Gcaud8428.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8428.t1
Unique Name	Gcaud8428.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	564

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_248_length_34309_cov_4.396809	contig	NODE_248_length_34309_cov_4.396809:14439..16130 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1328313.DS2_18273
PFAMs	Big_2,UnbV_ASPIC,VCBS
Max annot lvl	1236\|Gammaproteobacteria
Evalue	1.43e-44
EggNOG OGs	COG2931@1\|root,COG5492@1\|root,COG2931@2\|Bacteria,COG5492@2\|Bacteria,1R7ZV@1224\|Proteobacteria,1RPUG@1236\|Gammaproteobacteria,464WY@72275\|Alteromonadaceae
Description	ASPIC and UnbV
COG category	NQ

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8428	Gcaud8428	Gracilaria caudata M_176_S67 male	gene	NODE_248_length_34309_cov_4.396809 14439..16130 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8428.t1.stop1	Gcaud8428.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_248_length_34309_cov_4.396809 14439..14441 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8428.t1.CDS1	Gcaud8428.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_248_length_34309_cov_4.396809 14439..16130 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8428.t1.exon1	Gcaud8428.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_248_length_34309_cov_4.396809 14439..16130 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8428.t1.start1	Gcaud8428.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_248_length_34309_cov_4.396809 16128..16130 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8428.t1	Gcaud8428.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_248_length_34309_cov_4.396809 14439..16130 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_248_length_34309_cov_4.396809:14439..16130-
coding sequence from alignment at NODE_248_length_34309_cov_4.396809:14439..16130-

mRNA sequence

>Gcaud8428.t1 ID=Gcaud8428.t1|Name=Gcaud8428.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=564bp
MLSSSEQSQSSYVVHPDSEKFPNASFRIRKLVFFVVLSVAVVVVVLIPII
VLAGGSRQQETSSVESAASESNALGPLLPSFKDTTASAGFNSDAPRYKLY
GGPTVVDLDRDGFPDVLLCYHDSTYVKLLFNQRNGSFIDSPWGAWFDTHG
IVATPISPFTSNMRFSLSVGGSIGRNPRPPYMYEVDSATREVTNVTDQMG
ITLNGGRGRTALYADLSNGQHPQYPDALFLNAEPNDEQALHHFAYENIEG
EFYQHRDIAGNFTQSQNALATVTDIDNDGTMEIITYGELSVWQIVGPFEF
EEITSRVLPEGLARRGTVAIAELDFDNDGDFDLYVARRKSWWHHENTFHD
YLLENRDGQYVDIGEQAGLPRNTSSRGVTVGDFNNDGWIDILVVQQNGPD
VFLFNNGNGTFRTVDGLLEKRAGGEGDHAVGVDYDMDGKLDIMYGEGNHN
NATGSYRLWRNTMKVSSTASKNFVHVRVGNAPDLSCTPLNAVIQVDAGAL
SMVRRVASPGDSIAHSYLETQHFGIGPAKKIDLISVNYTNGLQLTLRDVR
PGALVQIGEFAVR*

spliced messenger RNA

>Gcaud8428.t1 ID=Gcaud8428.t1|Name=Gcaud8428.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1692bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:14439..16130- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTCCAGCTCTGAACAAAGTCAATCCTCGTATGTCGTACACCCCGA
TTCTGAAAAGTTTCCGAATGCAAGCTTTCGCATTCGCAAATTGGTGTTTT
TCGTCGTGCTTTCTGTTGCTGTTGTGGTTGTTGTTTTAATACCCATTATT
GTGCTAGCTGGTGGGTCCAGACAACAAGAAACGTCATCCGTTGAGAGTGC
TGCCTCTGAGAGCAATGCTCTCGGGCCTTTGCTTCCCAGTTTCAAAGATA
CAACAGCCTCAGCGGGTTTCAATTCAGATGCACCAAGGTATAAATTATAC
GGTGGTCCTACTGTGGTGGACCTTGATCGCGACGGCTTTCCAGATGTGCT
TCTGTGCTACCATGATTCTACCTATGTCAAGCTACTGTTCAATCAAAGAA
ATGGTTCATTCATCGATTCCCCGTGGGGAGCATGGTTTGATACGCACGGG
ATTGTAGCCACTCCAATATCACCTTTCACTTCGAACATGCGCTTTTCGCT
TTCTGTTGGTGGCAGCATCGGAAGAAATCCAAGGCCTCCCTACATGTATG
AAGTAGACAGCGCCACTCGAGAGGTAACTAACGTTACGGATCAAATGGGT
ATAACACTAAACGGAGGGAGAGGACGAACAGCATTGTATGCTGATCTATC
GAATGGGCAACATCCGCAATATCCAGACGCGCTTTTCCTCAACGCCGAGC
CGAACGACGAGCAGGCGCTTCATCACTTCGCGTATGAGAATATTGAAGGT
GAATTTTACCAACATCGAGATATAGCTGGGAACTTTACGCAATCCCAAAA
CGCTCTGGCTACTGTGACGGATATTGATAATGATGGTACGATGGAGATCA
TCACGTATGGGGAACTGAGTGTGTGGCAAATAGTGGGACCGTTCGAGTTT
GAAGAGATAACGTCTCGAGTTCTACCGGAAGGTCTTGCTCGAAGAGGAAC
TGTAGCAATAGCGGAACTGGACTTTGACAACGATGGGGACTTTGACTTGT
ATGTGGCGCGTAGAAAGTCTTGGTGGCACCATGAAAACACGTTCCACGAC
TACCTCTTGGAAAACCGCGATGGACAGTATGTGGATATTGGCGAACAGGC
TGGATTACCACGGAATACATCGTCAAGAGGCGTCACTGTGGGCGACTTTA
ACAATGATGGCTGGATAGACATTCTAGTTGTGCAGCAGAATGGACCCGAC
GTGTTCCTGTTCAACAACGGAAACGGGACATTCCGAACGGTGGACGGTCT
GTTGGAAAAGAGAGCGGGGGGGGAGGGAGATCACGCTGTGGGCGTGGACT
ACGACATGGACGGGAAGTTGGACATCATGTACGGCGAGGGGAATCACAAC
AATGCCACGGGAAGCTACAGACTGTGGCGGAACACGATGAAGGTGAGCTC
GACGGCATCCAAGAACTTCGTCCACGTGCGCGTGGGTAACGCGCCGGACC
TCTCGTGCACGCCGCTCAACGCGGTGATTCAGGTTGACGCGGGCGCGCTT
TCCATGGTGCGCCGCGTCGCGTCGCCAGGCGACTCCATCGCGCATTCGTA
TCTCGAGACGCAGCACTTTGGCATAGGCCCCGCCAAAAAGATAGATCTGA
TCTCGGTCAATTACACCAACGGCTTACAGTTGACGCTCAGGGATGTTCGC
CCGGGCGCGTTGGTTCAGATTGGCGAGTTTGCAGTGCGATAG

protein sequence of Gcaud8428.t1

>Gcaud8428.t1 ID=Gcaud8428.t1|Name=Gcaud8428.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=564bp
MLSSSEQSQSSYVVHPDSEKFPNASFRIRKLVFFVVLSVAVVVVVLIPII
VLAGGSRQQETSSVESAASESNALGPLLPSFKDTTASAGFNSDAPRYKLY
GGPTVVDLDRDGFPDVLLCYHDSTYVKLLFNQRNGSFIDSPWGAWFDTHG
IVATPISPFTSNMRFSLSVGGSIGRNPRPPYMYEVDSATREVTNVTDQMG
ITLNGGRGRTALYADLSNGQHPQYPDALFLNAEPNDEQALHHFAYENIEG
EFYQHRDIAGNFTQSQNALATVTDIDNDGTMEIITYGELSVWQIVGPFEF
EEITSRVLPEGLARRGTVAIAELDFDNDGDFDLYVARRKSWWHHENTFHD
YLLENRDGQYVDIGEQAGLPRNTSSRGVTVGDFNNDGWIDILVVQQNGPD
VFLFNNGNGTFRTVDGLLEKRAGGEGDHAVGVDYDMDGKLDIMYGEGNHN
NATGSYRLWRNTMKVSSTASKNFVHVRVGNAPDLSCTPLNAVIQVDAGAL
SMVRRVASPGDSIAHSYLETQHFGIGPAKKIDLISVNYTNGLQLTLRDVR
PGALVQIGEFAVR*

mRNA from alignment at NODE_248_length_34309_cov_4.396809:14439..16130-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8428.t1 ID=Gcaud8428.t1|Name=Gcaud8428.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1692bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:14439..16130- (Gracilaria caudata M_176_S67 male)
ATGCTCTCCAGCTCTGAACAAAGTCAATCCTCGTATGTCGTACACCCCGA
TTCTGAAAAGTTTCCGAATGCAAGCTTTCGCATTCGCAAATTGGTGTTTT
TCGTCGTGCTTTCTGTTGCTGTTGTGGTTGTTGTTTTAATACCCATTATT
GTGCTAGCTGGTGGGTCCAGACAACAAGAAACGTCATCCGTTGAGAGTGC
TGCCTCTGAGAGCAATGCTCTCGGGCCTTTGCTTCCCAGTTTCAAAGATA
CAACAGCCTCAGCGGGTTTCAATTCAGATGCACCAAGGTATAAATTATAC
GGTGGTCCTACTGTGGTGGACCTTGATCGCGACGGCTTTCCAGATGTGCT
TCTGTGCTACCATGATTCTACCTATGTCAAGCTACTGTTCAATCAAAGAA
ATGGTTCATTCATCGATTCCCCGTGGGGAGCATGGTTTGATACGCACGGG
ATTGTAGCCACTCCAATATCACCTTTCACTTCGAACATGCGCTTTTCGCT
TTCTGTTGGTGGCAGCATCGGAAGAAATCCAAGGCCTCCCTACATGTATG
AAGTAGACAGCGCCACTCGAGAGGTAACTAACGTTACGGATCAAATGGGT
ATAACACTAAACGGAGGGAGAGGACGAACAGCATTGTATGCTGATCTATC
GAATGGGCAACATCCGCAATATCCAGACGCGCTTTTCCTCAACGCCGAGC
CGAACGACGAGCAGGCGCTTCATCACTTCGCGTATGAGAATATTGAAGGT
GAATTTTACCAACATCGAGATATAGCTGGGAACTTTACGCAATCCCAAAA
CGCTCTGGCTACTGTGACGGATATTGATAATGATGGTACGATGGAGATCA
TCACGTATGGGGAACTGAGTGTGTGGCAAATAGTGGGACCGTTCGAGTTT
GAAGAGATAACGTCTCGAGTTCTACCGGAAGGTCTTGCTCGAAGAGGAAC
TGTAGCAATAGCGGAACTGGACTTTGACAACGATGGGGACTTTGACTTGT
ATGTGGCGCGTAGAAAGTCTTGGTGGCACCATGAAAACACGTTCCACGAC
TACCTCTTGGAAAACCGCGATGGACAGTATGTGGATATTGGCGAACAGGC
TGGATTACCACGGAATACATCGTCAAGAGGCGTCACTGTGGGCGACTTTA
ACAATGATGGCTGGATAGACATTCTAGTTGTGCAGCAGAATGGACCCGAC
GTGTTCCTGTTCAACAACGGAAACGGGACATTCCGAACGGTGGACGGTCT
GTTGGAAAAGAGAGCGGGGGGGGAGGGAGATCACGCTGTGGGCGTGGACT
ACGACATGGACGGGAAGTTGGACATCATGTACGGCGAGGGGAATCACAAC
AATGCCACGGGAAGCTACAGACTGTGGCGGAACACGATGAAGGTGAGCTC
GACGGCATCCAAGAACTTCGTCCACGTGCGCGTGGGTAACGCGCCGGACC
TCTCGTGCACGCCGCTCAACGCGGTGATTCAGGTTGACGCGGGCGCGCTT
TCCATGGTGCGCCGCGTCGCGTCGCCAGGCGACTCCATCGCGCATTCGTA
TCTCGAGACGCAGCACTTTGGCATAGGCCCCGCCAAAAAGATAGATCTGA
TCTCGGTCAATTACACCAACGGCTTACAGTTGACGCTCAGGGATGTTCGC
CCGGGCGCGTTGGTTCAGATTGGCGAGTTTGCAGTGCGATAG

Coding sequence (CDS) from alignment at NODE_248_length_34309_cov_4.396809:14439..16130-

>Gcaud8428.t1 ID=Gcaud8428.t1|Name=Gcaud8428.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1692bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:14439..16130- (Gracilaria caudata M_176_S67 male)
ATGCTCTCCAGCTCTGAACAAAGTCAATCCTCGTATGTCGTACACCCCGA
TTCTGAAAAGTTTCCGAATGCAAGCTTTCGCATTCGCAAATTGGTGTTTT
TCGTCGTGCTTTCTGTTGCTGTTGTGGTTGTTGTTTTAATACCCATTATT
GTGCTAGCTGGTGGGTCCAGACAACAAGAAACGTCATCCGTTGAGAGTGC
TGCCTCTGAGAGCAATGCTCTCGGGCCTTTGCTTCCCAGTTTCAAAGATA
CAACAGCCTCAGCGGGTTTCAATTCAGATGCACCAAGGTATAAATTATAC
GGTGGTCCTACTGTGGTGGACCTTGATCGCGACGGCTTTCCAGATGTGCT
TCTGTGCTACCATGATTCTACCTATGTCAAGCTACTGTTCAATCAAAGAA
ATGGTTCATTCATCGATTCCCCGTGGGGAGCATGGTTTGATACGCACGGG
ATTGTAGCCACTCCAATATCACCTTTCACTTCGAACATGCGCTTTTCGCT
TTCTGTTGGTGGCAGCATCGGAAGAAATCCAAGGCCTCCCTACATGTATG
AAGTAGACAGCGCCACTCGAGAGGTAACTAACGTTACGGATCAAATGGGT
ATAACACTAAACGGAGGGAGAGGACGAACAGCATTGTATGCTGATCTATC
GAATGGGCAACATCCGCAATATCCAGACGCGCTTTTCCTCAACGCCGAGC
CGAACGACGAGCAGGCGCTTCATCACTTCGCGTATGAGAATATTGAAGGT
GAATTTTACCAACATCGAGATATAGCTGGGAACTTTACGCAATCCCAAAA
CGCTCTGGCTACTGTGACGGATATTGATAATGATGGTACGATGGAGATCA
TCACGTATGGGGAACTGAGTGTGTGGCAAATAGTGGGACCGTTCGAGTTT
GAAGAGATAACGTCTCGAGTTCTACCGGAAGGTCTTGCTCGAAGAGGAAC
TGTAGCAATAGCGGAACTGGACTTTGACAACGATGGGGACTTTGACTTGT
ATGTGGCGCGTAGAAAGTCTTGGTGGCACCATGAAAACACGTTCCACGAC
TACCTCTTGGAAAACCGCGATGGACAGTATGTGGATATTGGCGAACAGGC
TGGATTACCACGGAATACATCGTCAAGAGGCGTCACTGTGGGCGACTTTA
ACAATGATGGCTGGATAGACATTCTAGTTGTGCAGCAGAATGGACCCGAC
GTGTTCCTGTTCAACAACGGAAACGGGACATTCCGAACGGTGGACGGTCT
GTTGGAAAAGAGAGCGGGGGGGGAGGGAGATCACGCTGTGGGCGTGGACT
ACGACATGGACGGGAAGTTGGACATCATGTACGGCGAGGGGAATCACAAC
AATGCCACGGGAAGCTACAGACTGTGGCGGAACACGATGAAGGTGAGCTC
GACGGCATCCAAGAACTTCGTCCACGTGCGCGTGGGTAACGCGCCGGACC
TCTCGTGCACGCCGCTCAACGCGGTGATTCAGGTTGACGCGGGCGCGCTT
TCCATGGTGCGCCGCGTCGCGTCGCCAGGCGACTCCATCGCGCATTCGTA
TCTCGAGACGCAGCACTTTGGCATAGGCCCCGCCAAAAAGATAGATCTGA
TCTCGGTCAATTACACCAACGGCTTACAGTTGACGCTCAGGGATGTTCGC
CCGGGCGCGTTGGTTCAGATTGGCGAGTTTGCAGTGCGATAG