Gcaud84.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud84.t1
Unique Name	Gcaud84.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	531

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5138_length_1764_cov_2.744770	contig	NODE_5138_length_1764_cov_2.744770:66..1658 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3075.A0A087SHD9
PFAMs	TCR
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K21776
KEGG Pathway	ko04218,map04218
Evalue	4.71e-23
EggNOG OGs	KOG1171@1\|root,KOG1171@2759\|Eukaryota,37RBY@33090\|Viridiplantae,34IA0@3041\|Chlorophyta
Description	Tesmin/TSO1-like CXC domain
COG category	P
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud84	Gcaud84	Gracilaria caudata M_176_S67 male	gene	NODE_5138_length_1764_cov_2.744770 66..1658 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud84.t1.start1	Gcaud84.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5138_length_1764_cov_2.744770 66..68 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud84.t1.CDS1	Gcaud84.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5138_length_1764_cov_2.744770 66..1658 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud84.t1.exon1	Gcaud84.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5138_length_1764_cov_2.744770 66..1658 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud84.t1.stop1	Gcaud84.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_5138_length_1764_cov_2.744770 1656..1658 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud84.t1	Gcaud84.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5138_length_1764_cov_2.744770 66..1658 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5138_length_1764_cov_2.744770:66..1658+
coding sequence from alignment at NODE_5138_length_1764_cov_2.744770:66..1658+

mRNA sequence

>Gcaud84.t1 ID=Gcaud84.t1|Name=Gcaud84.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=531bp
MPEPRTPVKRSSSALPALHSPLCAPSPDPLFAASFSTPQPSPSAARFNPD
DLLVSPPPPASTPDLRRKLFAAADALFPPASCVRAHSSIASLSPPPPPPL
MRTPGAANAREAPLAGSTHGAENTRKQSRSQSQPQSQSQSQSQSQSQSQQ
HTQPQPQPQPQPQPQPQPQPQPQPQPPVADANADADASVSHTRAPQNTPL
QLTAIKCNCKASRCLKLYCPCFASSAVCAPTCTCQNCRNTPHTYTAVKKA
RSAVLSRDPRAFEPRVKLASAAADIHTKGCNCRKGCSKKYCVCRELKVTC
GPRCTCSGPKGCQNGKNASSSSGTQLTTTRPTFSRLKKRNHIEQLTPPSP
LHAIATAFSPGFPPLAALSPPLKLSDDPFDELRDVMTDHNDPLVSPDAIK
TRNACSSFIPPVNRRIALDDDAFQDDAQLSVGTQRKAGAGAAAAAAAAAA
AANASNTPKSALKLAAVELDCSPTTGVKALTSPSKTRSAATGGSLRRADK
IEKFSRPRLPRILRVKMGTGRALRRFNSMI*

spliced messenger RNA

>Gcaud84.t1 ID=Gcaud84.t1|Name=Gcaud84.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1593bp|location=Sequence derived from alignment at NODE_5138_length_1764_cov_2.744770:66..1658+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGAGCCGCGCACGCCCGTCAAGCGCAGCAGCAGCGCGCTGCCCGC
GCTGCACTCGCCGCTGTGCGCGCCGTCGCCCGATCCGCTGTTCGCCGCGT
CGTTCTCCACGCCGCAACCGTCGCCATCGGCGGCGCGTTTCAATCCCGAT
GACCTGCTTGTGTCGCCGCCACCGCCCGCCTCCACGCCCGATCTGCGACG
CAAGTTGTTTGCCGCCGCCGACGCCTTGTTTCCGCCCGCCTCTTGCGTGC
GCGCACACTCTTCGATTGCGTCGCTTTcgccgccgccgccgccgccgcTC
ATGCGAACGCCGGGCGCGGCGAACgcgcgagaggcgccgctggctggcag
tacgcatggcgcggagaacacgcgcaaacagtcgcggtcgcagtcgcagc
cacagtcgcagtcgcagtcgcagtcgcagtcgcagtcgcagtcgcagcag
catacacagccgcagccgcagccgcagccgcagccgcagccgcagccgca
gccgcagccgcagccgcagccgcagccgcccgtcgcggacgcgaacgccg
acgctgacgccagcgtgtctcatacgcgcgcgccgcaaaacacgccgttg
cagctcaccgccatcaagtgcaactgcaaggccagtcgctgtctcaagct
atactgcccgtgtttcgcgtcatccgcggtgtgtgcgcccacctgcacgt
gccaaaactgccgcaacacgccgcacacctacaccgccgtgaagaaggcc
aggAGCGCCGTGCTGTCCAGAGACCCGCGCGCGTTCGAACCGCGCGTGAA
ACTGGCGTCTGCCGCGGCTGATATCCACACCAAGGGCTGTAATTGTCGAA
AGGGATGCTCGAAGAAGTACTGCGTGTGTCGCGAACTGAAGGTGACGTGT
GGTCCGCGTTGCACGTGCTCCGGGCCGAAGGGCTGTCAGAATGGGAAAAA
CGCTTCGTCTTCGTCGGGCACGCAGTTGACCACAACACGACCGACGTTTT
CGCGACTGAAGAAACGAAACCACATTGAACAGCTCACGCCGCCGTCGCCG
TTGCACGCGATTGCCACCGCGTTCAGTCCGGGCTTTCCGCCTCTGGCGGC
GCTGTCGCCGCCGTTGAAATTGAGTGATGACCCGTTTGATGAGCTGCGAG
ATGTGATGACTGATCATAATGATCCGCTTGTCTCTCCGGATGCAATCAAG
ACGAGGAACGCATGCTCGTCGTTCATTCCACCTGTGAACCGGCGCATTGC
GCTGGACGATGACGCGTTCCAGGACGACGCGCAGCTGTCGGTGGGCACGC
AGCGCAAAGCGGGCGCTGGCgcggcggcggcggcggcggcggcggcggcg
gcggcgAATGCGTCCAATACGCCGAAGAGCGCGCTCAAGTTGGCGGCGGT
GGAGCTGGATTGCTCGCCCACCACGGGCGTGAAGGCGCTCACGTCGCCAT
CGAAGACGCGCTCCGCGGCCACCGGCGGCTCGTTGCGCAGGGCGGATAAG
ATTGAAAAGTTTAGTCGACCGCGACTTCCGCGCATTCTGCGCGTGAAGAT
GGGCACGGGACGCGCGTTGAGACGGTTCAACAGTATGATATGA

protein sequence of Gcaud84.t1

>Gcaud84.t1 ID=Gcaud84.t1|Name=Gcaud84.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=531bp
MPEPRTPVKRSSSALPALHSPLCAPSPDPLFAASFSTPQPSPSAARFNPD
DLLVSPPPPASTPDLRRKLFAAADALFPPASCVRAHSSIASLSPPPPPPL
MRTPGAANAREAPLAGSTHGAENTRKQSRSQSQPQSQSQSQSQSQSQSQQ
HTQPQPQPQPQPQPQPQPQPQPQPQPPVADANADADASVSHTRAPQNTPL
QLTAIKCNCKASRCLKLYCPCFASSAVCAPTCTCQNCRNTPHTYTAVKKA
RSAVLSRDPRAFEPRVKLASAAADIHTKGCNCRKGCSKKYCVCRELKVTC
GPRCTCSGPKGCQNGKNASSSSGTQLTTTRPTFSRLKKRNHIEQLTPPSP
LHAIATAFSPGFPPLAALSPPLKLSDDPFDELRDVMTDHNDPLVSPDAIK
TRNACSSFIPPVNRRIALDDDAFQDDAQLSVGTQRKAGAGAAAAAAAAAA
AANASNTPKSALKLAAVELDCSPTTGVKALTSPSKTRSAATGGSLRRADK
IEKFSRPRLPRILRVKMGTGRALRRFNSMI*

mRNA from alignment at NODE_5138_length_1764_cov_2.744770:66..1658+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud84.t1 ID=Gcaud84.t1|Name=Gcaud84.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1593bp|location=Sequence derived from alignment at NODE_5138_length_1764_cov_2.744770:66..1658+ (Gracilaria caudata M_176_S67 male)
ATGCCCGAGCCGCGCACGCCCGTCAAGCGCAGCAGCAGCGCGCTGCCCGC
GCTGCACTCGCCGCTGTGCGCGCCGTCGCCCGATCCGCTGTTCGCCGCGT
CGTTCTCCACGCCGCAACCGTCGCCATCGGCGGCGCGTTTCAATCCCGAT
GACCTGCTTGTGTCGCCGCCACCGCCCGCCTCCACGCCCGATCTGCGACG
CAAGTTGTTTGCCGCCGCCGACGCCTTGTTTCCGCCCGCCTCTTGCGTGC
GCGCACACTCTTCGATTGCGTCGCTTTcgccgccgccgccgccgccgcTC
ATGCGAACGCCGGGCGCGGCGAACgcgcgagaggcgccgctggctggcag
tacgcatggcgcggagaacacgcgcaaacagtcgcggtcgcagtcgcagc
cacagtcgcagtcgcagtcgcagtcgcagtcgcagtcgcagtcgcagcag
catacacagccgcagccgcagccgcagccgcagccgcagccgcagccgca
gccgcagccgcagccgcagccgcagccgcccgtcgcggacgcgaacgccg
acgctgacgccagcgtgtctcatacgcgcgcgccgcaaaacacgccgttg
cagctcaccgccatcaagtgcaactgcaaggccagtcgctgtctcaagct
atactgcccgtgtttcgcgtcatccgcggtgtgtgcgcccacctgcacgt
gccaaaactgccgcaacacgccgcacacctacaccgccgtgaagaaggcc
aggAGCGCCGTGCTGTCCAGAGACCCGCGCGCGTTCGAACCGCGCGTGAA
ACTGGCGTCTGCCGCGGCTGATATCCACACCAAGGGCTGTAATTGTCGAA
AGGGATGCTCGAAGAAGTACTGCGTGTGTCGCGAACTGAAGGTGACGTGT
GGTCCGCGTTGCACGTGCTCCGGGCCGAAGGGCTGTCAGAATGGGAAAAA
CGCTTCGTCTTCGTCGGGCACGCAGTTGACCACAACACGACCGACGTTTT
CGCGACTGAAGAAACGAAACCACATTGAACAGCTCACGCCGCCGTCGCCG
TTGCACGCGATTGCCACCGCGTTCAGTCCGGGCTTTCCGCCTCTGGCGGC
GCTGTCGCCGCCGTTGAAATTGAGTGATGACCCGTTTGATGAGCTGCGAG
ATGTGATGACTGATCATAATGATCCGCTTGTCTCTCCGGATGCAATCAAG
ACGAGGAACGCATGCTCGTCGTTCATTCCACCTGTGAACCGGCGCATTGC
GCTGGACGATGACGCGTTCCAGGACGACGCGCAGCTGTCGGTGGGCACGC
AGCGCAAAGCGGGCGCTGGCgcggcggcggcggcggcggcggcggcggcg
gcggcgAATGCGTCCAATACGCCGAAGAGCGCGCTCAAGTTGGCGGCGGT
GGAGCTGGATTGCTCGCCCACCACGGGCGTGAAGGCGCTCACGTCGCCAT
CGAAGACGCGCTCCGCGGCCACCGGCGGCTCGTTGCGCAGGGCGGATAAG
ATTGAAAAGTTTAGTCGACCGCGACTTCCGCGCATTCTGCGCGTGAAGAT
GGGCACGGGACGCGCGTTGAGACGGTTCAACAGTATGATATGA

Coding sequence (CDS) from alignment at NODE_5138_length_1764_cov_2.744770:66..1658+

>Gcaud84.t1 ID=Gcaud84.t1|Name=Gcaud84.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1593bp|location=Sequence derived from alignment at NODE_5138_length_1764_cov_2.744770:66..1658+ (Gracilaria caudata M_176_S67 male)
ATGCCCGAGCCGCGCACGCCCGTCAAGCGCAGCAGCAGCGCGCTGCCCGC
GCTGCACTCGCCGCTGTGCGCGCCGTCGCCCGATCCGCTGTTCGCCGCGT
CGTTCTCCACGCCGCAACCGTCGCCATCGGCGGCGCGTTTCAATCCCGAT
GACCTGCTTGTGTCGCCGCCACCGCCCGCCTCCACGCCCGATCTGCGACG
CAAGTTGTTTGCCGCCGCCGACGCCTTGTTTCCGCCCGCCTCTTGCGTGC
GCGCACACTCTTCGATTGCGTCGCTTTcgccgccgccgccgccgccgcTC
ATGCGAACGCCGGGCGCGGCGAACgcgcgagaggcgccgctggctggcag
tacgcatggcgcggagaacacgcgcaaacagtcgcggtcgcagtcgcagc
cacagtcgcagtcgcagtcgcagtcgcagtcgcagtcgcagtcgcagcag
catacacagccgcagccgcagccgcagccgcagccgcagccgcagccgca
gccgcagccgcagccgcagccgcagccgcccgtcgcggacgcgaacgccg
acgctgacgccagcgtgtctcatacgcgcgcgccgcaaaacacgccgttg
cagctcaccgccatcaagtgcaactgcaaggccagtcgctgtctcaagct
atactgcccgtgtttcgcgtcatccgcggtgtgtgcgcccacctgcacgt
gccaaaactgccgcaacacgccgcacacctacaccgccgtgaagaaggcc
aggAGCGCCGTGCTGTCCAGAGACCCGCGCGCGTTCGAACCGCGCGTGAA
ACTGGCGTCTGCCGCGGCTGATATCCACACCAAGGGCTGTAATTGTCGAA
AGGGATGCTCGAAGAAGTACTGCGTGTGTCGCGAACTGAAGGTGACGTGT
GGTCCGCGTTGCACGTGCTCCGGGCCGAAGGGCTGTCAGAATGGGAAAAA
CGCTTCGTCTTCGTCGGGCACGCAGTTGACCACAACACGACCGACGTTTT
CGCGACTGAAGAAACGAAACCACATTGAACAGCTCACGCCGCCGTCGCCG
TTGCACGCGATTGCCACCGCGTTCAGTCCGGGCTTTCCGCCTCTGGCGGC
GCTGTCGCCGCCGTTGAAATTGAGTGATGACCCGTTTGATGAGCTGCGAG
ATGTGATGACTGATCATAATGATCCGCTTGTCTCTCCGGATGCAATCAAG
ACGAGGAACGCATGCTCGTCGTTCATTCCACCTGTGAACCGGCGCATTGC
GCTGGACGATGACGCGTTCCAGGACGACGCGCAGCTGTCGGTGGGCACGC
AGCGCAAAGCGGGCGCTGGCgcggcggcggcggcggcggcggcggcggcg
gcggcgAATGCGTCCAATACGCCGAAGAGCGCGCTCAAGTTGGCGGCGGT
GGAGCTGGATTGCTCGCCCACCACGGGCGTGAAGGCGCTCACGTCGCCAT
CGAAGACGCGCTCCGCGGCCACCGGCGGCTCGTTGCGCAGGGCGGATAAG
ATTGAAAAGTTTAGTCGACCGCGACTTCCGCGCATTCTGCGCGTGAAGAT
GGGCACGGGACGCGCGTTGAGACGGTTCAACAGTATGATATGA