Gcaud8396.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8396.t1
Unique NameGcaud8396.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length496
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1597_length_9575_cov_4.430620contigNODE_1597_length_9575_cov_4.430620:4121..5608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709240.1
Preferred nameUGP2
PFAMsUDPGP
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00963,ko:K02987,ko:K17260,ko:K17491
KEGG ReactionR00289
KEGG Pathwayko00040,ko00052,ko00500,ko00520,ko01100,ko01130,ko03010,ko04138,ko04212,ko04530,ko04922,map00040,map00052,map00500,map00520,map01100,map01130,map03010,map04138,map04212,map04530,map04922
KEGG ModuleM00129,M00177,M00179,M00361,M00362,M00549
GOsGO:0000045,GO:0000166,GO:0000271,GO:0003674,GO:0003824,GO:0003983,GO:0005488,GO:0005515,GO:0005536,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0005984,GO:0005985,GO:0005991,GO:0005992,GO:0006011,GO:0006065,GO:0006073,GO:0006077,GO:0006078,GO:0006082,GO:0006091,GO:0006112,GO:0006139,GO:0006464,GO:0006486,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006914,GO:0006950,GO:0006970,GO:0006996,GO:0007033,GO:0007154,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009226,GO:0009250,GO:0009267,GO:0009277,GO:0009311,GO:0009312,GO:0009555,GO:0009605,GO:0009628,GO:0009651,GO:0009986,GO:0009987,GO:0009991,GO:0010035,GO:0010038,GO:0010494,GO:0010941,GO:0010942,GO:0015980,GO:0016020,GO:0016036,GO:0016043,GO:0016051,GO:0016053,GO:0016236,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019103,GO:0019255,GO:0019438,GO:0019538,GO:0019637,GO:0019752,GO:0022607,GO:0030243,GO:0030244,GO:0030246,GO:0030312,GO:0030445,GO:0030587,GO:0031154,GO:0031667,GO:0031668,GO:0031669,GO:0032501,GO:0032502,GO:0032553,GO:0032557,GO:0032991,GO:0033036,GO:0033037,GO:0033554,GO:0033692,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036094,GO:0036211,GO:0036296,GO:0036464,GO:0042221,GO:0042545,GO:0042594,GO:0042802,GO:0042995,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043413,GO:0043436,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0046351,GO:0046394,GO:0046398,GO:0046483,GO:0046686,GO:0048029,GO:0048229,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051273,GO:0051274,GO:0051641,GO:0051703,GO:0051704,GO:0051716,GO:0051748,GO:0052386,GO:0052543,GO:0052545,GO:0055086,GO:0055093,GO:0055114,GO:0061919,GO:0065007,GO:0070085,GO:0070482,GO:0070569,GO:0070727,GO:0070925,GO:0071496,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0090406,GO:0090702,GO:0097159,GO:0097367,GO:0099120,GO:0120025,GO:1901135,GO:1901137,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1905037,GO:1990904
Evalue2.51e-238
EggNOG OGsCOG4284@1|root,KOG2638@2759|Eukaryota
EC2.7.7.9
DescriptionUTP:glucose-1-phosphate uridylyltransferase activity
COG categoryG
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01009,ko03011,ko03400,ko04131,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8396Gcaud8396Gracilaria caudata M_176_S67 malegeneNODE_1597_length_9575_cov_4.430620 4121..5608 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8396.t1.start1Gcaud8396.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1597_length_9575_cov_4.430620 4121..4123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8396.t1.CDS1Gcaud8396.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1597_length_9575_cov_4.430620 4121..5608 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8396.t1.exon1Gcaud8396.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1597_length_9575_cov_4.430620 4121..5608 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8396.t1.stop1Gcaud8396.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1597_length_9575_cov_4.430620 5606..5608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8396.t1Gcaud8396.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1597_length_9575_cov_4.430620 4121..5608 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8396.t1 ID=Gcaud8396.t1|Name=Gcaud8396.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=496bp
MNRDSRSLQDFKGVMDKSAASSVSEKLTVMNQMAADELEKMTESETAGFV
ELYGRYMNERSKKAELKWDLIEQPSENMLQKYDTLPAPASDEEQTALLSK
LAVLKLNGGLGTSMGCKGPKSVIEVRDDTTFLDLIVQQIGQLNKYHPKAN
VPLLLMNSFNTDSETAKIIRKYQDTSVTITTFQQSRYPRIVKESLEPMPL
THDGYAHEDWYPPGHGDFFQSIYASGLVDTLLAQGKEYIFVSNVDNLGAT
VDLNILKNAVDREVEYCMELTDKTRADIKGGTIISYDGKVSLLEVAQVPS
KYIEEFKSVSKFKVFNTNNIWVSLRAIKRVMQAGEMKLDIIVNNKEVKGT
KVIQLETAIGAAIGYFNNACGVNVPRSRFLPVKSTSDLMLIQSNMYNLKS
GSLVMNPARQFATTPVIKLGKEFKKVAQYLERLGSIPDILELDHLTVSGD
VYFGANTTLKGTVIVVANPGNTIMIPGGSVLENKVVVGSLHVIPH*
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spliced messenger RNA

>Gcaud8396.t1 ID=Gcaud8396.t1|Name=Gcaud8396.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1488bp|location=Sequence derived from alignment at NODE_1597_length_9575_cov_4.430620:4121..5608+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCGCGATTCAAGGTCTTTGCAAGACTTCAAGGGCGTCATGGACAA
GTCTGCCGCTTCCTCGGTCAGCGAAAAGCTCACCGTCATGAACCAGATGG
CCGCCGATGAGCTCGAGAAGATGACAGAATCTGAGACCGCCGGTTTCGTC
GAGCTTTACGGTCGCTACATGAACGAGCGCTCAAAGAAAGCTGAACTCAA
GTGGGATCTTATCGAACAACCCAGTGAAAACATGTTGCAGAAGTACGATA
CTTTACCAGCACCGGCTTCTGACGAGGAGCAGACCGCCCTTCTTTCTAAG
CTCGCCGTCCTCAAACTCAATGGTGGTCTTGGTACTTCCATGGGCTGCAA
GGGACCCAAAAGCGTCATCGAAGTTCGTGATGACACCACCTTTTTGGACC
TCATTGTTCAGCAAATAGGCCAACTTAACAAGTATCATCCGAAAGCAAAT
GTTCCGCTCCTTCTCATGAACTCTTTCAACACTGATTCTGAGACCGCAAA
GATCATTCGCAAATATCAGGATACAAGTGTTACCATCACCACTTTTCAGC
AATCTCGCTATCCGAGGATCGTAAAGGAGTCTCTTGAACCGATGCCTCTC
ACTCACGACGGTTATGCCCACGAGGACTGGTACCCTCCAGGTCATGGAGA
TTTCTTCCAATCAATTTATGCATCTGGTCTGGTTGACACCCTTCTCGCTC
AAGGCAAGGAATATATTTTTGTCTCAAACGTTGACAATCTTGGTGCTACT
GTCGATCTCAATATTCTCAAGAATGCTGTCGACCGCGAAGTAGAGTACTG
CATGGAACTCACAGACAAGACTCGTGCCGACATCAAGGGCGGTACTATTA
TTTCTTACGATGGAAAGGTGTCGCTGCTGGAAGTCGCTCAGGTGCCCAGC
AAGTACATCGAAGAATTCAAGTCTGTTTCGAAGTTCAAGGTGTTTAACAC
AAACAATATTTGGGTCTCATTGCGAGCAATCAAGCGTGTCATGCAAGCCG
GCGAGATGAAGCTTGACATCATTGTAAACAACAAGGAAGTCAAGGGTACT
AAGGTCATCCAGCTTGAAACTGCTATTGGAGCAGCCATTGGCTACTTCAA
CAATGCGTGTGGTGTCAACGTTCCTCGTTCCCGTTTCCTTCCTGTCAAGT
CTACCTCCGATCTTATGCTCATTCAAAGCAATATGTACAACCTCAAATCT
GGTTCTCTGGTAATGAACCCTGCTCGCCAGTTCGCCACCACTCCAGTGAT
TAAGCTTGGAAAGGAATTTAAGAAGGTCGCTCAGTATCTTGAGCGTCTGG
GTAGCATTCCGGATATTTTGGAGCTTGACCACCTCACTGTCTCAGGTGAT
GTCTACTTCGGAGCCAACACTACTTTGAAAGGAACTGTAATCGTTGTGGC
AAACCCTGGAAACACCATTATGATTCCAGGAGGTTCTGTTCTCGAGAACA
AAGTGGTTGTCGGTTCTCTCCATGTGATTCCGCATTAA
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protein sequence of Gcaud8396.t1

>Gcaud8396.t1 ID=Gcaud8396.t1|Name=Gcaud8396.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=496bp
MNRDSRSLQDFKGVMDKSAASSVSEKLTVMNQMAADELEKMTESETAGFV
ELYGRYMNERSKKAELKWDLIEQPSENMLQKYDTLPAPASDEEQTALLSK
LAVLKLNGGLGTSMGCKGPKSVIEVRDDTTFLDLIVQQIGQLNKYHPKAN
VPLLLMNSFNTDSETAKIIRKYQDTSVTITTFQQSRYPRIVKESLEPMPL
THDGYAHEDWYPPGHGDFFQSIYASGLVDTLLAQGKEYIFVSNVDNLGAT
VDLNILKNAVDREVEYCMELTDKTRADIKGGTIISYDGKVSLLEVAQVPS
KYIEEFKSVSKFKVFNTNNIWVSLRAIKRVMQAGEMKLDIIVNNKEVKGT
KVIQLETAIGAAIGYFNNACGVNVPRSRFLPVKSTSDLMLIQSNMYNLKS
GSLVMNPARQFATTPVIKLGKEFKKVAQYLERLGSIPDILELDHLTVSGD
VYFGANTTLKGTVIVVANPGNTIMIPGGSVLENKVVVGSLHVIPH*
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mRNA from alignment at NODE_1597_length_9575_cov_4.430620:4121..5608+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8396.t1 ID=Gcaud8396.t1|Name=Gcaud8396.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1488bp|location=Sequence derived from alignment at NODE_1597_length_9575_cov_4.430620:4121..5608+ (Gracilaria caudata M_176_S67 male)
ATGAACCGCGATTCAAGGTCTTTGCAAGACTTCAAGGGCGTCATGGACAA
GTCTGCCGCTTCCTCGGTCAGCGAAAAGCTCACCGTCATGAACCAGATGG
CCGCCGATGAGCTCGAGAAGATGACAGAATCTGAGACCGCCGGTTTCGTC
GAGCTTTACGGTCGCTACATGAACGAGCGCTCAAAGAAAGCTGAACTCAA
GTGGGATCTTATCGAACAACCCAGTGAAAACATGTTGCAGAAGTACGATA
CTTTACCAGCACCGGCTTCTGACGAGGAGCAGACCGCCCTTCTTTCTAAG
CTCGCCGTCCTCAAACTCAATGGTGGTCTTGGTACTTCCATGGGCTGCAA
GGGACCCAAAAGCGTCATCGAAGTTCGTGATGACACCACCTTTTTGGACC
TCATTGTTCAGCAAATAGGCCAACTTAACAAGTATCATCCGAAAGCAAAT
GTTCCGCTCCTTCTCATGAACTCTTTCAACACTGATTCTGAGACCGCAAA
GATCATTCGCAAATATCAGGATACAAGTGTTACCATCACCACTTTTCAGC
AATCTCGCTATCCGAGGATCGTAAAGGAGTCTCTTGAACCGATGCCTCTC
ACTCACGACGGTTATGCCCACGAGGACTGGTACCCTCCAGGTCATGGAGA
TTTCTTCCAATCAATTTATGCATCTGGTCTGGTTGACACCCTTCTCGCTC
AAGGCAAGGAATATATTTTTGTCTCAAACGTTGACAATCTTGGTGCTACT
GTCGATCTCAATATTCTCAAGAATGCTGTCGACCGCGAAGTAGAGTACTG
CATGGAACTCACAGACAAGACTCGTGCCGACATCAAGGGCGGTACTATTA
TTTCTTACGATGGAAAGGTGTCGCTGCTGGAAGTCGCTCAGGTGCCCAGC
AAGTACATCGAAGAATTCAAGTCTGTTTCGAAGTTCAAGGTGTTTAACAC
AAACAATATTTGGGTCTCATTGCGAGCAATCAAGCGTGTCATGCAAGCCG
GCGAGATGAAGCTTGACATCATTGTAAACAACAAGGAAGTCAAGGGTACT
AAGGTCATCCAGCTTGAAACTGCTATTGGAGCAGCCATTGGCTACTTCAA
CAATGCGTGTGGTGTCAACGTTCCTCGTTCCCGTTTCCTTCCTGTCAAGT
CTACCTCCGATCTTATGCTCATTCAAAGCAATATGTACAACCTCAAATCT
GGTTCTCTGGTAATGAACCCTGCTCGCCAGTTCGCCACCACTCCAGTGAT
TAAGCTTGGAAAGGAATTTAAGAAGGTCGCTCAGTATCTTGAGCGTCTGG
GTAGCATTCCGGATATTTTGGAGCTTGACCACCTCACTGTCTCAGGTGAT
GTCTACTTCGGAGCCAACACTACTTTGAAAGGAACTGTAATCGTTGTGGC
AAACCCTGGAAACACCATTATGATTCCAGGAGGTTCTGTTCTCGAGAACA
AAGTGGTTGTCGGTTCTCTCCATGTGATTCCGCATTAA
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Coding sequence (CDS) from alignment at NODE_1597_length_9575_cov_4.430620:4121..5608+

>Gcaud8396.t1 ID=Gcaud8396.t1|Name=Gcaud8396.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1488bp|location=Sequence derived from alignment at NODE_1597_length_9575_cov_4.430620:4121..5608+ (Gracilaria caudata M_176_S67 male)
ATGAACCGCGATTCAAGGTCTTTGCAAGACTTCAAGGGCGTCATGGACAA
GTCTGCCGCTTCCTCGGTCAGCGAAAAGCTCACCGTCATGAACCAGATGG
CCGCCGATGAGCTCGAGAAGATGACAGAATCTGAGACCGCCGGTTTCGTC
GAGCTTTACGGTCGCTACATGAACGAGCGCTCAAAGAAAGCTGAACTCAA
GTGGGATCTTATCGAACAACCCAGTGAAAACATGTTGCAGAAGTACGATA
CTTTACCAGCACCGGCTTCTGACGAGGAGCAGACCGCCCTTCTTTCTAAG
CTCGCCGTCCTCAAACTCAATGGTGGTCTTGGTACTTCCATGGGCTGCAA
GGGACCCAAAAGCGTCATCGAAGTTCGTGATGACACCACCTTTTTGGACC
TCATTGTTCAGCAAATAGGCCAACTTAACAAGTATCATCCGAAAGCAAAT
GTTCCGCTCCTTCTCATGAACTCTTTCAACACTGATTCTGAGACCGCAAA
GATCATTCGCAAATATCAGGATACAAGTGTTACCATCACCACTTTTCAGC
AATCTCGCTATCCGAGGATCGTAAAGGAGTCTCTTGAACCGATGCCTCTC
ACTCACGACGGTTATGCCCACGAGGACTGGTACCCTCCAGGTCATGGAGA
TTTCTTCCAATCAATTTATGCATCTGGTCTGGTTGACACCCTTCTCGCTC
AAGGCAAGGAATATATTTTTGTCTCAAACGTTGACAATCTTGGTGCTACT
GTCGATCTCAATATTCTCAAGAATGCTGTCGACCGCGAAGTAGAGTACTG
CATGGAACTCACAGACAAGACTCGTGCCGACATCAAGGGCGGTACTATTA
TTTCTTACGATGGAAAGGTGTCGCTGCTGGAAGTCGCTCAGGTGCCCAGC
AAGTACATCGAAGAATTCAAGTCTGTTTCGAAGTTCAAGGTGTTTAACAC
AAACAATATTTGGGTCTCATTGCGAGCAATCAAGCGTGTCATGCAAGCCG
GCGAGATGAAGCTTGACATCATTGTAAACAACAAGGAAGTCAAGGGTACT
AAGGTCATCCAGCTTGAAACTGCTATTGGAGCAGCCATTGGCTACTTCAA
CAATGCGTGTGGTGTCAACGTTCCTCGTTCCCGTTTCCTTCCTGTCAAGT
CTACCTCCGATCTTATGCTCATTCAAAGCAATATGTACAACCTCAAATCT
GGTTCTCTGGTAATGAACCCTGCTCGCCAGTTCGCCACCACTCCAGTGAT
TAAGCTTGGAAAGGAATTTAAGAAGGTCGCTCAGTATCTTGAGCGTCTGG
GTAGCATTCCGGATATTTTGGAGCTTGACCACCTCACTGTCTCAGGTGAT
GTCTACTTCGGAGCCAACACTACTTTGAAAGGAACTGTAATCGTTGTGGC
AAACCCTGGAAACACCATTATGATTCCAGGAGGTTCTGTTCTCGAGAACA
AAGTGGTTGTCGGTTCTCTCCATGTGATTCCGCATTAA
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