Gcaud8394.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8394.t1
Unique Name	Gcaud8394.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	236

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1597_length_9575_cov_4.430620	contig	NODE_1597_length_9575_cov_4.430620:269..1105 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7FMY0
Max annot lvl	2759\|Eukaryota
Evalue	1.96e-12
EggNOG OGs	2EM9Y@1\|root,2SQZZ@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8394	Gcaud8394	Gracilaria caudata M_176_S67 male	gene	NODE_1597_length_9575_cov_4.430620 269..1105 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8394.t1	Gcaud8394.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1597_length_9575_cov_4.430620 269..1105 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8394.t1.CDS1	Gcaud8394.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1597_length_9575_cov_4.430620 269..284 +
Gcaud8394.t1.CDS2	Gcaud8394.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1597_length_9575_cov_4.430620 414..1105 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8394.t1.exon1	Gcaud8394.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1597_length_9575_cov_4.430620 269..284 +
Gcaud8394.t1.exon2	Gcaud8394.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1597_length_9575_cov_4.430620 414..1105 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8394.t1.intron1	Gcaud8394.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1597_length_9575_cov_4.430620 285..413 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8394.t1.stop1	Gcaud8394.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1597_length_9575_cov_4.430620 1103..1105 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1597_length_9575_cov_4.430620:269..1105+
coding sequence from alignment at NODE_1597_length_9575_cov_4.430620:269..1105+

mRNA sequence

>Gcaud8394.t1 ID=Gcaud8394.t1|Name=Gcaud8394.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=236bp
EYYSTAYVFVRPRQTPSIASRIVCVQQKDAPSPKSGLSDMKRTLFSLLEG
LNRGIDIDPDSETMTSEEADVEEAIEALEDYYPPQFPTRDPRLPGRWRLV
YTSSAITRYFGGVTGLQRLLPNAAVGEITQVIEGEDGTSTFLENVTFELP
LIGNEVSLDIQVQGRVRASNEERQIWEPENVKCGFLSWFADNWKTFRAFQ
VADITYLDDELRITRGQTGSVAVFQRIAEDNQGET*

spliced messenger RNA

>Gcaud8394.t1 ID=Gcaud8394.t1|Name=Gcaud8394.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=708bp|location=Sequence derived from alignment at NODE_1597_length_9575_cov_4.430620:269..1105+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
GAATACTATTCCACAGCATACGTTTTCGTTCGACCTCGTCAAACGCCGTC
AATTGCATCACGAATCGTGTGCGTCCAGCAGAAAGACGCACCAAGTCCGA
AATCAGGTCTCTCGGACATGAAGCGAACGCTTTTCTCATTGTTAGAAGGA
TTAAACCGAGGAATAGACATTGATCCAGACTCTGAGACCATGACTTCCGA
AGAAGCTGACGTGGAGGAAGCAATCGAAGCGCTTGAGGACTACTACCCAC
CACAGTTTCCGACGAGAGACCCGAGACTGCCTGGCCGTTGGCGCCTAGTA
TATACGTCCAGCGCCATCACGAGATACTTTGGTGGCGTGACTGGCCTTCA
GCGCTTATTACCAAATGCCGCTGTCGGCGAAATAACTCAAGTTATCGAAG
GTGAGGATGGAACGAGTACATTTTTAGAAAACGTCACCTTCGAACTTCCA
CTCATTGGAAACGAAGTTTCCTTGGATATACAAGTACAAGGGCGAGTGCG
AGCGTCGAACGAAGAGCGTCAAATCTGGGAACCGGAAAATGTCAAGTGTG
GCTTCCTTAGCTGGTTTGCGGACAACTGGAAAACCTTTCGCGCTTTTCAG
GTTGCCGACATCACTTATCTCGATGATGAATTGCGAATTACAAGGGGCCA
AACAGGAAGTGTTGCTGTCTTCCAAAGAATAGCGGAGGATAATCAAGGAG
AGACATAG

protein sequence of Gcaud8394.t1

>Gcaud8394.t1 ID=Gcaud8394.t1|Name=Gcaud8394.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=236bp
EYYSTAYVFVRPRQTPSIASRIVCVQQKDAPSPKSGLSDMKRTLFSLLEG
LNRGIDIDPDSETMTSEEADVEEAIEALEDYYPPQFPTRDPRLPGRWRLV
YTSSAITRYFGGVTGLQRLLPNAAVGEITQVIEGEDGTSTFLENVTFELP
LIGNEVSLDIQVQGRVRASNEERQIWEPENVKCGFLSWFADNWKTFRAFQ
VADITYLDDELRITRGQTGSVAVFQRIAEDNQGET*

mRNA from alignment at NODE_1597_length_9575_cov_4.430620:269..1105+

Legend: polypeptideCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8394.t1 ID=Gcaud8394.t1|Name=Gcaud8394.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=837bp|location=Sequence derived from alignment at NODE_1597_length_9575_cov_4.430620:269..1105+ (Gracilaria caudata M_176_S67 male)
GAATACTATTCCACAGGTGCGGAAGCAGAACTTTTGTCATTGTCCTTCAT
GGTCTTGTTTTCAACCATGACGGGGTTTGTTCCAACTTTTCCTCATCTTC
AGCCCCAACAGACAATCCCAATAACAAAATTTGTTCCGACTAAAGCATAC
GTTTTCGTTCGACCTCGTCAAACGCCGTCAATTGCATCACGAATCGTGTG
CGTCCAGCAGAAAGACGCACCAAGTCCGAAATCAGGTCTCTCGGACATGA
AGCGAACGCTTTTCTCATTGTTAGAAGGATTAAACCGAGGAATAGACATT
GATCCAGACTCTGAGACCATGACTTCCGAAGAAGCTGACGTGGAGGAAGC
AATCGAAGCGCTTGAGGACTACTACCCACCACAGTTTCCGACGAGAGACC
CGAGACTGCCTGGCCGTTGGCGCCTAGTATATACGTCCAGCGCCATCACG
AGATACTTTGGTGGCGTGACTGGCCTTCAGCGCTTATTACCAAATGCCGC
TGTCGGCGAAATAACTCAAGTTATCGAAGGTGAGGATGGAACGAGTACAT
TTTTAGAAAACGTCACCTTCGAACTTCCACTCATTGGAAACGAAGTTTCC
TTGGATATACAAGTACAAGGGCGAGTGCGAGCGTCGAACGAAGAGCGTCA
AATCTGGGAACCGGAAAATGTCAAGTGTGGCTTCCTTAGCTGGTTTGCGG
ACAACTGGAAAACCTTTCGCGCTTTTCAGGTTGCCGACATCACTTATCTC
GATGATGAATTGCGAATTACAAGGGGCCAAACAGGAAGTGTTGCTGTCTT
CCAAAGAATAGCGGAGGATAATCAAGGAGAGACATAG

Coding sequence (CDS) from alignment at NODE_1597_length_9575_cov_4.430620:269..1105+

>Gcaud8394.t1 ID=Gcaud8394.t1|Name=Gcaud8394.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=708bp|location=Sequence derived from alignment at NODE_1597_length_9575_cov_4.430620:269..1105+ (Gracilaria caudata M_176_S67 male)
GAATACTATTCCACAGCATACGTTTTCGTTCGACCTCGTCAAACGCCGTC
AATTGCATCACGAATCGTGTGCGTCCAGCAGAAAGACGCACCAAGTCCGA
AATCAGGTCTCTCGGACATGAAGCGAACGCTTTTCTCATTGTTAGAAGGA
TTAAACCGAGGAATAGACATTGATCCAGACTCTGAGACCATGACTTCCGA
AGAAGCTGACGTGGAGGAAGCAATCGAAGCGCTTGAGGACTACTACCCAC
CACAGTTTCCGACGAGAGACCCGAGACTGCCTGGCCGTTGGCGCCTAGTA
TATACGTCCAGCGCCATCACGAGATACTTTGGTGGCGTGACTGGCCTTCA
GCGCTTATTACCAAATGCCGCTGTCGGCGAAATAACTCAAGTTATCGAAG
GTGAGGATGGAACGAGTACATTTTTAGAAAACGTCACCTTCGAACTTCCA
CTCATTGGAAACGAAGTTTCCTTGGATATACAAGTACAAGGGCGAGTGCG
AGCGTCGAACGAAGAGCGTCAAATCTGGGAACCGGAAAATGTCAAGTGTG
GCTTCCTTAGCTGGTTTGCGGACAACTGGAAAACCTTTCGCGCTTTTCAG
GTTGCCGACATCACTTATCTCGATGATGAATTGCGAATTACAAGGGGCCA
AACAGGAAGTGTTGCTGTCTTCCAAAGAATAGCGGAGGATAATCAAGGAG
AGACATAG