Gcaud8390.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8390.t1
Unique NameGcaud8390.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length152
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_406_length_26511_cov_4.568963contigNODE_406_length_26511_cov_4.568963:22120..22575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8390Gcaud8390Gracilaria caudata M_176_S67 malegeneNODE_406_length_26511_cov_4.568963 22120..22575 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8390.t1.stop1Gcaud8390.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_406_length_26511_cov_4.568963 22120..22122 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8390.t1.CDS1Gcaud8390.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_406_length_26511_cov_4.568963 22120..22575 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8390.t1.exon1Gcaud8390.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_406_length_26511_cov_4.568963 22120..22575 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8390.t1.start1Gcaud8390.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_406_length_26511_cov_4.568963 22573..22575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8390.t1Gcaud8390.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_406_length_26511_cov_4.568963 22120..22575 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8390.t1 ID=Gcaud8390.t1|Name=Gcaud8390.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=152bp
MFTTTGANLSQNVRPFPENISTEVQRFMSGIDKHGVASLEAAINRENQWL
SRSTSPVRSVKKVESITKNNKHSNEKDLLLPVMDDEDMEFSEAEMESDEE
NMSSRSGHGKFVLGMETPKTLRSTKLKISLPTVLEGEESDLKKSLSSSKD
S*
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spliced messenger RNA

>Gcaud8390.t1 ID=Gcaud8390.t1|Name=Gcaud8390.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=456bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:22120..22575- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTACCACCACTGGAGCAAATCTTTCTCAAAATGTACGGCCCTTCCC
TGAGAATATAAGCACAGAAGTCCAAAGGTTTATGTCCGGAATTGACAAAC
ATGGCGTAGCTTCTCTAGAGGCGGCAATCAATCGCGAAAACCAGTGGTTG
AGTCGATCGACATCCCCTGTGCGAAGCGTCAAAAAAGTAGAGAGCATTAC
CAAGAATAACAAGCATTCAAACGAGAAGGACCTTTTGCTGCCAGTAATGG
ACGACGAGGATATGGAGTTTTCAGAAGCAGAAATGGAATCGGACGAAGAG
AACATGTCATCCAGGTCAGGTCATGGTAAATTCGTCCTCGGAATGGAAAC
ACCAAAAACCTTGCGAAGTACGAAGTTGAAAATCTCTCTCCCTACTGTGT
TGGAAGGGGAAGAATCGGATCTCAAAAAGAGCCTGTCATCTTCCAAAGAT
TCTTGA
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protein sequence of Gcaud8390.t1

>Gcaud8390.t1 ID=Gcaud8390.t1|Name=Gcaud8390.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=152bp
MFTTTGANLSQNVRPFPENISTEVQRFMSGIDKHGVASLEAAINRENQWL
SRSTSPVRSVKKVESITKNNKHSNEKDLLLPVMDDEDMEFSEAEMESDEE
NMSSRSGHGKFVLGMETPKTLRSTKLKISLPTVLEGEESDLKKSLSSSKD
S*
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mRNA from alignment at NODE_406_length_26511_cov_4.568963:22120..22575-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8390.t1 ID=Gcaud8390.t1|Name=Gcaud8390.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=456bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:22120..22575- (Gracilaria caudata M_176_S67 male)
ATGTTTACCACCACTGGAGCAAATCTTTCTCAAAATGTACGGCCCTTCCC
TGAGAATATAAGCACAGAAGTCCAAAGGTTTATGTCCGGAATTGACAAAC
ATGGCGTAGCTTCTCTAGAGGCGGCAATCAATCGCGAAAACCAGTGGTTG
AGTCGATCGACATCCCCTGTGCGAAGCGTCAAAAAAGTAGAGAGCATTAC
CAAGAATAACAAGCATTCAAACGAGAAGGACCTTTTGCTGCCAGTAATGG
ACGACGAGGATATGGAGTTTTCAGAAGCAGAAATGGAATCGGACGAAGAG
AACATGTCATCCAGGTCAGGTCATGGTAAATTCGTCCTCGGAATGGAAAC
ACCAAAAACCTTGCGAAGTACGAAGTTGAAAATCTCTCTCCCTACTGTGT
TGGAAGGGGAAGAATCGGATCTCAAAAAGAGCCTGTCATCTTCCAAAGAT
TCTTGA
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Coding sequence (CDS) from alignment at NODE_406_length_26511_cov_4.568963:22120..22575-

>Gcaud8390.t1 ID=Gcaud8390.t1|Name=Gcaud8390.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=456bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:22120..22575- (Gracilaria caudata M_176_S67 male)
ATGTTTACCACCACTGGAGCAAATCTTTCTCAAAATGTACGGCCCTTCCC
TGAGAATATAAGCACAGAAGTCCAAAGGTTTATGTCCGGAATTGACAAAC
ATGGCGTAGCTTCTCTAGAGGCGGCAATCAATCGCGAAAACCAGTGGTTG
AGTCGATCGACATCCCCTGTGCGAAGCGTCAAAAAAGTAGAGAGCATTAC
CAAGAATAACAAGCATTCAAACGAGAAGGACCTTTTGCTGCCAGTAATGG
ACGACGAGGATATGGAGTTTTCAGAAGCAGAAATGGAATCGGACGAAGAG
AACATGTCATCCAGGTCAGGTCATGGTAAATTCGTCCTCGGAATGGAAAC
ACCAAAAACCTTGCGAAGTACGAAGTTGAAAATCTCTCTCCCTACTGTGT
TGGAAGGGGAAGAATCGGATCTCAAAAAGAGCCTGTCATCTTCCAAAGAT
TCTTGA
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