILEHKESLTTNIRKFKLLIP
SLVEHANAVRKMLREKEADVADLDIEITQLKQEKERLSDVLQRQEQEAID
MQQIAVERDSLRKALAKASSDRVNADAERTDAQQLVSIAQAELMELVKLY
NKSIETLQLDEPNMKLGLRENVQEEVLDKDVERNILPKLLAQKEHYATKA
PKLQEEIHLLRERGDEIEERLIFLRHSLGMLEAKKSKLETDYQAKKTHNN
DLLRQRQEMVLQGGEKIATERERLHELMRTRLKQFNDLQVQMNEYQHMRT
RYEKRWTRNIDECNVGFEDHQQACTKLLAKLGKYFEGRRDALVDEE*

mRNA from alignment at NODE_1692_length_8986_cov_4.234626:7103..8893-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8470.t1 ID=Gcaud8470.t1|Name=Gcaud8470.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at NODE_1692_length_8986_cov_4.234626:7103..8893- (Gracilaria caudata M_176_S67 male)
ATGGAGCGCTCCACATTAGGCGCGCTCTCGCGCAGCAAACTTAACAGCCG
TTCTTCCGCCGGTCTTCCGTCGCGCGCGCGCGCCAGTTTAGCAGCATCCA
AAACAGCCGACGATCGACGAGCCTCTGCCTTCCCATCCTTCGGTCGTCCG
CGTTCCACAGGTGGTGGCGCCAAGACCAGACAAAGCTCCTTATCACGTTC
TTCTCTGGCGTTGTCAAGAGCCGTCAAACGTTCCGATCCGCGCGCGCTGA
ATGATCGTGCGTACATGCAAAAATGCGCAAAGGAACTGATTTCGTTTGTG
ATTGAGCGCGGATATGAACATCCCATCTCTCCGAAAATGCTCACATCGCC
GTCTTCGAAGGACTTTCAGGCGTTGTTTTTGTTTCTTGTGCGTCGAATCG
ATCCTACGTTTAACTTCATCAAACGCTTTGAGGATGAGATTCCTGCATTG
CTGCGCAGTCTTGGCTACCCATTTTCCATCTCGAAAAGCGCTCTCAGCGC
CGTTGGCTCGCCGCATACGTGGCCCACGCTTCTGGGCGTGCTCACCTGGC
TCGTGAATCTACTCAAGTACTGTGAGGCTTATGTGGCGGCGCAAAGCTCC
GCGCCTACCATGGACCCGCATGCGCGTCGCGAGCGAATGTTTTGCGACAA
TACTGAGCTGGCGTACGACCAATTCCTCAAGGGCGCGGATACCTTTCCCG
AGCTTGACGCAGAGCTGGAGCAACACTTTTCTGGTGAGAATGAGAAGCGA
GAAAGAGAGATTGAGAAATTGTCCTCCGACCGCGAGCAATTGGCCACTAC
GCTGCATGCGTTGAAGACGCAACCCTCTCCGCTGCGCCTGATTTTGGAGC
ATAAGGAGTCTCTGACCACGAATATCAGGAAATTCAAGTTGCTTATTCCA
TCGCTTGTGGAACATGCCAATGCGGTGCGAAAGATGTTGAGGGAGAAGGA
GGCGGATGTAGCTGATTTGGATATCGAAATCACTCAATTGAAACAGGAGA
AGGAACGACTTTCTGACGTGCTGCAGCGACAGGAACAGGAGGCGATTGAC
ATGCAACAAATAGCTGTGGAGAGGGACAGCTTACGAAAAGCTTTGGCGAA
AGCGTCATCCGATCGAGTGAATGCGGACGCGGAACGTACCGATGCGCAGC
AACTGGTCTCGATTGCACAGGCAGAGTTGATGGAGCTTGTCAAGTTGTAC
AACAAATCCATCGAAACACTGCAACTGGATGAACCGAATATGAAGCTTGG
TTTGCGCGAAAACGTGCAGGAGGAGGTATTAGACAAGGACGTGGAGCGAA
ATATCTTGCCAAAGCTGTTGGCACAAAAGGAACACTATGCTACAAAAGCG
CCCAAGTTGCAGGAAGAGATTCATTTGCTGAGGGAACGCGGAGATGAGAT
CGAAGAACGACTCATCTTTTTGAGACACTCTTTAGGAATGCTTGAGGCGA
AGAAAAGCAAACTTGAGACCGATTATCAAGCAAAGAAAACCCATAATAAT
GATTTGTTGAGACAAAGACAAGAAATGGTTCTACAGGGCGGCGAGAAAAT
TGCCACTGAACGAGAACGACTGCACGAATTAATGAGAACGCGATTGAAGC
AGTTTAACGATTTGCAAGTTCAGATGAATGAGTATCAACATATGCGTACG
AGATATGAGAAACGATGGACAAGGAACATTGATGAGTGTAACGTTGGTTT
TGAGGACCATCAGCAAGCTTGCACTAAATTGTTGGCAAAGCTCGGAAAGT
ACTTTGAAGGGAGGCGAGATGCGTTGGTGGATGAGGAATGA

Coding sequence (CDS) from alignment at NODE_1692_length_8986_cov_4.234626:7103..8893-

>Gcaud8470.t1 ID=Gcaud8470.t1|Name=Gcaud8470.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1791bp|location=Sequence derived from alignment at NODE_1692_length_8986_cov_4.234626:7103..8893- (Gracilaria caudata M_176_S67 male)
ATGGAGCGCTCCACATTAGGCGCGCTCTCGCGCAGCAAACTTAACAGCCG
TTCTTCCGCCGGTCTTCCGTCGCGCGCGCGCGCCAGTTTAGCAGCATCCA
AAACAGCCGACGATCGACGAGCCTCTGCCTTCCCATCCTTCGGTCGTCCG
CGTTCCACAGGTGGTGGCGCCAAGACCAGACAAAGCTCCTTATCACGTTC
TTCTCTGGCGTTGTCAAGAGCCGTCAAACGTTCCGATCCGCGCGCGCTGA
ATGATCGTGCGTACATGCAAAAATGCGCAAAGGAACTGATTTCGTTTGTG
ATTGAGCGCGGATATGAACATCCCATCTCTCCGAAAATGCTCACATCGCC
GTCTTCGAAGGACTTTCAGGCGTTGTTTTTGTTTCTTGTGCGTCGAATCG
ATCCTACGTTTAACTTCATCAAACGCTTTGAGGATGAGATTCCTGCATTG
CTGCGCAGTCTTGGCTACCCATTTTCCATCTCGAAAAGCGCTCTCAGCGC
CGTTGGCTCGCCGCATACGTGGCCCACGCTTCTGGGCGTGCTCACCTGGC
TCGTGAATCTACTCAAGTACTGTGAGGCTTATGTGGCGGCGCAAAGCTCC
GCGCCTACCATGGACCCGCATGCGCGTCGCGAGCGAATGTTTTGCGACAA
TACTGAGCTGGCGTACGACCAATTCCTCAAGGGCGCGGATACCTTTCCCG
AGCTTGACGCAGAGCTGGAGCAACACTTTTCTGGTGAGAATGAGAAGCGA
GAAAGAGAGATTGAGAAATTGTCCTCCGACCGCGAGCAATTGGCCACTAC
GCTGCATGCGTTGAAGACGCAACCCTCTCCGCTGCGCCTGATTTTGGAGC
ATAAGGAGTCTCTGACCACGAATATCAGGAAATTCAAGTTGCTTATTCCA
TCGCTTGTGGAACATGCCAATGCGGTGCGAAAGATGTTGAGGGAGAAGGA
GGCGGATGTAGCTGATTTGGATATCGAAATCACTCAATTGAAACAGGAGA
AGGAACGACTTTCTGACGTGCTGCAGCGACAGGAACAGGAGGCGATTGAC
ATGCAACAAATAGCTGTGGAGAGGGACAGCTTACGAAAAGCTTTGGCGAA
AGCGTCATCCGATCGAGTGAATGCGGACGCGGAACGTACCGATGCGCAGC
AACTGGTCTCGATTGCACAGGCAGAGTTGATGGAGCTTGTCAAGTTGTAC
AACAAATCCATCGAAACACTGCAACTGGATGAACCGAATATGAAGCTTGG
TTTGCGCGAAAACGTGCAGGAGGAGGTATTAGACAAGGACGTGGAGCGAA
ATATCTTGCCAAAGCTGTTGGCACAAAAGGAACACTATGCTACAAAAGCG
CCCAAGTTGCAGGAAGAGATTCATTTGCTGAGGGAACGCGGAGATGAGAT
CGAAGAACGACTCATCTTTTTGAGACACTCTTTAGGAATGCTTGAGGCGA
AGAAAAGCAAACTTGAGACCGATTATCAAGCAAAGAAAACCCATAATAAT
GATTTGTTGAGACAAAGACAAGAAATGGTTCTACAGGGCGGCGAGAAAAT
TGCCACTGAACGAGAACGACTGCACGAATTAATGAGAACGCGATTGAAGC
AGTTTAACGATTTGCAAGTTCAGATGAATGAGTATCAACATATGCGTACG
AGATATGAGAAACGATGGACAAGGAACATTGATGAGTGTAACGTTGGTTT
TGAGGACCATCAGCAAGCTTGCACTAAATTGTTGGCAAAGCTCGGAAAGT
ACTTTGAAGGGAGGCGAGATGCGTTGGTGGATGAGGAATGA