Gcaud841.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud841.t1
Unique NameGcaud841.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length306
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_490_length_23884_cov_4.522254contigNODE_490_length_23884_cov_4.522254:22775..23692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog77586.LPERR12G15070.1
PFAMsPhos_pyr_kin
Max annot lvl35493|Streptophyta
KEGG rclassRC00002,RC00017
KEGG koko:K00868
KEGG ReactionR00174,R01909,R02493
KEGG Pathwayko00750,ko01100,map00750,map01100
Evalue5.37e-75
EggNOG OGsCOG2240@1|root,KOG2599@2759|Eukaryota,37NXM@33090|Viridiplantae,3GFRA@35493|Streptophyta,3KQ1S@4447|Liliopsida,3I2AX@38820|Poales
EC2.7.1.35
DescriptionPhosphomethylpyrimidine kinase
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud841Gcaud841Gracilaria caudata M_176_S67 malegeneNODE_490_length_23884_cov_4.522254 22775..23692 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud841.t1.stop1Gcaud841.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_490_length_23884_cov_4.522254 22775..22777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud841.t1.CDS1Gcaud841.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_490_length_23884_cov_4.522254 22775..23692 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud841.t1.exon1Gcaud841.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_490_length_23884_cov_4.522254 22775..23692 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud841.t1.start1Gcaud841.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_490_length_23884_cov_4.522254 23690..23692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud841.t1Gcaud841.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_490_length_23884_cov_4.522254 22775..23692 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud841.t1 ID=Gcaud841.t1|Name=Gcaud841.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=306bp
MAAVARRVLSVQSHVTSGYVGNRAAAFPLQLLGYDVDILNSCQLSNHTGY
AHGARGMRLDAADLRTVLHALRDNDLLSCTSHLLTGFIGTPGCLLAVADA
VQLLRRAAAPPLVYVCDPVLGDNGKLYVPEQLVDIYKESILQFATVLTPN
AFELSLLTNSTVSSEQDTFVACNYLHERYGIPTVVVTGTMFERRSGTMSV
LVSRQTAHAHMRFAVDTPYIEGNFTGTGDLMTALLLAWGDRFPDDPVRAC
CSATASVSAVLANTVKLPKRRGRCPFPELRLVQSQQHILDPPLSLVSVRH
ISMPH*
back to top

spliced messenger RNA

>Gcaud841.t1 ID=Gcaud841.t1|Name=Gcaud841.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=918bp|location=Sequence derived from alignment at NODE_490_length_23884_cov_4.522254:22775..23692- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCCGTCGCCCGCCGCGTGCTGTCCGTGCAGAGCCACGTCACGTC
CGGCTACGTGGGCAATCGCGCGGCCGCGTTCCCGCTGCAGCTGCTCGGCT
ACGACGTGGACATCCTCAACTCGTGCCAGCTCTCCAACCACACCGGCTAC
GCGCACGGCGCGCGCGGCATGCGCCTGGACGCGGCCGACCTGCGCACCGT
GCTGCACGCGCTGCGCGACAACGATCTGCTCTCGTGCACCTCGCACCTGC
TTACCGGTTTTATCGGCACGCCCGGCTGCCTGCTGGCGGTGGCCGACGCC
GTGCAACTGCTGCGCCGCGCCGCGGCGCCGCCGCTGGTGTATGTGTGCGA
CCCGGTGCTGGGCGATAACGGCAAGCTGTACGTGCCGGAGCAGCTTGTCG
ATATCTACAAGGAGTCCATCCTGCAGTTCGCCACCGTTCTCACGCCCAAC
GCGTTCGAGCTGTCGCTGCTCACCAACAGCACCGTCAGCAGCGAGCAGGA
CACGTTTGTGGCGTGCAACTACCTGCACGAGCGCTACGGCATACCCACCG
TGGTGGTCACCGGCACCATGTTTGAGCGCCGCTCCGGCACCATGTCGGTG
CTGGTGTCGCGCCAGACCGCGCACGCGCACATGCGCTTTGCCGTGGACAC
GCCGTACATTGAGGGCAACTTCACGGGCACGGGCGACCTCATGACTGCTT
TATTGTTAGCGTGGGGCGACAGGTTTCCCGACGACCCCGTGCGCGCGTGC
TGCAGCGCCACCGCGTCCGTGTCGGCGGTGTTGGCCAACACGGTCAAGTT
GCCGAAGAGACGCGGGCGCTGTCCGTTCCCGGAGCTGCGTCTCGTTCAAA
GCCAGCAGCACATTCTCGATCCGCCTCTGAGCTTGGTGTCTGTGCGCCAC
ATATCCATGCCGCATTGA
back to top

protein sequence of Gcaud841.t1

>Gcaud841.t1 ID=Gcaud841.t1|Name=Gcaud841.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=306bp
MAAVARRVLSVQSHVTSGYVGNRAAAFPLQLLGYDVDILNSCQLSNHTGY
AHGARGMRLDAADLRTVLHALRDNDLLSCTSHLLTGFIGTPGCLLAVADA
VQLLRRAAAPPLVYVCDPVLGDNGKLYVPEQLVDIYKESILQFATVLTPN
AFELSLLTNSTVSSEQDTFVACNYLHERYGIPTVVVTGTMFERRSGTMSV
LVSRQTAHAHMRFAVDTPYIEGNFTGTGDLMTALLLAWGDRFPDDPVRAC
CSATASVSAVLANTVKLPKRRGRCPFPELRLVQSQQHILDPPLSLVSVRH
ISMPH*
back to top

mRNA from alignment at NODE_490_length_23884_cov_4.522254:22775..23692-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud841.t1 ID=Gcaud841.t1|Name=Gcaud841.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=918bp|location=Sequence derived from alignment at NODE_490_length_23884_cov_4.522254:22775..23692- (Gracilaria caudata M_176_S67 male)
ATGGCGGCCGTCGCCCGCCGCGTGCTGTCCGTGCAGAGCCACGTCACGTC
CGGCTACGTGGGCAATCGCGCGGCCGCGTTCCCGCTGCAGCTGCTCGGCT
ACGACGTGGACATCCTCAACTCGTGCCAGCTCTCCAACCACACCGGCTAC
GCGCACGGCGCGCGCGGCATGCGCCTGGACGCGGCCGACCTGCGCACCGT
GCTGCACGCGCTGCGCGACAACGATCTGCTCTCGTGCACCTCGCACCTGC
TTACCGGTTTTATCGGCACGCCCGGCTGCCTGCTGGCGGTGGCCGACGCC
GTGCAACTGCTGCGCCGCGCCGCGGCGCCGCCGCTGGTGTATGTGTGCGA
CCCGGTGCTGGGCGATAACGGCAAGCTGTACGTGCCGGAGCAGCTTGTCG
ATATCTACAAGGAGTCCATCCTGCAGTTCGCCACCGTTCTCACGCCCAAC
GCGTTCGAGCTGTCGCTGCTCACCAACAGCACCGTCAGCAGCGAGCAGGA
CACGTTTGTGGCGTGCAACTACCTGCACGAGCGCTACGGCATACCCACCG
TGGTGGTCACCGGCACCATGTTTGAGCGCCGCTCCGGCACCATGTCGGTG
CTGGTGTCGCGCCAGACCGCGCACGCGCACATGCGCTTTGCCGTGGACAC
GCCGTACATTGAGGGCAACTTCACGGGCACGGGCGACCTCATGACTGCTT
TATTGTTAGCGTGGGGCGACAGGTTTCCCGACGACCCCGTGCGCGCGTGC
TGCAGCGCCACCGCGTCCGTGTCGGCGGTGTTGGCCAACACGGTCAAGTT
GCCGAAGAGACGCGGGCGCTGTCCGTTCCCGGAGCTGCGTCTCGTTCAAA
GCCAGCAGCACATTCTCGATCCGCCTCTGAGCTTGGTGTCTGTGCGCCAC
ATATCCATGCCGCATTGA
back to top

Coding sequence (CDS) from alignment at NODE_490_length_23884_cov_4.522254:22775..23692-

>Gcaud841.t1 ID=Gcaud841.t1|Name=Gcaud841.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=918bp|location=Sequence derived from alignment at NODE_490_length_23884_cov_4.522254:22775..23692- (Gracilaria caudata M_176_S67 male)
ATGGCGGCCGTCGCCCGCCGCGTGCTGTCCGTGCAGAGCCACGTCACGTC
CGGCTACGTGGGCAATCGCGCGGCCGCGTTCCCGCTGCAGCTGCTCGGCT
ACGACGTGGACATCCTCAACTCGTGCCAGCTCTCCAACCACACCGGCTAC
GCGCACGGCGCGCGCGGCATGCGCCTGGACGCGGCCGACCTGCGCACCGT
GCTGCACGCGCTGCGCGACAACGATCTGCTCTCGTGCACCTCGCACCTGC
TTACCGGTTTTATCGGCACGCCCGGCTGCCTGCTGGCGGTGGCCGACGCC
GTGCAACTGCTGCGCCGCGCCGCGGCGCCGCCGCTGGTGTATGTGTGCGA
CCCGGTGCTGGGCGATAACGGCAAGCTGTACGTGCCGGAGCAGCTTGTCG
ATATCTACAAGGAGTCCATCCTGCAGTTCGCCACCGTTCTCACGCCCAAC
GCGTTCGAGCTGTCGCTGCTCACCAACAGCACCGTCAGCAGCGAGCAGGA
CACGTTTGTGGCGTGCAACTACCTGCACGAGCGCTACGGCATACCCACCG
TGGTGGTCACCGGCACCATGTTTGAGCGCCGCTCCGGCACCATGTCGGTG
CTGGTGTCGCGCCAGACCGCGCACGCGCACATGCGCTTTGCCGTGGACAC
GCCGTACATTGAGGGCAACTTCACGGGCACGGGCGACCTCATGACTGCTT
TATTGTTAGCGTGGGGCGACAGGTTTCCCGACGACCCCGTGCGCGCGTGC
TGCAGCGCCACCGCGTCCGTGTCGGCGGTGTTGGCCAACACGGTCAAGTT
GCCGAAGAGACGCGGGCGCTGTCCGTTCCCGGAGCTGCGTCTCGTTCAAA
GCCAGCAGCACATTCTCGATCCGCCTCTGAGCTTGGTGTCTGTGCGCCAC
ATATCCATGCCGCATTGA
back to top