Gcaud8404.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8404.t1
Unique Name	Gcaud8404.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	497

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1098_length_13905_cov_4.567830	contig	NODE_1098_length_13905_cov_4.567830:1982..3472 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8404	Gcaud8404	Gracilaria caudata M_176_S67 male	gene	NODE_1098_length_13905_cov_4.567830 1982..3472 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8404.t1.start1	Gcaud8404.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1098_length_13905_cov_4.567830 1982..1984 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8404.t1.CDS1	Gcaud8404.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1098_length_13905_cov_4.567830 1982..3472 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8404.t1.exon1	Gcaud8404.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1098_length_13905_cov_4.567830 1982..3472 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8404.t1.stop1	Gcaud8404.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1098_length_13905_cov_4.567830 3470..3472 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8404.t1	Gcaud8404.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1098_length_13905_cov_4.567830 1982..3472 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1098_length_13905_cov_4.567830:1982..3472+
coding sequence from alignment at NODE_1098_length_13905_cov_4.567830:1982..3472+

mRNA sequence

>Gcaud8404.t1 ID=Gcaud8404.t1|Name=Gcaud8404.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=497bp
MSSPVERFDEAPLSIPSTQPVTDPEETVLIINGNRYDVAQVQAILAQVEA
SLARLTLQFSRLYEQMMLSDVPNEEADGVRLKHFATNAFVNGVLVERPFN
KEFIDLMEGLIARVQLETLMYRFKYGHDYVHIEDIRIMIAAILHFKKLHS
MYKEIPPNEAQIWPQIPGDLYEEACRIAAKRYEDNSDRRASAMLFSQLLD
NRLVTIKTPAVGNVDTYAYVTNGDTSRILWDCIEGIPVEHMTTKGDKIYE
LSKGDLEMSDALDMLTSDAVRAIRTRKGVTYHNAGFAVIEDWTYSNSKSR
YIEVSTNPVLVIIAYLYLAIAIAVSVAAAVLNWGQRGSILQRIFDAVVLL
LIFILGALIPITLVTGAKDAHKILLYGRQRLQGLESLAEFHGTTMKTLLT
SLARAKGVRFLKEANSCYVEGPKTGTVELPLTLRECDLNDVVIIGKEYAY
DLRGKWRYVEAKRGVVHFGNEIPADMPAIAVRHPGKRFVGGSSHSL*

spliced messenger RNA

>Gcaud8404.t1 ID=Gcaud8404.t1|Name=Gcaud8404.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1491bp|location=Sequence derived from alignment at NODE_1098_length_13905_cov_4.567830:1982..3472+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCGCCAGTCGAGAGATTCGATGAGGCGCCGCTCTCCATTCCGTC
GACGCAGCCGGTAACTGATCCAGAAGAAACTGTACTGATTATTAACGGAA
ATCGCTATGATGTTGCTCAAGTTCAAGCAATCTTGGCTCAGGTTGAAGCT
AGTCTCGCGAGGCTTACTCTTCAGTTCTCCAGACTATACGAACAAATGAT
GTTGAGTGATGTTCCCAATGAAGAAGCCGATGGAGTTCGTTTGAAGCATT
TCGCCACCAACGCATTTGTGAACGGTGTTCTTGTGGAGCGACCGTTCAAC
AAAGAGTTTATTGATTTGATGGAAGGACTTATAGCAAGAGTCCAGCTGGA
AACCCTCATGTACAGATTCAAATATGGACATGATTACGTCCACATCGAAG
ATATTCGTATAATGATAGCCGCAATCCTTCACTTCAAGAAATTGCACTCA
ATGTACAAAGAAATCCCCCCCAATGAGGCACAGATCTGGCCTCAGATACC
TGGAGACCTGTATGAAGAAGCGTGCAGAATAGCAGCCAAGCGATATGAAG
ATAACTCGGACAGACGGGCATCCGCTATGCTTTTTTCTCAGCTTTTGGAC
AATCGGCTAGTGACAATCAAGACTCCTGCTGTCGGAAACGTCGATACTTA
TGCATATGTTACTAATGGAGACACATCTCGAATCCTTTGGGATTGTATAG
AAGGCATTCCCGTGGAACATATGACCACAAAGGGGGACAAGATTTACGAG
CTATCAAAGGGTGATCTCGAGATGTCTGACGCGCTGGACATGCTGACATC
AGATGCTGTGAGAGCTATCCGAACAAGGAAAGGAGTGACCTACCACAACG
CGGGTTTTGCGGTCATTGAGGATTGGACTTACTCTAACTCCAAATCGCGG
TACATTGAGGTGTCAACAAATCCAGTTCTTGTGATCATAGCCTACTTATA
TCTGGCCATAGCGATCGCTGTTTCTGTTGCTGCAGCCGTCCTCAATTGGG
GCCAGCGAGGCTCTATCCTACAGCGCATATTTGATGCGGTTGTATTGTTG
TTGATATTCATCTTGGGAGCGTTGATTCCCATTACTCTGGTGACTGGCGC
GAAGGATGCCCACAAAATCTTGTTGTATGGTAGACAGAGGCTGCAAGGAC
TTGAAAGCCTGGCGGAATTCCATGGCACAACTATGAAAACTTTGCTAACT
TCGTTGGCGCGAGCAAAGGGCGTTCGGTTTCTGAAAGAGGCCAACTCGTG
CTATGTTGAGGGCCCCAAAACGGGAACAGTGGAATTACCTCTCACACTCA
GAGAGTGTGATTTGAACGACGTCGTCATTATTGGCAAAGAATATGCGTAT
GATCTAAGAGGAAAATGGAGATACGTTGAAGCGAAGCGGGGCGTGGTTCA
TTTCGGAAATGAGATTCCAGCTGACATGCCGGCTATTGCAGTACGACATC
CAGGAAAGCGGTTTGTTGGGGGATCTAGTCATAGTTTATGA

protein sequence of Gcaud8404.t1

>Gcaud8404.t1 ID=Gcaud8404.t1|Name=Gcaud8404.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=497bp
MSSPVERFDEAPLSIPSTQPVTDPEETVLIINGNRYDVAQVQAILAQVEA
SLARLTLQFSRLYEQMMLSDVPNEEADGVRLKHFATNAFVNGVLVERPFN
KEFIDLMEGLIARVQLETLMYRFKYGHDYVHIEDIRIMIAAILHFKKLHS
MYKEIPPNEAQIWPQIPGDLYEEACRIAAKRYEDNSDRRASAMLFSQLLD
NRLVTIKTPAVGNVDTYAYVTNGDTSRILWDCIEGIPVEHMTTKGDKIYE
LSKGDLEMSDALDMLTSDAVRAIRTRKGVTYHNAGFAVIEDWTYSNSKSR
YIEVSTNPVLVIIAYLYLAIAIAVSVAAAVLNWGQRGSILQRIFDAVVLL
LIFILGALIPITLVTGAKDAHKILLYGRQRLQGLESLAEFHGTTMKTLLT
SLARAKGVRFLKEANSCYVEGPKTGTVELPLTLRECDLNDVVIIGKEYAY
DLRGKWRYVEAKRGVVHFGNEIPADMPAIAVRHPGKRFVGGSSHSL*

mRNA from alignment at NODE_1098_length_13905_cov_4.567830:1982..3472+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8404.t1 ID=Gcaud8404.t1|Name=Gcaud8404.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1491bp|location=Sequence derived from alignment at NODE_1098_length_13905_cov_4.567830:1982..3472+ (Gracilaria caudata M_176_S67 male)
ATGTCTTCGCCAGTCGAGAGATTCGATGAGGCGCCGCTCTCCATTCCGTC
GACGCAGCCGGTAACTGATCCAGAAGAAACTGTACTGATTATTAACGGAA
ATCGCTATGATGTTGCTCAAGTTCAAGCAATCTTGGCTCAGGTTGAAGCT
AGTCTCGCGAGGCTTACTCTTCAGTTCTCCAGACTATACGAACAAATGAT
GTTGAGTGATGTTCCCAATGAAGAAGCCGATGGAGTTCGTTTGAAGCATT
TCGCCACCAACGCATTTGTGAACGGTGTTCTTGTGGAGCGACCGTTCAAC
AAAGAGTTTATTGATTTGATGGAAGGACTTATAGCAAGAGTCCAGCTGGA
AACCCTCATGTACAGATTCAAATATGGACATGATTACGTCCACATCGAAG
ATATTCGTATAATGATAGCCGCAATCCTTCACTTCAAGAAATTGCACTCA
ATGTACAAAGAAATCCCCCCCAATGAGGCACAGATCTGGCCTCAGATACC
TGGAGACCTGTATGAAGAAGCGTGCAGAATAGCAGCCAAGCGATATGAAG
ATAACTCGGACAGACGGGCATCCGCTATGCTTTTTTCTCAGCTTTTGGAC
AATCGGCTAGTGACAATCAAGACTCCTGCTGTCGGAAACGTCGATACTTA
TGCATATGTTACTAATGGAGACACATCTCGAATCCTTTGGGATTGTATAG
AAGGCATTCCCGTGGAACATATGACCACAAAGGGGGACAAGATTTACGAG
CTATCAAAGGGTGATCTCGAGATGTCTGACGCGCTGGACATGCTGACATC
AGATGCTGTGAGAGCTATCCGAACAAGGAAAGGAGTGACCTACCACAACG
CGGGTTTTGCGGTCATTGAGGATTGGACTTACTCTAACTCCAAATCGCGG
TACATTGAGGTGTCAACAAATCCAGTTCTTGTGATCATAGCCTACTTATA
TCTGGCCATAGCGATCGCTGTTTCTGTTGCTGCAGCCGTCCTCAATTGGG
GCCAGCGAGGCTCTATCCTACAGCGCATATTTGATGCGGTTGTATTGTTG
TTGATATTCATCTTGGGAGCGTTGATTCCCATTACTCTGGTGACTGGCGC
GAAGGATGCCCACAAAATCTTGTTGTATGGTAGACAGAGGCTGCAAGGAC
TTGAAAGCCTGGCGGAATTCCATGGCACAACTATGAAAACTTTGCTAACT
TCGTTGGCGCGAGCAAAGGGCGTTCGGTTTCTGAAAGAGGCCAACTCGTG
CTATGTTGAGGGCCCCAAAACGGGAACAGTGGAATTACCTCTCACACTCA
GAGAGTGTGATTTGAACGACGTCGTCATTATTGGCAAAGAATATGCGTAT
GATCTAAGAGGAAAATGGAGATACGTTGAAGCGAAGCGGGGCGTGGTTCA
TTTCGGAAATGAGATTCCAGCTGACATGCCGGCTATTGCAGTACGACATC
CAGGAAAGCGGTTTGTTGGGGGATCTAGTCATAGTTTATGA

Coding sequence (CDS) from alignment at NODE_1098_length_13905_cov_4.567830:1982..3472+

>Gcaud8404.t1 ID=Gcaud8404.t1|Name=Gcaud8404.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1491bp|location=Sequence derived from alignment at NODE_1098_length_13905_cov_4.567830:1982..3472+ (Gracilaria caudata M_176_S67 male)
ATGTCTTCGCCAGTCGAGAGATTCGATGAGGCGCCGCTCTCCATTCCGTC
GACGCAGCCGGTAACTGATCCAGAAGAAACTGTACTGATTATTAACGGAA
ATCGCTATGATGTTGCTCAAGTTCAAGCAATCTTGGCTCAGGTTGAAGCT
AGTCTCGCGAGGCTTACTCTTCAGTTCTCCAGACTATACGAACAAATGAT
GTTGAGTGATGTTCCCAATGAAGAAGCCGATGGAGTTCGTTTGAAGCATT
TCGCCACCAACGCATTTGTGAACGGTGTTCTTGTGGAGCGACCGTTCAAC
AAAGAGTTTATTGATTTGATGGAAGGACTTATAGCAAGAGTCCAGCTGGA
AACCCTCATGTACAGATTCAAATATGGACATGATTACGTCCACATCGAAG
ATATTCGTATAATGATAGCCGCAATCCTTCACTTCAAGAAATTGCACTCA
ATGTACAAAGAAATCCCCCCCAATGAGGCACAGATCTGGCCTCAGATACC
TGGAGACCTGTATGAAGAAGCGTGCAGAATAGCAGCCAAGCGATATGAAG
ATAACTCGGACAGACGGGCATCCGCTATGCTTTTTTCTCAGCTTTTGGAC
AATCGGCTAGTGACAATCAAGACTCCTGCTGTCGGAAACGTCGATACTTA
TGCATATGTTACTAATGGAGACACATCTCGAATCCTTTGGGATTGTATAG
AAGGCATTCCCGTGGAACATATGACCACAAAGGGGGACAAGATTTACGAG
CTATCAAAGGGTGATCTCGAGATGTCTGACGCGCTGGACATGCTGACATC
AGATGCTGTGAGAGCTATCCGAACAAGGAAAGGAGTGACCTACCACAACG
CGGGTTTTGCGGTCATTGAGGATTGGACTTACTCTAACTCCAAATCGCGG
TACATTGAGGTGTCAACAAATCCAGTTCTTGTGATCATAGCCTACTTATA
TCTGGCCATAGCGATCGCTGTTTCTGTTGCTGCAGCCGTCCTCAATTGGG
GCCAGCGAGGCTCTATCCTACAGCGCATATTTGATGCGGTTGTATTGTTG
TTGATATTCATCTTGGGAGCGTTGATTCCCATTACTCTGGTGACTGGCGC
GAAGGATGCCCACAAAATCTTGTTGTATGGTAGACAGAGGCTGCAAGGAC
TTGAAAGCCTGGCGGAATTCCATGGCACAACTATGAAAACTTTGCTAACT
TCGTTGGCGCGAGCAAAGGGCGTTCGGTTTCTGAAAGAGGCCAACTCGTG
CTATGTTGAGGGCCCCAAAACGGGAACAGTGGAATTACCTCTCACACTCA
GAGAGTGTGATTTGAACGACGTCGTCATTATTGGCAAAGAATATGCGTAT
GATCTAAGAGGAAAATGGAGATACGTTGAAGCGAAGCGGGGCGTGGTTCA
TTTCGGAAATGAGATTCCAGCTGACATGCCGGCTATTGCAGTACGACATC
CAGGAAAGCGGTTTGTTGGGGGATCTAGTCATAGTTTATGA