Gcaud8408.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8408.t1
Unique Name	Gcaud8408.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	367

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1098_length_13905_cov_4.567830	contig	NODE_1098_length_13905_cov_4.567830:8466..9566 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8408	Gcaud8408	Gracilaria caudata M_176_S67 male	gene	NODE_1098_length_13905_cov_4.567830 8466..9566 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8408.t1.start1	Gcaud8408.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1098_length_13905_cov_4.567830 8466..8468 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8408.t1.CDS1	Gcaud8408.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1098_length_13905_cov_4.567830 8466..9566 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8408.t1.exon1	Gcaud8408.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1098_length_13905_cov_4.567830 8466..9566 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8408.t1.stop1	Gcaud8408.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1098_length_13905_cov_4.567830 9564..9566 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8408.t1	Gcaud8408.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1098_length_13905_cov_4.567830 8466..9566 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1098_length_13905_cov_4.567830:8466..9566+
coding sequence from alignment at NODE_1098_length_13905_cov_4.567830:8466..9566+

mRNA sequence

>Gcaud8408.t1 ID=Gcaud8408.t1|Name=Gcaud8408.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=367bp
MANTNAAQENERSDRAAKRVKKTSSTTKTTTGTYIESSPSSSAGERIERV
GKKRQREVNNDGPLDSRKTKRLMSGSSAILKTAVPSTPKTVAASPRKRAV
KAPKSSVRKQGVKKEKRDRSTSRNKEEDEGSDEEDENEDVVDVSSEEDED
EINKDDEDEDEDDMEDYEEDCGNRKRKGEKCSEEVKKKKDEKDTKIENMQ
DELDELKDRLQKEIYRAAELEEALGLDIKAQVASAAEVQSMKSRIADLEK
QVKGLQSVIDQNEDQVREKDAALRGLIAQVKDLEARQCQNCGDKDDGEGA
REKEGKESKIDAAQAECKEEMEELKRYAEEVSGRMKQVLQVNRRLQQKML
RLRRGDVDVKEAHDSV*

spliced messenger RNA

>Gcaud8408.t1 ID=Gcaud8408.t1|Name=Gcaud8408.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at NODE_1098_length_13905_cov_4.567830:8466..9566+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAACACTAATGCGGCACAGGAAAACGAAAGGTCTGATCGCGCTGC
GAAGCGAGTGAAGAAAACAAGTAGTACGACGAAGACGACTACTGGAACAT
ACATCGAATCATCACCGTCATCTAGCGCAGGCGAGAGAATTGAGCGAGTT
GGAAAGAAACGACAGAGGGAAGTGAACAACGACGGACCTCTCGACTCGCG
CAAGACGAAGCGATTGATGAGTGGAAGCAGTGCCATTCTTAAGACAGCGG
TACCCTCAACACCTAAGACAGTTGCCGCTTCGCCTCGTAAGAGAGCGGTG
AAAGCGCCCAAAAGTTCGGTGCGCAAACAAGGTGTAAAAAAAGAAAAGCG
AGATAGATCTACGTCAAGAAACAAAGAGGAGGACGAGGGCAGtgatgaag
aggatgagaatgaagatgtagtggatgtaagtagcgaagaggacgaggac
gaaatcaacaaagacgacgaggacgaagacgaggatgacatggaagacta
cgaagaggatTGCGGCAATCGTAAAAGGAAAGGTGAGAAGTGTTCGGAGG
AAGTGAAGAAAAAGAAGGACGAGAAGGATACGAAGATTGAAAACATGCAA
GACGAGCTTGACGAGTTGAAAGACCGGTTGCAAAAGGAAATCTACCGAGC
AGCGGAGTTGGAAGAGGCATTGGGCCTGGATATCAAAGCACAGGTAGCAA
GTGCGGCGGAAGTGCAAAGCATGAAGAGCCGCATCGCAGATCTCGAAAAG
CAGGTGAAAGGTTTGCAGTCGGTGATAGATCAAAACGAGGATCAGGTTCG
CGAGAAGGATGCTGCGTTGAGAGGACTGATAGCGCAGGTTAAAGATTTGG
AAGCAAGGCAGTGTCAAAACTGCGGCGACAAGGACGATGGTGAAGGCGCT
CGAGAGAAGGAAGGAAAGGAGTCGAAGATCGACGCTGCTCAAGCGGAGTG
TAAGGAAGAAATGGAAGAATTGAAACGATACGCTGAGGAAGTGAGCGGTA
GAATGAAACAGGTTCTACAGGTGAACCGGCGCTTGCAACAGAAGATGCTG
CGACTGCGTCGAGGAGATGTGGACGTCAAGGAAGCGCACGACTCGGTGTG
A

protein sequence of Gcaud8408.t1

>Gcaud8408.t1 ID=Gcaud8408.t1|Name=Gcaud8408.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=367bp
MANTNAAQENERSDRAAKRVKKTSSTTKTTTGTYIESSPSSSAGERIERV
GKKRQREVNNDGPLDSRKTKRLMSGSSAILKTAVPSTPKTVAASPRKRAV
KAPKSSVRKQGVKKEKRDRSTSRNKEEDEGSDEEDENEDVVDVSSEEDED
EINKDDEDEDEDDMEDYEEDCGNRKRKGEKCSEEVKKKKDEKDTKIENMQ
DELDELKDRLQKEIYRAAELEEALGLDIKAQVASAAEVQSMKSRIADLEK
QVKGLQSVIDQNEDQVREKDAALRGLIAQVKDLEARQCQNCGDKDDGEGA
REKEGKESKIDAAQAECKEEMEELKRYAEEVSGRMKQVLQVNRRLQQKML
RLRRGDVDVKEAHDSV*

mRNA from alignment at NODE_1098_length_13905_cov_4.567830:8466..9566+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8408.t1 ID=Gcaud8408.t1|Name=Gcaud8408.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at NODE_1098_length_13905_cov_4.567830:8466..9566+ (Gracilaria caudata M_176_S67 male)
ATGGCAAACACTAATGCGGCACAGGAAAACGAAAGGTCTGATCGCGCTGC
GAAGCGAGTGAAGAAAACAAGTAGTACGACGAAGACGACTACTGGAACAT
ACATCGAATCATCACCGTCATCTAGCGCAGGCGAGAGAATTGAGCGAGTT
GGAAAGAAACGACAGAGGGAAGTGAACAACGACGGACCTCTCGACTCGCG
CAAGACGAAGCGATTGATGAGTGGAAGCAGTGCCATTCTTAAGACAGCGG
TACCCTCAACACCTAAGACAGTTGCCGCTTCGCCTCGTAAGAGAGCGGTG
AAAGCGCCCAAAAGTTCGGTGCGCAAACAAGGTGTAAAAAAAGAAAAGCG
AGATAGATCTACGTCAAGAAACAAAGAGGAGGACGAGGGCAGtgatgaag
aggatgagaatgaagatgtagtggatgtaagtagcgaagaggacgaggac
gaaatcaacaaagacgacgaggacgaagacgaggatgacatggaagacta
cgaagaggatTGCGGCAATCGTAAAAGGAAAGGTGAGAAGTGTTCGGAGG
AAGTGAAGAAAAAGAAGGACGAGAAGGATACGAAGATTGAAAACATGCAA
GACGAGCTTGACGAGTTGAAAGACCGGTTGCAAAAGGAAATCTACCGAGC
AGCGGAGTTGGAAGAGGCATTGGGCCTGGATATCAAAGCACAGGTAGCAA
GTGCGGCGGAAGTGCAAAGCATGAAGAGCCGCATCGCAGATCTCGAAAAG
CAGGTGAAAGGTTTGCAGTCGGTGATAGATCAAAACGAGGATCAGGTTCG
CGAGAAGGATGCTGCGTTGAGAGGACTGATAGCGCAGGTTAAAGATTTGG
AAGCAAGGCAGTGTCAAAACTGCGGCGACAAGGACGATGGTGAAGGCGCT
CGAGAGAAGGAAGGAAAGGAGTCGAAGATCGACGCTGCTCAAGCGGAGTG
TAAGGAAGAAATGGAAGAATTGAAACGATACGCTGAGGAAGTGAGCGGTA
GAATGAAACAGGTTCTACAGGTGAACCGGCGCTTGCAACAGAAGATGCTG
CGACTGCGTCGAGGAGATGTGGACGTCAAGGAAGCGCACGACTCGGTGTG
A

Coding sequence (CDS) from alignment at NODE_1098_length_13905_cov_4.567830:8466..9566+

>Gcaud8408.t1 ID=Gcaud8408.t1|Name=Gcaud8408.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1101bp|location=Sequence derived from alignment at NODE_1098_length_13905_cov_4.567830:8466..9566+ (Gracilaria caudata M_176_S67 male)
ATGGCAAACACTAATGCGGCACAGGAAAACGAAAGGTCTGATCGCGCTGC
GAAGCGAGTGAAGAAAACAAGTAGTACGACGAAGACGACTACTGGAACAT
ACATCGAATCATCACCGTCATCTAGCGCAGGCGAGAGAATTGAGCGAGTT
GGAAAGAAACGACAGAGGGAAGTGAACAACGACGGACCTCTCGACTCGCG
CAAGACGAAGCGATTGATGAGTGGAAGCAGTGCCATTCTTAAGACAGCGG
TACCCTCAACACCTAAGACAGTTGCCGCTTCGCCTCGTAAGAGAGCGGTG
AAAGCGCCCAAAAGTTCGGTGCGCAAACAAGGTGTAAAAAAAGAAAAGCG
AGATAGATCTACGTCAAGAAACAAAGAGGAGGACGAGGGCAGtgatgaag
aggatgagaatgaagatgtagtggatgtaagtagcgaagaggacgaggac
gaaatcaacaaagacgacgaggacgaagacgaggatgacatggaagacta
cgaagaggatTGCGGCAATCGTAAAAGGAAAGGTGAGAAGTGTTCGGAGG
AAGTGAAGAAAAAGAAGGACGAGAAGGATACGAAGATTGAAAACATGCAA
GACGAGCTTGACGAGTTGAAAGACCGGTTGCAAAAGGAAATCTACCGAGC
AGCGGAGTTGGAAGAGGCATTGGGCCTGGATATCAAAGCACAGGTAGCAA
GTGCGGCGGAAGTGCAAAGCATGAAGAGCCGCATCGCAGATCTCGAAAAG
CAGGTGAAAGGTTTGCAGTCGGTGATAGATCAAAACGAGGATCAGGTTCG
CGAGAAGGATGCTGCGTTGAGAGGACTGATAGCGCAGGTTAAAGATTTGG
AAGCAAGGCAGTGTCAAAACTGCGGCGACAAGGACGATGGTGAAGGCGCT
CGAGAGAAGGAAGGAAAGGAGTCGAAGATCGACGCTGCTCAAGCGGAGTG
TAAGGAAGAAATGGAAGAATTGAAACGATACGCTGAGGAAGTGAGCGGTA
GAATGAAACAGGTTCTACAGGTGAACCGGCGCTTGCAACAGAAGATGCTG
CGACTGCGTCGAGGAGATGTGGACGTCAAGGAAGCGCACGACTCGGTGTG
A