Gcaud8410.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8410.t1
Unique NameGcaud8410.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length142
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1098_length_13905_cov_4.567830contigNODE_1098_length_13905_cov_4.567830:12328..12753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDP00313
PFAMsFKBP_C
Max annot lvl3041|Chlorophyta
KEGG koko:K09569
Evalue2.87e-39
EggNOG OGsCOG0545@1|root,KOG0549@2759|Eukaryota,380BU@33090|Viridiplantae,34MD5@3041|Chlorophyta
EC5.2.1.8
DescriptionFKBP-type peptidyl-prolyl cis-trans isomerase
COG categoryO
BRITEko00000,ko01000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8410Gcaud8410Gracilaria caudata M_176_S67 malegeneNODE_1098_length_13905_cov_4.567830 12328..12753 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8410.t1.stop1Gcaud8410.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1098_length_13905_cov_4.567830 12328..12330 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8410.t1.CDS1Gcaud8410.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1098_length_13905_cov_4.567830 12328..12753 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8410.t1.exon1Gcaud8410.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1098_length_13905_cov_4.567830 12328..12753 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8410.t1.start1Gcaud8410.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1098_length_13905_cov_4.567830 12751..12753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8410.t1Gcaud8410.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1098_length_13905_cov_4.567830 12328..12753 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8410.t1 ID=Gcaud8410.t1|Name=Gcaud8410.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=142bp
MSRRTKTAAFLAIVALALFAGPASAAELEIETVKTGDCSRAAKKGDRLLM
HYEGTLEDGSEFDSSYKRGEPFAFVLGQGMVIKGWDEGLEGICKGEVRNL
VIPPHKGYGDRGFPPVIPEKATLKFKVELVDFGPDDDDREL*
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spliced messenger RNA

>Gcaud8410.t1 ID=Gcaud8410.t1|Name=Gcaud8410.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=426bp|location=Sequence derived from alignment at NODE_1098_length_13905_cov_4.567830:12328..12753- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGCCGAACGAAAACCGCCGCCTTTCTAGCCATCGTCGCCCTCGC
CCTATTCGCCGGCCCCGCGTCTGCGGCCGAACTTGAAATTGAAACCGTAA
AAACTGGCGATTGCAGTCGAGCAGCGAAGAAAGGCGATCGTTTACTGATG
CACTACGAGGGAACCTTGGAGGACGGTAGTGAATTCGATAGCTCCTACAA
GCGCGGAGAGCCATTTGCCTTTGTTTTGGGACAGGGCATGGTGATCAAAG
GATGGGATGAAGGGTTGGAAGGTATTTGCAAGGGAGAAGTTCGCAATTTG
GTCATTCCGCCGCACAAAGGATACGGCGATCGTGGGTTTCCGCCGGTCAT
TCCTGAGAAGGCTACGTTGAAATTCAAGGTGGAACTGGTTGATTTTGGCC
CCGACGACGACGACCGAGAGCTATAA
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protein sequence of Gcaud8410.t1

>Gcaud8410.t1 ID=Gcaud8410.t1|Name=Gcaud8410.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=142bp
MSRRTKTAAFLAIVALALFAGPASAAELEIETVKTGDCSRAAKKGDRLLM
HYEGTLEDGSEFDSSYKRGEPFAFVLGQGMVIKGWDEGLEGICKGEVRNL
VIPPHKGYGDRGFPPVIPEKATLKFKVELVDFGPDDDDREL*
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mRNA from alignment at NODE_1098_length_13905_cov_4.567830:12328..12753-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8410.t1 ID=Gcaud8410.t1|Name=Gcaud8410.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=426bp|location=Sequence derived from alignment at NODE_1098_length_13905_cov_4.567830:12328..12753- (Gracilaria caudata M_176_S67 male)
ATGTCTCGCCGAACGAAAACCGCCGCCTTTCTAGCCATCGTCGCCCTCGC
CCTATTCGCCGGCCCCGCGTCTGCGGCCGAACTTGAAATTGAAACCGTAA
AAACTGGCGATTGCAGTCGAGCAGCGAAGAAAGGCGATCGTTTACTGATG
CACTACGAGGGAACCTTGGAGGACGGTAGTGAATTCGATAGCTCCTACAA
GCGCGGAGAGCCATTTGCCTTTGTTTTGGGACAGGGCATGGTGATCAAAG
GATGGGATGAAGGGTTGGAAGGTATTTGCAAGGGAGAAGTTCGCAATTTG
GTCATTCCGCCGCACAAAGGATACGGCGATCGTGGGTTTCCGCCGGTCAT
TCCTGAGAAGGCTACGTTGAAATTCAAGGTGGAACTGGTTGATTTTGGCC
CCGACGACGACGACCGAGAGCTATAA
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Coding sequence (CDS) from alignment at NODE_1098_length_13905_cov_4.567830:12328..12753-

>Gcaud8410.t1 ID=Gcaud8410.t1|Name=Gcaud8410.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=426bp|location=Sequence derived from alignment at NODE_1098_length_13905_cov_4.567830:12328..12753- (Gracilaria caudata M_176_S67 male)
ATGTCTCGCCGAACGAAAACCGCCGCCTTTCTAGCCATCGTCGCCCTCGC
CCTATTCGCCGGCCCCGCGTCTGCGGCCGAACTTGAAATTGAAACCGTAA
AAACTGGCGATTGCAGTCGAGCAGCGAAGAAAGGCGATCGTTTACTGATG
CACTACGAGGGAACCTTGGAGGACGGTAGTGAATTCGATAGCTCCTACAA
GCGCGGAGAGCCATTTGCCTTTGTTTTGGGACAGGGCATGGTGATCAAAG
GATGGGATGAAGGGTTGGAAGGTATTTGCAAGGGAGAAGTTCGCAATTTG
GTCATTCCGCCGCACAAAGGATACGGCGATCGTGGGTTTCCGCCGGTCAT
TCCTGAGAAGGCTACGTTGAAATTCAAGGTGGAACTGGTTGATTTTGGCC
CCGACGACGACGACCGAGAGCTATAA
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