Gcaud8395.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8395.t2
Unique NameGcaud8395.t2
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length524
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1597_length_9575_cov_4.430620contigNODE_1597_length_9575_cov_4.430620:1138..2709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LBV9
PFAMsPPR
Max annot lvl2759|Eukaryota
Evalue1.53e-22
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Descriptionendonuclease activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8395Gcaud8395Gracilaria caudata M_176_S67 malegeneNODE_1597_length_9575_cov_4.430620 1138..2820 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8395.t2.stop1Gcaud8395.t2.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1597_length_9575_cov_4.430620 1138..1140 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8395.t2.CDS1Gcaud8395.t2.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1597_length_9575_cov_4.430620 1138..2709 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8395.t2.exon1Gcaud8395.t2.exon1Gracilaria caudata M_176_S67 maleexonNODE_1597_length_9575_cov_4.430620 1138..2709 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8395.t2.start1Gcaud8395.t2.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1597_length_9575_cov_4.430620 2707..2709 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8395.t2Gcaud8395.t2Gracilaria caudata M_176_S67 malepolypeptideNODE_1597_length_9575_cov_4.430620 1138..2709 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8395.t2 ID=Gcaud8395.t2|Name=Gcaud8395.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=524bp
MHYHQIEMGPFSYSVLLKSHGRANNIVAVKSALAEIHQRELRMDSVLLNS
AVDALVRCNDLGTAIRMLSEEANKPLLDVTSYNTIIKGFARLGRVSDAFR
VVRAMKSAQCSPNHITRNTLLSTCVEAGEFDRAWGLIDDDSFDLVPTSSP
TAPGPGSSSTPQQRNNTKHHASSSMQLTIAITSLMSGLADAGRVDEALQL
FTRMKENNIQPSAITYASLISALFRRNESDRARDLFQSFIDDDLISLEVC
NAYMSGLCNSRQEQNVQVAAAVLNDMLSRQLPVFPDIHSFNCLMDGWVGI
SNFEQAEHILRLMQTNKVRPTTASYTILMKGYSDAGQYGGAKRTFRKLMR
RSLRPDRIALNAFIMVCVRSGDIIAAERVIEHMEQRKGATSPNAQSYSPL
IASYMRHGNFEEGWQVYVRMRSQGIPLNEYLVKYMTVQLSQSNRKAGPHQ
VQNCAQLLKDGLTDGINLKLLRKCRKKMLLELKNKRSQEALNKLADEPEF
RPASEQIFDRHGWNRIDSGWRVF*
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spliced messenger RNA

>Gcaud8395.t2 ID=Gcaud8395.t2|Name=Gcaud8395.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1572bp|location=Sequence derived from alignment at NODE_1597_length_9575_cov_4.430620:1138..2709- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTACCATCAGATTGAAATGGGCCCCTTTTCGTACTCCGTCTTACT
AAAGTCACACGGTCGCGCAAACAATATCGTCGCCGTCAAGTCTGCGCTCG
CCGAAATCCATCAGAGAGAGCTCAGAATGGATTCCGTGCTGCTTAATTCC
GCTGTCGATGCCCTTGTTCGATGCAATGACCTCGGCACCGCAATACGTAT
GCTTTCGGAGGAGGCCAACAAGCCGTTGCTTGACGTGACTAGCTACAATA
CCATTATCAAAGGGTTTGCGCGTCTTGGGCGCGTTTCAGATGCTTTCAGA
GTGGTGCGTGCGATGAAAAGCGCCCAGTGCTCTCCGAATCATATCACCAG
AAACACTCTACTTTCCACTTGTGTTGAGGCTGGTGAATTTGACCGCGCGT
GGGGTCTCATCGACGACGACAGCTTTGACTTGGTGCCCACCAGTTCTCCT
ACGGCACCTGGACCTGGTTCCTCATCCACTCCTCAGCAGCGAAATAATAC
AAAACATCATGCTTCATCATCGATGCAGCTGACTATAGCAATAACGTCGT
TAATGTCTGGGCTTGCAGATGCCGGTAGAGTTGATGAGGCACTCCAGCTG
TTCACCCGAATGAAGGAAAACAATATCCAACCCTCTGCTATTACGTACGC
ATCTCTCATTTCGGCATTGTTCCGTCGTAACGAAAGCGATCGCGCTCGAG
ATCTCTTTCAGTCATTCATTGATGACGACCTCATCTCACTCGAAGTTTGT
AACGCGTACATGTCCGGCCTCTGCAACTCCAGACAAGAGCAGAATGTGCA
AGTGGCAGCCGCAGTTCTGAATGATATGCTTTCCAGACAACTCCCGGTCT
TTCCAGACATTCATAGCTTCAATTGTCTGATGGACGGTTGGGTTGGCATC
AGCAATTTTGAGCAAGCAGAGCATATCTTGAGGCTCATGCAAACGAACAA
GGTTCGTCCCACGACTGCTTCGTACACAATTTTAATGAAGGGCTACAGCG
ATGCGGGCCAGTATGGAGGTGCAAAGCGGACATTTCGTAAGCTTATGCGA
CGGAGCTTACGACCGGACCGCATTGCGCTAAACGCGTTCATAATGGTTTG
CGTGCGTTCTGGTGACATTATAGCAGCGGAGCGCGTTATTGAACACATGG
AACAACGGAAAGGCGCAACCAGTCCAAATGCACAGAGCTACAGCCCTCTG
ATAGCTTCATATATGCGTCACGGAAACTTCGAGGAGGGTTGGCAGGTTTA
CGTCCGAATGCGTTCACAAGGAATTCCGTTGAACGAGTACCTAGTTAAGT
ACATGACGGTTCAGCTATCCCAAAGCAATAGAAAAGCAGGTCCACACCAA
GTGCAAAACTGCGCACAGCTTCTGAAAGACGGATTAACTGACGGAATTAA
CCTTAAACTGCTCCGAAAGTGTCGAAAGAAGATGTTGCTTGAGCTCAAGA
ACAAACGAAGCCAAGAAGCACTCAATAAGTTGGCCGATGAACCAGAATTC
CGACCCGCTAGTGAGCAAATCTTTGATAGACACGGCTGGAATCGGATTGA
TTCTGGGTGGCGTGTGTTTTAA
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protein sequence of Gcaud8395.t2

>Gcaud8395.t2 ID=Gcaud8395.t2|Name=Gcaud8395.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=524bp
MHYHQIEMGPFSYSVLLKSHGRANNIVAVKSALAEIHQRELRMDSVLLNS
AVDALVRCNDLGTAIRMLSEEANKPLLDVTSYNTIIKGFARLGRVSDAFR
VVRAMKSAQCSPNHITRNTLLSTCVEAGEFDRAWGLIDDDSFDLVPTSSP
TAPGPGSSSTPQQRNNTKHHASSSMQLTIAITSLMSGLADAGRVDEALQL
FTRMKENNIQPSAITYASLISALFRRNESDRARDLFQSFIDDDLISLEVC
NAYMSGLCNSRQEQNVQVAAAVLNDMLSRQLPVFPDIHSFNCLMDGWVGI
SNFEQAEHILRLMQTNKVRPTTASYTILMKGYSDAGQYGGAKRTFRKLMR
RSLRPDRIALNAFIMVCVRSGDIIAAERVIEHMEQRKGATSPNAQSYSPL
IASYMRHGNFEEGWQVYVRMRSQGIPLNEYLVKYMTVQLSQSNRKAGPHQ
VQNCAQLLKDGLTDGINLKLLRKCRKKMLLELKNKRSQEALNKLADEPEF
RPASEQIFDRHGWNRIDSGWRVF*
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mRNA from alignment at NODE_1597_length_9575_cov_4.430620:1138..2709-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8395.t2 ID=Gcaud8395.t2|Name=Gcaud8395.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1572bp|location=Sequence derived from alignment at NODE_1597_length_9575_cov_4.430620:1138..2709- (Gracilaria caudata M_176_S67 male)
ATGCATTACCATCAGATTGAAATGGGCCCCTTTTCGTACTCCGTCTTACT
AAAGTCACACGGTCGCGCAAACAATATCGTCGCCGTCAAGTCTGCGCTCG
CCGAAATCCATCAGAGAGAGCTCAGAATGGATTCCGTGCTGCTTAATTCC
GCTGTCGATGCCCTTGTTCGATGCAATGACCTCGGCACCGCAATACGTAT
GCTTTCGGAGGAGGCCAACAAGCCGTTGCTTGACGTGACTAGCTACAATA
CCATTATCAAAGGGTTTGCGCGTCTTGGGCGCGTTTCAGATGCTTTCAGA
GTGGTGCGTGCGATGAAAAGCGCCCAGTGCTCTCCGAATCATATCACCAG
AAACACTCTACTTTCCACTTGTGTTGAGGCTGGTGAATTTGACCGCGCGT
GGGGTCTCATCGACGACGACAGCTTTGACTTGGTGCCCACCAGTTCTCCT
ACGGCACCTGGACCTGGTTCCTCATCCACTCCTCAGCAGCGAAATAATAC
AAAACATCATGCTTCATCATCGATGCAGCTGACTATAGCAATAACGTCGT
TAATGTCTGGGCTTGCAGATGCCGGTAGAGTTGATGAGGCACTCCAGCTG
TTCACCCGAATGAAGGAAAACAATATCCAACCCTCTGCTATTACGTACGC
ATCTCTCATTTCGGCATTGTTCCGTCGTAACGAAAGCGATCGCGCTCGAG
ATCTCTTTCAGTCATTCATTGATGACGACCTCATCTCACTCGAAGTTTGT
AACGCGTACATGTCCGGCCTCTGCAACTCCAGACAAGAGCAGAATGTGCA
AGTGGCAGCCGCAGTTCTGAATGATATGCTTTCCAGACAACTCCCGGTCT
TTCCAGACATTCATAGCTTCAATTGTCTGATGGACGGTTGGGTTGGCATC
AGCAATTTTGAGCAAGCAGAGCATATCTTGAGGCTCATGCAAACGAACAA
GGTTCGTCCCACGACTGCTTCGTACACAATTTTAATGAAGGGCTACAGCG
ATGCGGGCCAGTATGGAGGTGCAAAGCGGACATTTCGTAAGCTTATGCGA
CGGAGCTTACGACCGGACCGCATTGCGCTAAACGCGTTCATAATGGTTTG
CGTGCGTTCTGGTGACATTATAGCAGCGGAGCGCGTTATTGAACACATGG
AACAACGGAAAGGCGCAACCAGTCCAAATGCACAGAGCTACAGCCCTCTG
ATAGCTTCATATATGCGTCACGGAAACTTCGAGGAGGGTTGGCAGGTTTA
CGTCCGAATGCGTTCACAAGGAATTCCGTTGAACGAGTACCTAGTTAAGT
ACATGACGGTTCAGCTATCCCAAAGCAATAGAAAAGCAGGTCCACACCAA
GTGCAAAACTGCGCACAGCTTCTGAAAGACGGATTAACTGACGGAATTAA
CCTTAAACTGCTCCGAAAGTGTCGAAAGAAGATGTTGCTTGAGCTCAAGA
ACAAACGAAGCCAAGAAGCACTCAATAAGTTGGCCGATGAACCAGAATTC
CGACCCGCTAGTGAGCAAATCTTTGATAGACACGGCTGGAATCGGATTGA
TTCTGGGTGGCGTGTGTTTTAA
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Coding sequence (CDS) from alignment at NODE_1597_length_9575_cov_4.430620:1138..2709-

>Gcaud8395.t2 ID=Gcaud8395.t2|Name=Gcaud8395.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1572bp|location=Sequence derived from alignment at NODE_1597_length_9575_cov_4.430620:1138..2709- (Gracilaria caudata M_176_S67 male)
ATGCATTACCATCAGATTGAAATGGGCCCCTTTTCGTACTCCGTCTTACT
AAAGTCACACGGTCGCGCAAACAATATCGTCGCCGTCAAGTCTGCGCTCG
CCGAAATCCATCAGAGAGAGCTCAGAATGGATTCCGTGCTGCTTAATTCC
GCTGTCGATGCCCTTGTTCGATGCAATGACCTCGGCACCGCAATACGTAT
GCTTTCGGAGGAGGCCAACAAGCCGTTGCTTGACGTGACTAGCTACAATA
CCATTATCAAAGGGTTTGCGCGTCTTGGGCGCGTTTCAGATGCTTTCAGA
GTGGTGCGTGCGATGAAAAGCGCCCAGTGCTCTCCGAATCATATCACCAG
AAACACTCTACTTTCCACTTGTGTTGAGGCTGGTGAATTTGACCGCGCGT
GGGGTCTCATCGACGACGACAGCTTTGACTTGGTGCCCACCAGTTCTCCT
ACGGCACCTGGACCTGGTTCCTCATCCACTCCTCAGCAGCGAAATAATAC
AAAACATCATGCTTCATCATCGATGCAGCTGACTATAGCAATAACGTCGT
TAATGTCTGGGCTTGCAGATGCCGGTAGAGTTGATGAGGCACTCCAGCTG
TTCACCCGAATGAAGGAAAACAATATCCAACCCTCTGCTATTACGTACGC
ATCTCTCATTTCGGCATTGTTCCGTCGTAACGAAAGCGATCGCGCTCGAG
ATCTCTTTCAGTCATTCATTGATGACGACCTCATCTCACTCGAAGTTTGT
AACGCGTACATGTCCGGCCTCTGCAACTCCAGACAAGAGCAGAATGTGCA
AGTGGCAGCCGCAGTTCTGAATGATATGCTTTCCAGACAACTCCCGGTCT
TTCCAGACATTCATAGCTTCAATTGTCTGATGGACGGTTGGGTTGGCATC
AGCAATTTTGAGCAAGCAGAGCATATCTTGAGGCTCATGCAAACGAACAA
GGTTCGTCCCACGACTGCTTCGTACACAATTTTAATGAAGGGCTACAGCG
ATGCGGGCCAGTATGGAGGTGCAAAGCGGACATTTCGTAAGCTTATGCGA
CGGAGCTTACGACCGGACCGCATTGCGCTAAACGCGTTCATAATGGTTTG
CGTGCGTTCTGGTGACATTATAGCAGCGGAGCGCGTTATTGAACACATGG
AACAACGGAAAGGCGCAACCAGTCCAAATGCACAGAGCTACAGCCCTCTG
ATAGCTTCATATATGCGTCACGGAAACTTCGAGGAGGGTTGGCAGGTTTA
CGTCCGAATGCGTTCACAAGGAATTCCGTTGAACGAGTACCTAGTTAAGT
ACATGACGGTTCAGCTATCCCAAAGCAATAGAAAAGCAGGTCCACACCAA
GTGCAAAACTGCGCACAGCTTCTGAAAGACGGATTAACTGACGGAATTAA
CCTTAAACTGCTCCGAAAGTGTCGAAAGAAGATGTTGCTTGAGCTCAAGA
ACAAACGAAGCCAAGAAGCACTCAATAAGTTGGCCGATGAACCAGAATTC
CGACCCGCTAGTGAGCAAATCTTTGATAGACACGGCTGGAATCGGATTGA
TTCTGGGTGGCGTGTGTTTTAA
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