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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud8424.t1.start1 | Gcaud8424.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_248_length_34309_cov_4.396809 2110..2112 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud8424.t1.stop1 | Gcaud8424.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_248_length_34309_cov_4.396809 4004..4006 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud8424.t1 ID=Gcaud8424.t1|Name=Gcaud8424.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=479bp
MHRTLWVLSAILSVSAAVEIANALTGTSLRCCVVHEPPIAFLDEKEYVNG
GISGVVAEYLREMQALLGWNCSEVTPYQYGSGTTAFNNFIDMMENCAVNG
TTRIDDQCQCDIGISGWLPTAGRYDRVDLLPPFAQDGFRVIFDISVSNTS
INSLFFLTTFDVASWACIFSIILLFTICKLLDHRFAPFVSQRHPQASDSY
LSRLFRGIQNKPLLYRFPRAFLSVFKAMITHMTASLVQEQITSEFRSVED
FRSCRIPPEVVCIPDGGAIDTYWNHSIAAGNECHKGRSPRRGSLADSYED
AIRGLCRYGILLDSTARLAVNGLYCGRFLLSDNLLTSGLSLVLPKGSNLT
RAMSIATLKITEELSPPSVERYFRNIDKCNVETSSILPLRKLVLFFVLAF
SCCGAYILAMILKNMLRRDRSAKRQSAPKLVEESLSREYTILKLGNLARS
LSYLSDDRSALGDVSTQQKRREVHDWLL* back to topspliced messenger RNA >Gcaud8424.t1 ID=Gcaud8424.t1|Name=Gcaud8424.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1437bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:2110..4006+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCATCGGACGCTTTGGGTGCTTAGTGCCATTCTATCCGTCTCCGCAGC
CGTCGAAATTGCCAATGCTTTGACCGGGACTTCGCTTCGCTGTTGCGTCG
TACACGAGCCTCCAATTGCCTTCCTCGATGAGAAGGAGTATGTCAACGGT
GGAATCAGTGGCGTGGTTGCCGAGTACTTGAGAGAAATGCAGGCTCTTCT
CGGTTGGAACTGCTCAGAAGTGACGCCGTACCAGTATGGTAGCGGCACAA
CTGCCTTCAACAACTTCATTGACATGATGGAGAACTGCGCAGTCAATGGT
ACTACCAGAATTGACGACCAATGCCAATGCGACATTGGCATTAGTGGTTG
GCTCCCCACTGCAGGTCGATACGACCGCGTTGACCTGTTGCCACCTTTCG
CTCAAGACGGGTTTCGGGTAATCTTCGATATATCGGTTTCCAACACATCT
ATCAACAGCCTGTTCTTCCTCACTACATTTGACGTGGCATCATGGGCTTG
CATTTTCTCTATAATCTTGCTTTTTACTATATGCAAACTTCTCGACCATC
GCTTTGCACCGTTTGTATCACAACGGCACCCGCAAGCAAGTGACTCGTAC
CTTTCGCGTCTTTTCCGAGGTATTCAGAACAAGCCTCTGCTGTATCGGTT
TCCACGGGCCTTCTTGAGTGTGTTTAAGGCCAtgatcactcaTATGACAG
CCTCGCTTGTCCAAGAACAGATCACGTCGGAATTTCGATCAGTGGAGGAC
TTTAGGAGCTGCCGCATTCCACCAGAAGTAGTGTGTATTCCTGACGGGGG
AGCGATTGACACCTACTGGAATCATTCGATTGCGGCGGGCAAtgagtgtc
acaagggaaggtcgccccgccgaggttcattagcggacagttacgAAGAC
GCGATAAGGGGCTTATGCCGATACGGAATCTTACTGGATTCGACGGCGAG
GTTAGCCGTTAACGGTCTCTATTGCGGGCGATTTCTACTGAGCGACAATC
TGCTAACCAGTGGATTATCTCTCGTGCTGCCCAAGGGATCGAATTTGACA
CGCGCCATGAGCATCGCCACTCTCAAGATAACGGAAGAACTATCACCTCC
AAGTGTCGAGCGATACTTCCGCAACATTGACAAGTGTAATGTAGAGACGA
GCTCCATCCTGCCTCTTAGGAAACTGGTGTTGTTCTTCGTGCTTGCCTTC
TCGTGCTGCGGTGCGTACATCCTTGCGATGATCCTGAAGAATATGCTTCG
GAGAGACAGGTCGGCAAAAAGACAAAGTGCCCCCAAGCTTGTGGAAGAGT
CTTTGAGCCGGGAGTACACGATTCTGAAGCTCGGCAATCTAGCGAGAAGT
TTATCATATCTCAGCGATGACCGAAGCGCGTTGGGAGACGTTTCCACGCA
ACAGAAGCGACGCGAGGTTCATGACTGGTTACTTTGA back to topprotein sequence of Gcaud8424.t1 >Gcaud8424.t1 ID=Gcaud8424.t1|Name=Gcaud8424.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=479bp
MHRTLWVLSAILSVSAAVEIANALTGTSLRCCVVHEPPIAFLDEKEYVNG
GISGVVAEYLREMQALLGWNCSEVTPYQYGSGTTAFNNFIDMMENCAVNG
TTRIDDQCQCDIGISGWLPTAGRYDRVDLLPPFAQDGFRVIFDISVSNTS
INSLFFLTTFDVASWACIFSIILLFTICKLLDHRFAPFVSQRHPQASDSY
LSRLFRGIQNKPLLYRFPRAFLSVFKAMITHMTASLVQEQITSEFRSVED
FRSCRIPPEVVCIPDGGAIDTYWNHSIAAGNECHKGRSPRRGSLADSYED
AIRGLCRYGILLDSTARLAVNGLYCGRFLLSDNLLTSGLSLVLPKGSNLT
RAMSIATLKITEELSPPSVERYFRNIDKCNVETSSILPLRKLVLFFVLAF
SCCGAYILAMILKNMLRRDRSAKRQSAPKLVEESLSREYTILKLGNLARS
LSYLSDDRSALGDVSTQQKRREVHDWLL* back to topmRNA from alignment at NODE_248_length_34309_cov_4.396809:2110..4006+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud8424.t1 ID=Gcaud8424.t1|Name=Gcaud8424.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1897bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:2110..4006+ (Gracilaria caudata M_176_S67 male)
ATGCATCGGACGCTTTGGGTGCTTAGTGCCATTCTATCCGTCTCCGCAGC
CGTCGAAATTGCCAATGCTTTGACCGGGACTTCGCTTCGCTGTTGCGTCG
TACACGAGCCTCCAATTGCCTTCCTCGATGAGAAGGAGTATGTCAACGTG
AGTTCCCCTATATCCACTGATCTTTTTATGCAGTGCGGCGTATACCGACC
TCATGCCATACTAACGAAGCATCCTCACTACTTTTGAGTATCTATCCAGG
GTGGAATCAGTGGCGTGGTTGCCGAGTACTTGAGAGAAATGCAGGCTCTT
CTCGGTTGGAACTGCTCAGAAGTGACGCCGTACCAGTATGGTAGCGGCAC
AACTGCCTTCAACAACTTCATTGACATGATGGAGAACTGCGCAGTCAATG
GTACTACCAGAATTGACGACCAATGCCAATGCGACATTGGCATTAGTGGT
TGGCTCCCCACTGCAGGTCGATACGACCGCGTTGACCTGTTGCCACCTTT
CGCTCAAGACGGGTTTCGGGTAATCTTCGATATATCGGTTTCCAACACAT
CTATCAACAGCCTGTTCTTCCTCACTACATTTGACGTGGCATCATGGGCT
TGCATTTTCTCTATAATCTTGCTTTTTACTATATGCAAACTTCTCGACCA
TCGCTTTGCACCGTTTGTATCACAACGGCACCCGCAAGCAAGTGACTCGT
ACCTTTCGCGTCTTTTCCGAGGTATTCAGAACAAGCCTCTGCTGTATCGG
TTTCCACGGGCCTTCTTGAGTGTGTGTAAGTTCTGAATACAGAGCCATGT
TTCGTCGCAAACCTGAGCCGATGAGCTGACGTACACCCATGTGAACCTTG
TTTTGCGACATGCAGTTAAGGCCAtgatcactcagtcggactcagatcaa
ggaaaacgaaactcgacacctcatcgttcaattctgaacctcgttgtagg
caTCTGCGGGCTTTTTCTGGTCTTGGCTTATGAAGCCAGTATGACGTACG
TTCTGGGCCTTCGATCAGAAAGTTTGAAGTGAAAGATATTGTCTGACATG
AGCGACTTGTGTGAATCGTTAACAGAGCCTCGCTTGTCCAAGAACAGATC
ACGTCGGAATTTCGATCAGTGGAGGACTTTAGGAGCTGCCGCATTCCACC
AGAAGTAGTGTGTATTCCTGACGGGGGAGCGATTGACACCTACTGGAATC
ATTCGATTGCGGCGGGCAAGTAAGTGCATCACGTCACACTGGCAAAGCGC
TGAGAATGCGAAGTAGCTAACGAGAGGCTTATTTTCACCGTTttgcgagc
agtgagtgtcacaagggaaggtcgccccgccgaggttcattagcggacag
ttacgAAGACGCGATAAGGGGCTTATGCCGATACGGAATCTTACTGGATT
CGACGGCGAGGTTAGCCGTTAACGGTCTCTATTGCGGGCGATTTCTACTG
AGCGACAATCTGCTAACCAGTGGATTATCTCTCGTGCTGCCCAAGGGATC
GAATTTGACACGCGCCATGAGCATCGCCACTCTCAAGATAACGGAAGAAC
TATCACCTCCAAGTGTCGAGCGATACTTCCGCAACATTGACAAGTGTAAT
GTAGAGACGAGCTCCATCCTGCCTCTTAGGAAACTGGTGTTGTTCTTCGT
GCTTGCCTTCTCGTGCTGCGGTGCGTACATCCTTGCGATGATCCTGAAGA
ATATGCTTCGGAGAGACAGGTCGGCAAAAAGACAAAGTGCCCCCAAGCTT
GTGGAAGAGTCTTTGAGCCGGGAGTACACGATTCTGAAGCTCGGCAATCT
AGCGAGAAGTTTATCATATCTCAGCGATGACCGAAGCGCGTTGGGAGACG
TTTCCACGCAACAGAAGCGACGCGAGGTTCATGACTGGTTACTTTGA back to topCoding sequence (CDS) from alignment at NODE_248_length_34309_cov_4.396809:2110..4006+ >Gcaud8424.t1 ID=Gcaud8424.t1|Name=Gcaud8424.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1437bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:2110..4006+ (Gracilaria caudata M_176_S67 male)
ATGCATCGGACGCTTTGGGTGCTTAGTGCCATTCTATCCGTCTCCGCAGC
CGTCGAAATTGCCAATGCTTTGACCGGGACTTCGCTTCGCTGTTGCGTCG
TACACGAGCCTCCAATTGCCTTCCTCGATGAGAAGGAGTATGTCAACGGT
GGAATCAGTGGCGTGGTTGCCGAGTACTTGAGAGAAATGCAGGCTCTTCT
CGGTTGGAACTGCTCAGAAGTGACGCCGTACCAGTATGGTAGCGGCACAA
CTGCCTTCAACAACTTCATTGACATGATGGAGAACTGCGCAGTCAATGGT
ACTACCAGAATTGACGACCAATGCCAATGCGACATTGGCATTAGTGGTTG
GCTCCCCACTGCAGGTCGATACGACCGCGTTGACCTGTTGCCACCTTTCG
CTCAAGACGGGTTTCGGGTAATCTTCGATATATCGGTTTCCAACACATCT
ATCAACAGCCTGTTCTTCCTCACTACATTTGACGTGGCATCATGGGCTTG
CATTTTCTCTATAATCTTGCTTTTTACTATATGCAAACTTCTCGACCATC
GCTTTGCACCGTTTGTATCACAACGGCACCCGCAAGCAAGTGACTCGTAC
CTTTCGCGTCTTTTCCGAGGTATTCAGAACAAGCCTCTGCTGTATCGGTT
TCCACGGGCCTTCTTGAGTGTGTTTAAGGCCAtgatcactcaTATGACAG
CCTCGCTTGTCCAAGAACAGATCACGTCGGAATTTCGATCAGTGGAGGAC
TTTAGGAGCTGCCGCATTCCACCAGAAGTAGTGTGTATTCCTGACGGGGG
AGCGATTGACACCTACTGGAATCATTCGATTGCGGCGGGCAAtgagtgtc
acaagggaaggtcgccccgccgaggttcattagcggacagttacgAAGAC
GCGATAAGGGGCTTATGCCGATACGGAATCTTACTGGATTCGACGGCGAG
GTTAGCCGTTAACGGTCTCTATTGCGGGCGATTTCTACTGAGCGACAATC
TGCTAACCAGTGGATTATCTCTCGTGCTGCCCAAGGGATCGAATTTGACA
CGCGCCATGAGCATCGCCACTCTCAAGATAACGGAAGAACTATCACCTCC
AAGTGTCGAGCGATACTTCCGCAACATTGACAAGTGTAATGTAGAGACGA
GCTCCATCCTGCCTCTTAGGAAACTGGTGTTGTTCTTCGTGCTTGCCTTC
TCGTGCTGCGGTGCGTACATCCTTGCGATGATCCTGAAGAATATGCTTCG
GAGAGACAGGTCGGCAAAAAGACAAAGTGCCCCCAAGCTTGTGGAAGAGT
CTTTGAGCCGGGAGTACACGATTCTGAAGCTCGGCAATCTAGCGAGAAGT
TTATCATATCTCAGCGATGACCGAAGCGCGTTGGGAGACGTTTCCACGCA
ACAGAAGCGACGCGAGGTTCATGACTGGTTACTTTGA back to top
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