Gcaud8431.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8431.t1
Unique Name	Gcaud8431.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	202

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_248_length_34309_cov_4.396809	contig	NODE_248_length_34309_cov_4.396809:32871..33532 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8431	Gcaud8431	Gracilaria caudata M_176_S67 male	gene	NODE_248_length_34309_cov_4.396809 32871..33532 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8431.t1	Gcaud8431.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_248_length_34309_cov_4.396809 32871..33532 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8431.t1.stop1	Gcaud8431.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_248_length_34309_cov_4.396809 32871..32873 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8431.t1.CDS1	Gcaud8431.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_248_length_34309_cov_4.396809 32871..32893 -
Gcaud8431.t1.CDS2	Gcaud8431.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_248_length_34309_cov_4.396809 32950..33532 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8431.t1.exon1	Gcaud8431.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_248_length_34309_cov_4.396809 32871..32893 -
Gcaud8431.t1.exon2	Gcaud8431.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_248_length_34309_cov_4.396809 32950..33532 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8431.t1.intron1	Gcaud8431.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_248_length_34309_cov_4.396809 32894..32949 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8431.t1.start1	Gcaud8431.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_248_length_34309_cov_4.396809 33530..33532 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_248_length_34309_cov_4.396809:32871..33532-
coding sequence from alignment at NODE_248_length_34309_cov_4.396809:32871..33532-

mRNA sequence

>Gcaud8431.t1 ID=Gcaud8431.t1|Name=Gcaud8431.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=202bp
MVSSSTQRAQGGNILNIGESSGVNRKEKVEENSEPLWIQATEVVIVAMKE
GSEERGTYTNDEIWQEFGKLVTDMLFKERKRGYEKNYTAGERERREANDM
RLVECVKDGLSRMGSSTSGTTKQSLVRLVARGAEEGQSRGRSRFLRGCQK
KLFQLADGAEENKTPVNIKEECGKCVVETCSRVLGQYNADGHRAVKKDET
N*

spliced messenger RNA

>Gcaud8431.t1 ID=Gcaud8431.t1|Name=Gcaud8431.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=606bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:32871..33532- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAGCAGCAGCACACAACGTGCACAAGGAGGGAACATCTTAAACAT
TGGGGAGAGTAGTGGGGTGAACAGAAAGGAGAAGGTTGAGGAAAACAGCG
AACCTCTGTGGATACAAGCGACAGAGGTTGTCATTGTCGCTATGAAAGAA
GGATCTGAAGAGCGCGGAACATACACAAACGACGAAATCTGGCAGGAGTT
TGGGAAGTTGGTGACGGACATGTTGTTTAAGGAAAGAAAACGTGGCTATG
AAAAGAACTACACTGCCGGGGAACGCGAACGACGAGAAGCGAATGATATG
CGATTGGTGGAATGCGTTAAAGACGGGTTGAGCCGTATGGGGTCAAGCAC
TTCAGGGACAACAAAGCAAAGCCTAGTTCGTCTCGTGGCCAGAGGTGCAG
AAGAAGGCCAGAGTCGAGGTCGATCGCGTTTCTTGAGAGGTTGTCAAAAG
AAGCTGTTCCAGCTTGCAGATGGGGCGGAAGAAAACAAGACTCCCGTCAA
CATCAAAGAGGAATGCGGAAAGTGCGTAGTTGAAACCTGTTCAAGAGTTC
TCGGACAGTATAATGCAGATGGTCATCGTGCTGTTAAGAAAGATGAGACG
AACTGA

protein sequence of Gcaud8431.t1

>Gcaud8431.t1 ID=Gcaud8431.t1|Name=Gcaud8431.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=202bp
MVSSSTQRAQGGNILNIGESSGVNRKEKVEENSEPLWIQATEVVIVAMKE
GSEERGTYTNDEIWQEFGKLVTDMLFKERKRGYEKNYTAGERERREANDM
RLVECVKDGLSRMGSSTSGTTKQSLVRLVARGAEEGQSRGRSRFLRGCQK
KLFQLADGAEENKTPVNIKEECGKCVVETCSRVLGQYNADGHRAVKKDET
N*

mRNA from alignment at NODE_248_length_34309_cov_4.396809:32871..33532-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8431.t1 ID=Gcaud8431.t1|Name=Gcaud8431.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=662bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:32871..33532- (Gracilaria caudata M_176_S67 male)
ATGGTGAGCAGCAGCACACAACGTGCACAAGGAGGGAACATCTTAAACAT
TGGGGAGAGTAGTGGGGTGAACAGAAAGGAGAAGGTTGAGGAAAACAGCG
AACCTCTGTGGATACAAGCGACAGAGGTTGTCATTGTCGCTATGAAAGAA
GGATCTGAAGAGCGCGGAACATACACAAACGACGAAATCTGGCAGGAGTT
TGGGAAGTTGGTGACGGACATGTTGTTTAAGGAAAGAAAACGTGGCTATG
AAAAGAACTACACTGCCGGGGAACGCGAACGACGAGAAGCGAATGATATG
CGATTGGTGGAATGCGTTAAAGACGGGTTGAGCCGTATGGGGTCAAGCAC
TTCAGGGACAACAAAGCAAAGCCTAGTTCGTCTCGTGGCCAGAGGTGCAG
AAGAAGGCCAGAGTCGAGGTCGATCGCGTTTCTTGAGAGGTTGTCAAAAG
AAGCTGTTCCAGCTTGCAGATGGGGCGGAAGAAAACAAGACTCCCGTCAA
CATCAAAGAGGAATGCGGAAAGTGCGTAGTTGAAACCTGTTCAAGAGTTC
TCGGACAGTATAATGCAGATGGTCATCGTGCTGGTAAGTGTCCGTTGCCG
GCTGGTCGAAGGCCCGAAGCTGTGTTTCTATTGCAGCAGTTAAGAAAGAT
GAGACGAACTGA

Coding sequence (CDS) from alignment at NODE_248_length_34309_cov_4.396809:32871..33532-

>Gcaud8431.t1 ID=Gcaud8431.t1|Name=Gcaud8431.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=606bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:32871..33532- (Gracilaria caudata M_176_S67 male)
ATGGTGAGCAGCAGCACACAACGTGCACAAGGAGGGAACATCTTAAACAT
TGGGGAGAGTAGTGGGGTGAACAGAAAGGAGAAGGTTGAGGAAAACAGCG
AACCTCTGTGGATACAAGCGACAGAGGTTGTCATTGTCGCTATGAAAGAA
GGATCTGAAGAGCGCGGAACATACACAAACGACGAAATCTGGCAGGAGTT
TGGGAAGTTGGTGACGGACATGTTGTTTAAGGAAAGAAAACGTGGCTATG
AAAAGAACTACACTGCCGGGGAACGCGAACGACGAGAAGCGAATGATATG
CGATTGGTGGAATGCGTTAAAGACGGGTTGAGCCGTATGGGGTCAAGCAC
TTCAGGGACAACAAAGCAAAGCCTAGTTCGTCTCGTGGCCAGAGGTGCAG
AAGAAGGCCAGAGTCGAGGTCGATCGCGTTTCTTGAGAGGTTGTCAAAAG
AAGCTGTTCCAGCTTGCAGATGGGGCGGAAGAAAACAAGACTCCCGTCAA
CATCAAAGAGGAATGCGGAAAGTGCGTAGTTGAAACCTGTTCAAGAGTTC
TCGGACAGTATAATGCAGATGGTCATCGTGCTGTTAAGAAAGATGAGACG
AACTGA