Gcaud8377.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8377.t1
Unique Name	Gcaud8377.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	438

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1026_length_14910_cov_4.896079	contig	NODE_1026_length_14910_cov_4.896079:2807..4120 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LM92
PFAMs	CBM_1,LPMO_10
Max annot lvl	2759\|Eukaryota
Evalue	6.14e-28
EggNOG OGs	2CZUJ@1\|root,2SBQR@2759\|Eukaryota
Description	Fungal-type cellulose-binding domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8377	Gcaud8377	Gracilaria caudata M_176_S67 male	gene	NODE_1026_length_14910_cov_4.896079 2807..4120 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8377.t1.start1	Gcaud8377.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1026_length_14910_cov_4.896079 2807..2809 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8377.t1.CDS1	Gcaud8377.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1026_length_14910_cov_4.896079 2807..4120 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8377.t1.exon1	Gcaud8377.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1026_length_14910_cov_4.896079 2807..4120 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8377.t1.stop1	Gcaud8377.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1026_length_14910_cov_4.896079 4118..4120 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8377.t1	Gcaud8377.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1026_length_14910_cov_4.896079 2807..4120 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1026_length_14910_cov_4.896079:2807..4120+
coding sequence from alignment at NODE_1026_length_14910_cov_4.896079:2807..4120+

mRNA sequence

>Gcaud8377.t1 ID=Gcaud8377.t1|Name=Gcaud8377.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=438bp
MLSSTTSLFVVLAITLSVISVANAHGVMCLPRQRGAYHTSKCNPDLDFPG
MDNMVIDYCPHCLNGGGKGTVTSNLPPEGWSVYEPTKNFFGTADRTGLCG
DAKGSNEHMIGGQFMPYAEVPMVSKWKKGQQVDFVAEIDTNHNGYFEFFI
CNLDACGKPDLDASCFTNNHCVKLNRVPIDMCENPTPGTTSECGPVDAAY
PGRWYVPCRNTADHASKHIVGGDSGTMRYQLPADLECKHCVVQWYWATAN
SCAPRGFKNYFVNYNFPFGTNCASDGGGFGAYNAHMAECGGSEVPEEFWS
CADVQITADGADAGPVPARPNPQPVSVPVDNAQPETNTDAQQESLPATPA
PTQDPTMETGEESGDDLPRSQDTPIVPSEESGQVKQEELADAAQNCVALD
QICDGSAPCCDHQSFCVYLGGEARCRHWWTLAPDSQG*

spliced messenger RNA

>Gcaud8377.t1 ID=Gcaud8377.t1|Name=Gcaud8377.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1314bp|location=Sequence derived from alignment at NODE_1026_length_14910_cov_4.896079:2807..4120+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTCTTCCACAACATCGCTGTTCGTGGTGCTCGCAATCACACTATC
CGTCATCTCCGTCGCTAATGCCCATGGCGTGATGTGCTTACCTCGTCAAC
GTGGTGCCTACCACACCTCAAAGTGCAACCCCGACTTGGACTTTCCCGGC
ATGGACAACATGGTAATCGACTACTGTCCACACTGTCTCAACGGCGGCGG
AAAGGGCACCGTCACCTCAAACCTTCCGCCGGAGGGATGGAGCGTGTACG
AGCCCACCAAGAACTTCTTCGGCACAGCCGATCGTACCGGGCTGTGCGGC
GACGCCAAGGGCAGCAATGAACACATGATCGGCGGTCAGTTCATGCCGTA
TGCCGAGGTACCCATGGTTTCCAAGTGGAAGAAGGGGCAACAGGTCGATT
TTGTGGCCGAGATAGACACCAATCACAACGGCTATTTCGAGTTCTTCATC
TGCAATCTGGACGCGTGCGGAAAGCCGGATTTGGATGCCAGCTGTTTCAC
CAACAACCATTGTGTCAAGCTTAACCGCGTGCCGATTGATATGTGTGAAA
ACCCCACGCCAGGCACAACTTCCGAGTGTGGACCCGTTGATGCGGCGTAT
CCGGGACGTTGGTATGTGCCGTGTCGCAATACAGCAGACCATGCGAGCAA
ACACATCGTTGGCGGAGATTCTGGAACTATGCGTTATCAACTTCCGGCTG
ACCTGGAATGCAAGCACTGCGTGGTGCAGTGGTACTGGGCCACAGCCAAC
TCATGTGCGCCGCGAGGCTTCAAGAACTACTTCGTCAACTACAACTTTCC
GTTCGGCACAAATTGCGCTTCTGACGGTGGCGGCTTCGGCGCGTACAACG
CGCACATGGCGGAATGCGGGGGGAGCGAGGTGCCGGAAGAGTTCTGGTCG
TGTGCGGATGTGCAGATCACCGCCGATGGCGCCGATGCTGGCCCTGTGCC
AGCTCGCCCTAACCCGCAGCCCGTTTCTGTGCCCGTCGACAATGCACAGC
CCGAGACGAATACAGACGCTCAGCAAGAATCCCTGCCGGCAACTCCAGCG
CCCACGCAGGATCCGACCATGGAAACCGGTGAAGAGTCTGGCGACGATTT
GCCGCGTTCGCAGGATACCCCTATTGTACCCAGTGAAGAGTCTGGCCAGG
TCAAGCAGGAAGAGCTTGCGGATGCTGCTCAGAACTGCGTCGCGCTAGAT
CAGATATGTGATGGCAGTGCGCCGTGTTGTGATCACCAGAGTTTCTGTGT
ATATCTTGGCGGGGAGGCCCGGTGCCGCCACTGGTGGACCTTGGCGCCGG
ACTCGCAAGGCTGA

protein sequence of Gcaud8377.t1

>Gcaud8377.t1 ID=Gcaud8377.t1|Name=Gcaud8377.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=438bp
MLSSTTSLFVVLAITLSVISVANAHGVMCLPRQRGAYHTSKCNPDLDFPG
MDNMVIDYCPHCLNGGGKGTVTSNLPPEGWSVYEPTKNFFGTADRTGLCG
DAKGSNEHMIGGQFMPYAEVPMVSKWKKGQQVDFVAEIDTNHNGYFEFFI
CNLDACGKPDLDASCFTNNHCVKLNRVPIDMCENPTPGTTSECGPVDAAY
PGRWYVPCRNTADHASKHIVGGDSGTMRYQLPADLECKHCVVQWYWATAN
SCAPRGFKNYFVNYNFPFGTNCASDGGGFGAYNAHMAECGGSEVPEEFWS
CADVQITADGADAGPVPARPNPQPVSVPVDNAQPETNTDAQQESLPATPA
PTQDPTMETGEESGDDLPRSQDTPIVPSEESGQVKQEELADAAQNCVALD
QICDGSAPCCDHQSFCVYLGGEARCRHWWTLAPDSQG*

mRNA from alignment at NODE_1026_length_14910_cov_4.896079:2807..4120+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8377.t1 ID=Gcaud8377.t1|Name=Gcaud8377.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1314bp|location=Sequence derived from alignment at NODE_1026_length_14910_cov_4.896079:2807..4120+ (Gracilaria caudata M_176_S67 male)
ATGTTGTCTTCCACAACATCGCTGTTCGTGGTGCTCGCAATCACACTATC
CGTCATCTCCGTCGCTAATGCCCATGGCGTGATGTGCTTACCTCGTCAAC
GTGGTGCCTACCACACCTCAAAGTGCAACCCCGACTTGGACTTTCCCGGC
ATGGACAACATGGTAATCGACTACTGTCCACACTGTCTCAACGGCGGCGG
AAAGGGCACCGTCACCTCAAACCTTCCGCCGGAGGGATGGAGCGTGTACG
AGCCCACCAAGAACTTCTTCGGCACAGCCGATCGTACCGGGCTGTGCGGC
GACGCCAAGGGCAGCAATGAACACATGATCGGCGGTCAGTTCATGCCGTA
TGCCGAGGTACCCATGGTTTCCAAGTGGAAGAAGGGGCAACAGGTCGATT
TTGTGGCCGAGATAGACACCAATCACAACGGCTATTTCGAGTTCTTCATC
TGCAATCTGGACGCGTGCGGAAAGCCGGATTTGGATGCCAGCTGTTTCAC
CAACAACCATTGTGTCAAGCTTAACCGCGTGCCGATTGATATGTGTGAAA
ACCCCACGCCAGGCACAACTTCCGAGTGTGGACCCGTTGATGCGGCGTAT
CCGGGACGTTGGTATGTGCCGTGTCGCAATACAGCAGACCATGCGAGCAA
ACACATCGTTGGCGGAGATTCTGGAACTATGCGTTATCAACTTCCGGCTG
ACCTGGAATGCAAGCACTGCGTGGTGCAGTGGTACTGGGCCACAGCCAAC
TCATGTGCGCCGCGAGGCTTCAAGAACTACTTCGTCAACTACAACTTTCC
GTTCGGCACAAATTGCGCTTCTGACGGTGGCGGCTTCGGCGCGTACAACG
CGCACATGGCGGAATGCGGGGGGAGCGAGGTGCCGGAAGAGTTCTGGTCG
TGTGCGGATGTGCAGATCACCGCCGATGGCGCCGATGCTGGCCCTGTGCC
AGCTCGCCCTAACCCGCAGCCCGTTTCTGTGCCCGTCGACAATGCACAGC
CCGAGACGAATACAGACGCTCAGCAAGAATCCCTGCCGGCAACTCCAGCG
CCCACGCAGGATCCGACCATGGAAACCGGTGAAGAGTCTGGCGACGATTT
GCCGCGTTCGCAGGATACCCCTATTGTACCCAGTGAAGAGTCTGGCCAGG
TCAAGCAGGAAGAGCTTGCGGATGCTGCTCAGAACTGCGTCGCGCTAGAT
CAGATATGTGATGGCAGTGCGCCGTGTTGTGATCACCAGAGTTTCTGTGT
ATATCTTGGCGGGGAGGCCCGGTGCCGCCACTGGTGGACCTTGGCGCCGG
ACTCGCAAGGCTGA

Coding sequence (CDS) from alignment at NODE_1026_length_14910_cov_4.896079:2807..4120+

>Gcaud8377.t1 ID=Gcaud8377.t1|Name=Gcaud8377.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1314bp|location=Sequence derived from alignment at NODE_1026_length_14910_cov_4.896079:2807..4120+ (Gracilaria caudata M_176_S67 male)
ATGTTGTCTTCCACAACATCGCTGTTCGTGGTGCTCGCAATCACACTATC
CGTCATCTCCGTCGCTAATGCCCATGGCGTGATGTGCTTACCTCGTCAAC
GTGGTGCCTACCACACCTCAAAGTGCAACCCCGACTTGGACTTTCCCGGC
ATGGACAACATGGTAATCGACTACTGTCCACACTGTCTCAACGGCGGCGG
AAAGGGCACCGTCACCTCAAACCTTCCGCCGGAGGGATGGAGCGTGTACG
AGCCCACCAAGAACTTCTTCGGCACAGCCGATCGTACCGGGCTGTGCGGC
GACGCCAAGGGCAGCAATGAACACATGATCGGCGGTCAGTTCATGCCGTA
TGCCGAGGTACCCATGGTTTCCAAGTGGAAGAAGGGGCAACAGGTCGATT
TTGTGGCCGAGATAGACACCAATCACAACGGCTATTTCGAGTTCTTCATC
TGCAATCTGGACGCGTGCGGAAAGCCGGATTTGGATGCCAGCTGTTTCAC
CAACAACCATTGTGTCAAGCTTAACCGCGTGCCGATTGATATGTGTGAAA
ACCCCACGCCAGGCACAACTTCCGAGTGTGGACCCGTTGATGCGGCGTAT
CCGGGACGTTGGTATGTGCCGTGTCGCAATACAGCAGACCATGCGAGCAA
ACACATCGTTGGCGGAGATTCTGGAACTATGCGTTATCAACTTCCGGCTG
ACCTGGAATGCAAGCACTGCGTGGTGCAGTGGTACTGGGCCACAGCCAAC
TCATGTGCGCCGCGAGGCTTCAAGAACTACTTCGTCAACTACAACTTTCC
GTTCGGCACAAATTGCGCTTCTGACGGTGGCGGCTTCGGCGCGTACAACG
CGCACATGGCGGAATGCGGGGGGAGCGAGGTGCCGGAAGAGTTCTGGTCG
TGTGCGGATGTGCAGATCACCGCCGATGGCGCCGATGCTGGCCCTGTGCC
AGCTCGCCCTAACCCGCAGCCCGTTTCTGTGCCCGTCGACAATGCACAGC
CCGAGACGAATACAGACGCTCAGCAAGAATCCCTGCCGGCAACTCCAGCG
CCCACGCAGGATCCGACCATGGAAACCGGTGAAGAGTCTGGCGACGATTT
GCCGCGTTCGCAGGATACCCCTATTGTACCCAGTGAAGAGTCTGGCCAGG
TCAAGCAGGAAGAGCTTGCGGATGCTGCTCAGAACTGCGTCGCGCTAGAT
CAGATATGTGATGGCAGTGCGCCGTGTTGTGATCACCAGAGTTTCTGTGT
ATATCTTGGCGGGGAGGCCCGGTGCCGCCACTGGTGGACCTTGGCGCCGG
ACTCGCAAGGCTGA