Gcaud8395.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8395.t1
Unique Name	Gcaud8395.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	561

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1597_length_9575_cov_4.430620	contig	NODE_1597_length_9575_cov_4.430620:1138..2820 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LBV9
PFAMs	PPR
Max annot lvl	2759\|Eukaryota
Evalue	2.18e-23
EggNOG OGs	KOG4197@1\|root,KOG4197@2759\|Eukaryota
Description	endonuclease activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8395	Gcaud8395	Gracilaria caudata M_176_S67 male	gene	NODE_1597_length_9575_cov_4.430620 1138..2820 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8395.t1.stop1	Gcaud8395.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1597_length_9575_cov_4.430620 1138..1140 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8395.t1.CDS1	Gcaud8395.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1597_length_9575_cov_4.430620 1138..2820 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8395.t1.exon1	Gcaud8395.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1597_length_9575_cov_4.430620 1138..2820 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8395.t1.start1	Gcaud8395.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1597_length_9575_cov_4.430620 2818..2820 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8395.t1	Gcaud8395.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1597_length_9575_cov_4.430620 1138..2820 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1597_length_9575_cov_4.430620:1138..2820-
coding sequence from alignment at NODE_1597_length_9575_cov_4.430620:1138..2820-

mRNA sequence

>Gcaud8395.t1 ID=Gcaud8395.t1|Name=Gcaud8395.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=561bp
MWQVGNAVTPDEKLIVSLANTAVNRSSYRVSLKLFHLMHYHQIEMGPFSY
SVLLKSHGRANNIVAVKSALAEIHQRELRMDSVLLNSAVDALVRCNDLGT
AIRMLSEEANKPLLDVTSYNTIIKGFARLGRVSDAFRVVRAMKSAQCSPN
HITRNTLLSTCVEAGEFDRAWGLIDDDSFDLVPTSSPTAPGPGSSSTPQQ
RNNTKHHASSSMQLTIAITSLMSGLADAGRVDEALQLFTRMKENNIQPSA
ITYASLISALFRRNESDRARDLFQSFIDDDLISLEVCNAYMSGLCNSRQE
QNVQVAAAVLNDMLSRQLPVFPDIHSFNCLMDGWVGISNFEQAEHILRLM
QTNKVRPTTASYTILMKGYSDAGQYGGAKRTFRKLMRRSLRPDRIALNAF
IMVCVRSGDIIAAERVIEHMEQRKGATSPNAQSYSPLIASYMRHGNFEEG
WQVYVRMRSQGIPLNEYLVKYMTVQLSQSNRKAGPHQVQNCAQLLKDGLT
DGINLKLLRKCRKKMLLELKNKRSQEALNKLADEPEFRPASEQIFDRHGW
NRIDSGWRVF*

spliced messenger RNA

>Gcaud8395.t1 ID=Gcaud8395.t1|Name=Gcaud8395.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1683bp|location=Sequence derived from alignment at NODE_1597_length_9575_cov_4.430620:1138..2820- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCAGGTTGGAAATGCCGTCACCCCAGACGAGAAGCTCATCGTCAG
TCTTGCCAACACTGCTGTGAATCGAAGTAGTTACCGAGTCTCTCTCAAAC
TATTTCATCTCATGCATTACCATCAGATTGAAATGGGCCCCTTTTCGTAC
TCCGTCTTACTAAAGTCACACGGTCGCGCAAACAATATCGTCGCCGTCAA
GTCTGCGCTCGCCGAAATCCATCAGAGAGAGCTCAGAATGGATTCCGTGC
TGCTTAATTCCGCTGTCGATGCCCTTGTTCGATGCAATGACCTCGGCACC
GCAATACGTATGCTTTCGGAGGAGGCCAACAAGCCGTTGCTTGACGTGAC
TAGCTACAATACCATTATCAAAGGGTTTGCGCGTCTTGGGCGCGTTTCAG
ATGCTTTCAGAGTGGTGCGTGCGATGAAAAGCGCCCAGTGCTCTCCGAAT
CATATCACCAGAAACACTCTACTTTCCACTTGTGTTGAGGCTGGTGAATT
TGACCGCGCGTGGGGTCTCATCGACGACGACAGCTTTGACTTGGTGCCCA
CCAGTTCTCCTACGGCACCTGGACCTGGTTCCTCATCCACTCCTCAGCAG
CGAAATAATACAAAACATCATGCTTCATCATCGATGCAGCTGACTATAGC
AATAACGTCGTTAATGTCTGGGCTTGCAGATGCCGGTAGAGTTGATGAGG
CACTCCAGCTGTTCACCCGAATGAAGGAAAACAATATCCAACCCTCTGCT
ATTACGTACGCATCTCTCATTTCGGCATTGTTCCGTCGTAACGAAAGCGA
TCGCGCTCGAGATCTCTTTCAGTCATTCATTGATGACGACCTCATCTCAC
TCGAAGTTTGTAACGCGTACATGTCCGGCCTCTGCAACTCCAGACAAGAG
CAGAATGTGCAAGTGGCAGCCGCAGTTCTGAATGATATGCTTTCCAGACA
ACTCCCGGTCTTTCCAGACATTCATAGCTTCAATTGTCTGATGGACGGTT
GGGTTGGCATCAGCAATTTTGAGCAAGCAGAGCATATCTTGAGGCTCATG
CAAACGAACAAGGTTCGTCCCACGACTGCTTCGTACACAATTTTAATGAA
GGGCTACAGCGATGCGGGCCAGTATGGAGGTGCAAAGCGGACATTTCGTA
AGCTTATGCGACGGAGCTTACGACCGGACCGCATTGCGCTAAACGCGTTC
ATAATGGTTTGCGTGCGTTCTGGTGACATTATAGCAGCGGAGCGCGTTAT
TGAACACATGGAACAACGGAAAGGCGCAACCAGTCCAAATGCACAGAGCT
ACAGCCCTCTGATAGCTTCATATATGCGTCACGGAAACTTCGAGGAGGGT
TGGCAGGTTTACGTCCGAATGCGTTCACAAGGAATTCCGTTGAACGAGTA
CCTAGTTAAGTACATGACGGTTCAGCTATCCCAAAGCAATAGAAAAGCAG
GTCCACACCAAGTGCAAAACTGCGCACAGCTTCTGAAAGACGGATTAACT
GACGGAATTAACCTTAAACTGCTCCGAAAGTGTCGAAAGAAGATGTTGCT
TGAGCTCAAGAACAAACGAAGCCAAGAAGCACTCAATAAGTTGGCCGATG
AACCAGAATTCCGACCCGCTAGTGAGCAAATCTTTGATAGACACGGCTGG
AATCGGATTGATTCTGGGTGGCGTGTGTTTTAA

protein sequence of Gcaud8395.t1

>Gcaud8395.t1 ID=Gcaud8395.t1|Name=Gcaud8395.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=561bp
MWQVGNAVTPDEKLIVSLANTAVNRSSYRVSLKLFHLMHYHQIEMGPFSY
SVLLKSHGRANNIVAVKSALAEIHQRELRMDSVLLNSAVDALVRCNDLGT
AIRMLSEEANKPLLDVTSYNTIIKGFARLGRVSDAFRVVRAMKSAQCSPN
HITRNTLLSTCVEAGEFDRAWGLIDDDSFDLVPTSSPTAPGPGSSSTPQQ
RNNTKHHASSSMQLTIAITSLMSGLADAGRVDEALQLFTRMKENNIQPSA
ITYASLISALFRRNESDRARDLFQSFIDDDLISLEVCNAYMSGLCNSRQE
QNVQVAAAVLNDMLSRQLPVFPDIHSFNCLMDGWVGISNFEQAEHILRLM
QTNKVRPTTASYTILMKGYSDAGQYGGAKRTFRKLMRRSLRPDRIALNAF
IMVCVRSGDIIAAERVIEHMEQRKGATSPNAQSYSPLIASYMRHGNFEEG
WQVYVRMRSQGIPLNEYLVKYMTVQLSQSNRKAGPHQVQNCAQLLKDGLT
DGINLKLLRKCRKKMLLELKNKRSQEALNKLADEPEFRPASEQIFDRHGW
NRIDSGWRVF*

mRNA from alignment at NODE_1597_length_9575_cov_4.430620:1138..2820-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8395.t1 ID=Gcaud8395.t1|Name=Gcaud8395.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1683bp|location=Sequence derived from alignment at NODE_1597_length_9575_cov_4.430620:1138..2820- (Gracilaria caudata M_176_S67 male)
ATGTGGCAGGTTGGAAATGCCGTCACCCCAGACGAGAAGCTCATCGTCAG
TCTTGCCAACACTGCTGTGAATCGAAGTAGTTACCGAGTCTCTCTCAAAC
TATTTCATCTCATGCATTACCATCAGATTGAAATGGGCCCCTTTTCGTAC
TCCGTCTTACTAAAGTCACACGGTCGCGCAAACAATATCGTCGCCGTCAA
GTCTGCGCTCGCCGAAATCCATCAGAGAGAGCTCAGAATGGATTCCGTGC
TGCTTAATTCCGCTGTCGATGCCCTTGTTCGATGCAATGACCTCGGCACC
GCAATACGTATGCTTTCGGAGGAGGCCAACAAGCCGTTGCTTGACGTGAC
TAGCTACAATACCATTATCAAAGGGTTTGCGCGTCTTGGGCGCGTTTCAG
ATGCTTTCAGAGTGGTGCGTGCGATGAAAAGCGCCCAGTGCTCTCCGAAT
CATATCACCAGAAACACTCTACTTTCCACTTGTGTTGAGGCTGGTGAATT
TGACCGCGCGTGGGGTCTCATCGACGACGACAGCTTTGACTTGGTGCCCA
CCAGTTCTCCTACGGCACCTGGACCTGGTTCCTCATCCACTCCTCAGCAG
CGAAATAATACAAAACATCATGCTTCATCATCGATGCAGCTGACTATAGC
AATAACGTCGTTAATGTCTGGGCTTGCAGATGCCGGTAGAGTTGATGAGG
CACTCCAGCTGTTCACCCGAATGAAGGAAAACAATATCCAACCCTCTGCT
ATTACGTACGCATCTCTCATTTCGGCATTGTTCCGTCGTAACGAAAGCGA
TCGCGCTCGAGATCTCTTTCAGTCATTCATTGATGACGACCTCATCTCAC
TCGAAGTTTGTAACGCGTACATGTCCGGCCTCTGCAACTCCAGACAAGAG
CAGAATGTGCAAGTGGCAGCCGCAGTTCTGAATGATATGCTTTCCAGACA
ACTCCCGGTCTTTCCAGACATTCATAGCTTCAATTGTCTGATGGACGGTT
GGGTTGGCATCAGCAATTTTGAGCAAGCAGAGCATATCTTGAGGCTCATG
CAAACGAACAAGGTTCGTCCCACGACTGCTTCGTACACAATTTTAATGAA
GGGCTACAGCGATGCGGGCCAGTATGGAGGTGCAAAGCGGACATTTCGTA
AGCTTATGCGACGGAGCTTACGACCGGACCGCATTGCGCTAAACGCGTTC
ATAATGGTTTGCGTGCGTTCTGGTGACATTATAGCAGCGGAGCGCGTTAT
TGAACACATGGAACAACGGAAAGGCGCAACCAGTCCAAATGCACAGAGCT
ACAGCCCTCTGATAGCTTCATATATGCGTCACGGAAACTTCGAGGAGGGT
TGGCAGGTTTACGTCCGAATGCGTTCACAAGGAATTCCGTTGAACGAGTA
CCTAGTTAAGTACATGACGGTTCAGCTATCCCAAAGCAATAGAAAAGCAG
GTCCACACCAAGTGCAAAACTGCGCACAGCTTCTGAAAGACGGATTAACT
GACGGAATTAACCTTAAACTGCTCCGAAAGTGTCGAAAGAAGATGTTGCT
TGAGCTCAAGAACAAACGAAGCCAAGAAGCACTCAATAAGTTGGCCGATG
AACCAGAATTCCGACCCGCTAGTGAGCAAATCTTTGATAGACACGGCTGG
AATCGGATTGATTCTGGGTGGCGTGTGTTTTAA

Coding sequence (CDS) from alignment at NODE_1597_length_9575_cov_4.430620:1138..2820-

>Gcaud8395.t1 ID=Gcaud8395.t1|Name=Gcaud8395.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1683bp|location=Sequence derived from alignment at NODE_1597_length_9575_cov_4.430620:1138..2820- (Gracilaria caudata M_176_S67 male)
ATGTGGCAGGTTGGAAATGCCGTCACCCCAGACGAGAAGCTCATCGTCAG
TCTTGCCAACACTGCTGTGAATCGAAGTAGTTACCGAGTCTCTCTCAAAC
TATTTCATCTCATGCATTACCATCAGATTGAAATGGGCCCCTTTTCGTAC
TCCGTCTTACTAAAGTCACACGGTCGCGCAAACAATATCGTCGCCGTCAA
GTCTGCGCTCGCCGAAATCCATCAGAGAGAGCTCAGAATGGATTCCGTGC
TGCTTAATTCCGCTGTCGATGCCCTTGTTCGATGCAATGACCTCGGCACC
GCAATACGTATGCTTTCGGAGGAGGCCAACAAGCCGTTGCTTGACGTGAC
TAGCTACAATACCATTATCAAAGGGTTTGCGCGTCTTGGGCGCGTTTCAG
ATGCTTTCAGAGTGGTGCGTGCGATGAAAAGCGCCCAGTGCTCTCCGAAT
CATATCACCAGAAACACTCTACTTTCCACTTGTGTTGAGGCTGGTGAATT
TGACCGCGCGTGGGGTCTCATCGACGACGACAGCTTTGACTTGGTGCCCA
CCAGTTCTCCTACGGCACCTGGACCTGGTTCCTCATCCACTCCTCAGCAG
CGAAATAATACAAAACATCATGCTTCATCATCGATGCAGCTGACTATAGC
AATAACGTCGTTAATGTCTGGGCTTGCAGATGCCGGTAGAGTTGATGAGG
CACTCCAGCTGTTCACCCGAATGAAGGAAAACAATATCCAACCCTCTGCT
ATTACGTACGCATCTCTCATTTCGGCATTGTTCCGTCGTAACGAAAGCGA
TCGCGCTCGAGATCTCTTTCAGTCATTCATTGATGACGACCTCATCTCAC
TCGAAGTTTGTAACGCGTACATGTCCGGCCTCTGCAACTCCAGACAAGAG
CAGAATGTGCAAGTGGCAGCCGCAGTTCTGAATGATATGCTTTCCAGACA
ACTCCCGGTCTTTCCAGACATTCATAGCTTCAATTGTCTGATGGACGGTT
GGGTTGGCATCAGCAATTTTGAGCAAGCAGAGCATATCTTGAGGCTCATG
CAAACGAACAAGGTTCGTCCCACGACTGCTTCGTACACAATTTTAATGAA
GGGCTACAGCGATGCGGGCCAGTATGGAGGTGCAAAGCGGACATTTCGTA
AGCTTATGCGACGGAGCTTACGACCGGACCGCATTGCGCTAAACGCGTTC
ATAATGGTTTGCGTGCGTTCTGGTGACATTATAGCAGCGGAGCGCGTTAT
TGAACACATGGAACAACGGAAAGGCGCAACCAGTCCAAATGCACAGAGCT
ACAGCCCTCTGATAGCTTCATATATGCGTCACGGAAACTTCGAGGAGGGT
TGGCAGGTTTACGTCCGAATGCGTTCACAAGGAATTCCGTTGAACGAGTA
CCTAGTTAAGTACATGACGGTTCAGCTATCCCAAAGCAATAGAAAAGCAG
GTCCACACCAAGTGCAAAACTGCGCACAGCTTCTGAAAGACGGATTAACT
GACGGAATTAACCTTAAACTGCTCCGAAAGTGTCGAAAGAAGATGTTGCT
TGAGCTCAAGAACAAACGAAGCCAAGAAGCACTCAATAAGTTGGCCGATG
AACCAGAATTCCGACCCGCTAGTGAGCAAATCTTTGATAGACACGGCTGG
AATCGGATTGATTCTGGGTGGCGTGTGTTTTAA