Gcaud8405.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8405.t1
Unique Name	Gcaud8405.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	356

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1098_length_13905_cov_4.567830	contig	NODE_1098_length_13905_cov_4.567830:3672..4985 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8405	Gcaud8405	Gracilaria caudata M_176_S67 male	gene	NODE_1098_length_13905_cov_4.567830 3672..4985 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8405.t1	Gcaud8405.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1098_length_13905_cov_4.567830 3672..4985 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8405.t1.stop1	Gcaud8405.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1098_length_13905_cov_4.567830 3672..3674 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8405.t1.CDS1	Gcaud8405.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1098_length_13905_cov_4.567830 3672..3788 -
Gcaud8405.t1.CDS2	Gcaud8405.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1098_length_13905_cov_4.567830 3971..4057 -
Gcaud8405.t1.CDS3	Gcaud8405.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_1098_length_13905_cov_4.567830 4122..4985 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8405.t1.exon1	Gcaud8405.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1098_length_13905_cov_4.567830 3672..3788 -
Gcaud8405.t1.exon2	Gcaud8405.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1098_length_13905_cov_4.567830 3971..4057 -
Gcaud8405.t1.exon3	Gcaud8405.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_1098_length_13905_cov_4.567830 4122..4985 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8405.t1.intron1	Gcaud8405.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1098_length_13905_cov_4.567830 3789..3970 -
Gcaud8405.t1.intron2	Gcaud8405.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_1098_length_13905_cov_4.567830 4058..4121 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8405.t1.start1	Gcaud8405.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1098_length_13905_cov_4.567830 4983..4985 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1098_length_13905_cov_4.567830:3672..4985-
coding sequence from alignment at NODE_1098_length_13905_cov_4.567830:3672..4985-

mRNA sequence

>Gcaud8405.t1 ID=Gcaud8405.t1|Name=Gcaud8405.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=356bp
MTSPPRHARATPQPRRILRPAVAPPPVITPRRLPVSRAVSDRACVRSAPR
RLACARVDALLNEETSDKQEVRACFEEAGCGELEDERAMRSPVDQISCTP
SRADNDEWLAQFGIDISLLRIYDSEEEGERVQPVDENQHPNITPSRRTSA
PESPATFELSIKSEPFQLHSAFPSPAATAAYLPARLPHSPQQQVVNTDPI
TPRRLHSSGSRRHSVKISHRELISLTDAPPSVQPAAHPQKLNPPQPKQPS
PTELSAANTSTGSNVFLTPVRASRKQRLQLGADTIVTPLVLECWNNLVSV
TLLIILFNDHVTHLQRYKGYPTCTETSLVSSSLRLPSSPESCVRRILSLS
FGRSF*

spliced messenger RNA

>Gcaud8405.t1 ID=Gcaud8405.t1|Name=Gcaud8405.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at NODE_1098_length_13905_cov_4.567830:3672..4985- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAGCCCTCCCCGCCACGCCCGCGCCACGCCGCAGCCTCGTCGCAT
CTTACGTCCCGCCGTCGCGCCGCCGCCCGTTATCACGCCGCGTCGGCTCC
CCGTGTCGCGCGCCGTCTCCGACCGAGCATGCGTCCGTTCCGCGCCCCGT
CGTCTGGCTTGCGCGCGCGTTGACGCGCTTTTGAACGAGGAGACATCGGA
CAAGCAGGAGGTGCGCGCTTGTTTTGAGGAGGCCGGGTGTGGTGAATTAG
AGGACGAACGAGCTATGCGTTCTCCCGTGGACCAGATTTCGTGCACGCCG
TCGCGGGCGGATAATGATGAGTGGTTAGCGCAGTTTGGCATTGATATTTC
TTTGCTTCGTATTTATGACAGTGAGGAAGAAGGAGAACGAGTTCAACCCG
TTGATGAGAATCAACATCCTAATATCACTCCCTCTCGGCGAACAAGCGCT
CCCGAATCACCTGCTACATTCGAGCTATCCATCAAGTCAGAACCGTTCCA
ACTACATTCCGCGTTTCCATCTCCCGCCGCAACAGCCGCTTATCTTCCGG
CGCGCCTTCCGCACTCACCGCAACAACAGGTCGTCAACACTGATCCAATC
ACGCCGCGTCGTCTCCATTCCTCCGGCTCGCGCCGTCACAGCGTCAAGAT
ATCTCACCGAGAACTGATATCTCTTACAGACGCTCCTCCTTCAGTTCAAC
CCGCCGCACACCCTCAAAAGCTCAACCCACCACAGCCAAAGCAACCTTCA
CCTACAGAATTGAGCGCGGCGAATACAAGCACTGGTTCGAACGTGTTTCT
TACTCCTGTTCGGGCCTCAAGGAAACAACGTCTCCAGCTTGGTGCCGATA
CGATTGTCACTCCGCTCGTGCTCGAATGTTGGAACAATTTGGTTTCAGTT
ACACTCCTAATCATTCTCTTCAATGATCACGTCACGCATCTGCAACGTTA
TAAGGGGTATCCCACATGTACAGAAACATCGTTAGTTTCGTCTTCTCTGC
GCTTACCTTCTTCACCGGAGAGCTGTGTGAGGAGAATACTATCACTGAGT
TTTGGTCGATCATTTTGA

protein sequence of Gcaud8405.t1

>Gcaud8405.t1 ID=Gcaud8405.t1|Name=Gcaud8405.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=356bp
MTSPPRHARATPQPRRILRPAVAPPPVITPRRLPVSRAVSDRACVRSAPR
RLACARVDALLNEETSDKQEVRACFEEAGCGELEDERAMRSPVDQISCTP
SRADNDEWLAQFGIDISLLRIYDSEEEGERVQPVDENQHPNITPSRRTSA
PESPATFELSIKSEPFQLHSAFPSPAATAAYLPARLPHSPQQQVVNTDPI
TPRRLHSSGSRRHSVKISHRELISLTDAPPSVQPAAHPQKLNPPQPKQPS
PTELSAANTSTGSNVFLTPVRASRKQRLQLGADTIVTPLVLECWNNLVSV
TLLIILFNDHVTHLQRYKGYPTCTETSLVSSSLRLPSSPESCVRRILSLS
FGRSF*

mRNA from alignment at NODE_1098_length_13905_cov_4.567830:3672..4985-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8405.t1 ID=Gcaud8405.t1|Name=Gcaud8405.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1314bp|location=Sequence derived from alignment at NODE_1098_length_13905_cov_4.567830:3672..4985- (Gracilaria caudata M_176_S67 male)
ATGACCAGCCCTCCCCGCCACGCCCGCGCCACGCCGCAGCCTCGTCGCAT
CTTACGTCCCGCCGTCGCGCCGCCGCCCGTTATCACGCCGCGTCGGCTCC
CCGTGTCGCGCGCCGTCTCCGACCGAGCATGCGTCCGTTCCGCGCCCCGT
CGTCTGGCTTGCGCGCGCGTTGACGCGCTTTTGAACGAGGAGACATCGGA
CAAGCAGGAGGTGCGCGCTTGTTTTGAGGAGGCCGGGTGTGGTGAATTAG
AGGACGAACGAGCTATGCGTTCTCCCGTGGACCAGATTTCGTGCACGCCG
TCGCGGGCGGATAATGATGAGTGGTTAGCGCAGTTTGGCATTGATATTTC
TTTGCTTCGTATTTATGACAGTGAGGAAGAAGGAGAACGAGTTCAACCCG
TTGATGAGAATCAACATCCTAATATCACTCCCTCTCGGCGAACAAGCGCT
CCCGAATCACCTGCTACATTCGAGCTATCCATCAAGTCAGAACCGTTCCA
ACTACATTCCGCGTTTCCATCTCCCGCCGCAACAGCCGCTTATCTTCCGG
CGCGCCTTCCGCACTCACCGCAACAACAGGTCGTCAACACTGATCCAATC
ACGCCGCGTCGTCTCCATTCCTCCGGCTCGCGCCGTCACAGCGTCAAGAT
ATCTCACCGAGAACTGATATCTCTTACAGACGCTCCTCCTTCAGTTCAAC
CCGCCGCACACCCTCAAAAGCTCAACCCACCACAGCCAAAGCAACCTTCA
CCTACAGAATTGAGCGCGGCGAATACAAGCACTGGTTCGAACGTGTTTCT
TACTCCTGTTCGGGCCTCAAGGAAACAACGTCTCCAGCTTGGTGCCGATA
CGATTGTCACTCCGGTGCGAAGATCACTCAGACTTAAAAACAATCAACAC
AATCTTGCCCCTATTGACCAACCACAAGCTCGTGCTCGAATGTTGGAACA
ATTTGGTTTCAGTTACACTCCTAATCATTCTCTTCAATGATCACGTCACG
CATCTGCAACGTTATGTATGTCCCCATTCGTTCTTCTGCAGCACATTATC
ATGCGTGGAGCAATTGATTGTCAATTAATGGAGCCGTCTGTGAAAGCGCT
TCTTCTTGGGGCGTATTGTTCGATAAACTTTTCGTATTCCCCAGTATTTC
GTTTTGGGTTGCTCGCCTCTGACCATTGAATTATCTCTTTTACGCAGAAG
GGGTATCCCACATGTACAGAAACATCGTTAGTTTCGTCTTCTCTGCGCTT
ACCTTCTTCACCGGAGAGCTGTGTGAGGAGAATACTATCACTGAGTTTTG
GTCGATCATTTTGA

Coding sequence (CDS) from alignment at NODE_1098_length_13905_cov_4.567830:3672..4985-

>Gcaud8405.t1 ID=Gcaud8405.t1|Name=Gcaud8405.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1068bp|location=Sequence derived from alignment at NODE_1098_length_13905_cov_4.567830:3672..4985- (Gracilaria caudata M_176_S67 male)
ATGACCAGCCCTCCCCGCCACGCCCGCGCCACGCCGCAGCCTCGTCGCAT
CTTACGTCCCGCCGTCGCGCCGCCGCCCGTTATCACGCCGCGTCGGCTCC
CCGTGTCGCGCGCCGTCTCCGACCGAGCATGCGTCCGTTCCGCGCCCCGT
CGTCTGGCTTGCGCGCGCGTTGACGCGCTTTTGAACGAGGAGACATCGGA
CAAGCAGGAGGTGCGCGCTTGTTTTGAGGAGGCCGGGTGTGGTGAATTAG
AGGACGAACGAGCTATGCGTTCTCCCGTGGACCAGATTTCGTGCACGCCG
TCGCGGGCGGATAATGATGAGTGGTTAGCGCAGTTTGGCATTGATATTTC
TTTGCTTCGTATTTATGACAGTGAGGAAGAAGGAGAACGAGTTCAACCCG
TTGATGAGAATCAACATCCTAATATCACTCCCTCTCGGCGAACAAGCGCT
CCCGAATCACCTGCTACATTCGAGCTATCCATCAAGTCAGAACCGTTCCA
ACTACATTCCGCGTTTCCATCTCCCGCCGCAACAGCCGCTTATCTTCCGG
CGCGCCTTCCGCACTCACCGCAACAACAGGTCGTCAACACTGATCCAATC
ACGCCGCGTCGTCTCCATTCCTCCGGCTCGCGCCGTCACAGCGTCAAGAT
ATCTCACCGAGAACTGATATCTCTTACAGACGCTCCTCCTTCAGTTCAAC
CCGCCGCACACCCTCAAAAGCTCAACCCACCACAGCCAAAGCAACCTTCA
CCTACAGAATTGAGCGCGGCGAATACAAGCACTGGTTCGAACGTGTTTCT
TACTCCTGTTCGGGCCTCAAGGAAACAACGTCTCCAGCTTGGTGCCGATA
CGATTGTCACTCCGCTCGTGCTCGAATGTTGGAACAATTTGGTTTCAGTT
ACACTCCTAATCATTCTCTTCAATGATCACGTCACGCATCTGCAACGTTA
TAAGGGGTATCCCACATGTACAGAAACATCGTTAGTTTCGTCTTCTCTGC
GCTTACCTTCTTCACCGGAGAGCTGTGTGAGGAGAATACTATCACTGAGT
TTTGGTCGATCATTTTGA