Gcaud8367.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8367.t1
Unique Name	Gcaud8367.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	700

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_163_length_42078_cov_4.640103	contig	NODE_163_length_42078_cov_4.640103:25533..27632 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	117187.FVEG_00299T0
PFAMs	DUF1620,PQQ_2
Max annot lvl	4751\|Fungi
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006457,GO:0008150,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0022406,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032991,GO:0034975,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051640,GO:0051641,GO:0071840,GO:0072546,GO:0098796,GO:0098827,GO:0140056,GO:1990456
Evalue	7.37e-20
EggNOG OGs	KOG2103@1\|root,KOG2103@2759\|Eukaryota,394KZ@33154\|Opisthokonta,3NWQ6@4751\|Fungi,3QP8F@4890\|Ascomycota,211YX@147550\|Sordariomycetes,3TDTN@5125\|Hypocreales,1FSNB@110618\|Nectriaceae
Description	Protein of unknown function (DUF1620)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8367	Gcaud8367	Gracilaria caudata M_176_S67 male	gene	NODE_163_length_42078_cov_4.640103 25533..27632 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8367.t1.stop1	Gcaud8367.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_163_length_42078_cov_4.640103 25533..25535 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8367.t1.CDS1	Gcaud8367.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_163_length_42078_cov_4.640103 25533..27632 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8367.t1.exon1	Gcaud8367.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_163_length_42078_cov_4.640103 25533..27632 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8367.t1.start1	Gcaud8367.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_163_length_42078_cov_4.640103 27630..27632 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8367.t1	Gcaud8367.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_163_length_42078_cov_4.640103 25533..27632 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_163_length_42078_cov_4.640103:25533..27632-
coding sequence from alignment at NODE_163_length_42078_cov_4.640103:25533..27632-

mRNA sequence

>Gcaud8367.t1 ID=Gcaud8367.t1|Name=Gcaud8367.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=700bp
MKAIVYVLLFLFLSNLQIAVLSSQQFRKGLGRVIWVLPPNVSQPQSDVIV
LTARSTIASLSIENGSILWRLPHPISENAIGPSAVVSNGEVMVVQFSDNR
IRTCHRNGSVLWEMSSCELLSLNRNRVLYRSCDSGEIMHIDLLNGEFLSL
EEESEVSSTSVEKLESHSVGRRTWQVNNASLSSEDDGRFQALKNGKVLWY
LEEGLAHPLDVAVYPFENFPVLVLLSELGFVSGLDGTADIELLWKKPVSG
KCRLVQDHAEVVVIVCLEGKQSKVMAINPVSGKEIFHKMYDDFVVETAAI
HQVCETNVCVHLSDANGRNEFASTESIDLGNSHMIRIQYESRGSELTAFV
AGSAVWKINVAHSSKIFKVISGERHPFENTLGLPSIRITGDRRVLFKYSH
QHVLIVLSFDEAKENVYATLIDGRSGEIYEVIEHPRSMPTSSGTKGENWF
LYTTWNTDLLINEVHIVDMYQQQGLHTSWVRKRLRESLSRYWTSFSDLTL
VQQKPRGSEADHSNPGCAADGELPMSGSKDQPYVVRSSMVLTHVPVGMAV
TRTKLGVTEQSVLFVLDSGQSALVSKSTVDARRPKNMNPAYASEYLRGYT
PSLSLQSTSHDNIYVEVNGIQPVGIQSVFCAPDMSRESSSHVVSTGLDLL
LTQVHPIGKFDFLDSDFNFLTVLFVIVILLFSYLYSESLLRKTSLSRSW*

spliced messenger RNA

>Gcaud8367.t1 ID=Gcaud8367.t1|Name=Gcaud8367.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2100bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:25533..27632- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGCAATCGTTTATGTTCTTTTGTTCCTTTTCTTGTCCAATCTTCA
GATCGCGGTCTTGTCCTCGCAACAGTTCCGAAAAGGTCTGGGTCGCGTTA
TATGGGTCCTACCCCCAAATGTTTCCCAACCCCAATCTGACGTGATCGTG
CTCACAGCAAGATCAACGATAGCGTCATTGAGTATTGAGAACGGCTCAAT
CCTTTGGCGACTTCCGCATCCAATATCCGAAAATGCTATCGGCCCGTCGG
CCGTTGTGTCCAACGGTGAAGTTATGGTGGTTCAGTTTTCTGATAACAGA
ATACGTACTTGCCACAGAAACGGGTCAGTACTGTGGGAGATGAGTTCGTG
CGAATTGCTAAGCCTAAACAGAAACAGGGTGTTATATCGGTCTTGCGATT
CTGGAGAAATCATGCACATTGATCTCTTGAACGGTGAATTTCTTTCCCTG
GAAGAAGAAAGCGAGGTATCATCCACGTCTGTGGAAAAGCTTGAAAGCCA
CAGCGTTGGTAGAAGAACATGGCAGGTTAACAACGCATCGCTGAGCTCAG
AAGATGACGGCCGATTTCAAGCACTTAAGAACGGTAAAGTTCTTTGGTAT
CTTGAAGAAGGTCTTGCACACCCCCTTGATGTTGCTGTGTATCCTTTTGA
AAACTTTCCCGTGCTGGTATTGTTATCGGAACTGGGTTTCGTGTCAGGAC
TGGATGGTACTGCAGACATTGAATTGCTTTGGAAGAAGCCTGTCAGTGGA
AAATGCCGACTGGTCCAAGATCATGCAGAAGTCGTTGTCATCGTCTGCCT
TGAAGGAAAACAGTCAAAAGTGATGGCTATTAATCCAGTTTCAGGCAAGG
AAATCTTCCATAAGATGTACGACGACTTTGTAGTGGAAACAGCAGCGATA
CACCAAGTATGCGAAACAAATGTATGCGTTCACCTTTCAGATGCTAATGG
CCGGAATGAGTTTGCCTCCACAGAGAGTATTGACCTGGGTAATAGCCACA
TGATCCGAATCCAGTATGAGTCGAGGGGTTCTGAACTTACAGCGTTCGTT
GCAGGGTCAGCAGTGTGGAAGATTAATGTCGCTCATAGTTCAAAGATCTT
CAAGGTCATCTCTGGCGAAAGGCATCCGTTTGAAAATACGTTAGGCCTGC
CTTCTATTCGGATAACTGGTGACCGACGAGTGCTCTTCAAATATTCACAT
CAGCATGTTTTGATCGTTCTTTCTTTTGATGAAGCGAAGGAGAACGTCTA
CGCTACGCTAATCGATGGGCGCTCGGGAGAAATCTACGAAGTAATTGAAC
ATCCAAGGTCGATGCCTACATCTTCAGGAACCAAAGGAGAAAACTGGTTC
TTATATACAACTTGGAACACAGATTTGTTAATTAATGAAGTGCACATAGT
TGATATGTATCAACAGCAGGGTCTTCACACATCATGGGTGCGAAAACGTC
TACGAGAATCGTTGTCCAGGTATTGGACTTCTTTTTCAGATTTGACTCTC
GTTCAACAGAAGCCACGAGGATCTGAAGCGGATCATTCTAACCCAGGCTG
TGCTGCAGACGGTGAACTGCCGATGTCAGGTTCCAAAGATCAACCTTACG
TCGTAAGATCAAGTATGGTATTAACACACGTACCCGTAGGAATGGCAGTG
ACAAGAACGAAACTTGGTGTCACAGAACAATCAGTTTTGTTTGTACTAGA
CTCTGGACAGAGTGCTCTTGTATCAAAGTCGACCGTTGATGCGAGACGAC
CGAAAAACATGAACCCAGCATATGCCTCTGAATACTTGCGGGGTTATACT
CCCTCGCTCTCGCTTCAGTCTACATCACACGACAACATTTATGTAGAGGT
GAACGGAATCCAGCCCGTTGGAATTCAATCAGTCTTTTGCGCTCCTGACA
TGTCAAGAGAGAGTTCGAGCCACGTTGTCTCGACAGGGTTAGATCTGCTC
TTAACCCAGGTGCATCCTATTGGAAAGTTCGATTTCCTTGATTCTGACTT
TAATTTCTTAACAGTGCTTTTCGTGATAGTCATCCTTCTGTTTTCGTATC
TGTATAGTGAAAGCCTTCTGCGAAAGACTTCTTTGTCAAGATCATGGTAA

protein sequence of Gcaud8367.t1

>Gcaud8367.t1 ID=Gcaud8367.t1|Name=Gcaud8367.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=700bp
MKAIVYVLLFLFLSNLQIAVLSSQQFRKGLGRVIWVLPPNVSQPQSDVIV
LTARSTIASLSIENGSILWRLPHPISENAIGPSAVVSNGEVMVVQFSDNR
IRTCHRNGSVLWEMSSCELLSLNRNRVLYRSCDSGEIMHIDLLNGEFLSL
EEESEVSSTSVEKLESHSVGRRTWQVNNASLSSEDDGRFQALKNGKVLWY
LEEGLAHPLDVAVYPFENFPVLVLLSELGFVSGLDGTADIELLWKKPVSG
KCRLVQDHAEVVVIVCLEGKQSKVMAINPVSGKEIFHKMYDDFVVETAAI
HQVCETNVCVHLSDANGRNEFASTESIDLGNSHMIRIQYESRGSELTAFV
AGSAVWKINVAHSSKIFKVISGERHPFENTLGLPSIRITGDRRVLFKYSH
QHVLIVLSFDEAKENVYATLIDGRSGEIYEVIEHPRSMPTSSGTKGENWF
LYTTWNTDLLINEVHIVDMYQQQGLHTSWVRKRLRESLSRYWTSFSDLTL
VQQKPRGSEADHSNPGCAADGELPMSGSKDQPYVVRSSMVLTHVPVGMAV
TRTKLGVTEQSVLFVLDSGQSALVSKSTVDARRPKNMNPAYASEYLRGYT
PSLSLQSTSHDNIYVEVNGIQPVGIQSVFCAPDMSRESSSHVVSTGLDLL
LTQVHPIGKFDFLDSDFNFLTVLFVIVILLFSYLYSESLLRKTSLSRSW*

mRNA from alignment at NODE_163_length_42078_cov_4.640103:25533..27632-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8367.t1 ID=Gcaud8367.t1|Name=Gcaud8367.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2100bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:25533..27632- (Gracilaria caudata M_176_S67 male)
ATGAAAGCAATCGTTTATGTTCTTTTGTTCCTTTTCTTGTCCAATCTTCA
GATCGCGGTCTTGTCCTCGCAACAGTTCCGAAAAGGTCTGGGTCGCGTTA
TATGGGTCCTACCCCCAAATGTTTCCCAACCCCAATCTGACGTGATCGTG
CTCACAGCAAGATCAACGATAGCGTCATTGAGTATTGAGAACGGCTCAAT
CCTTTGGCGACTTCCGCATCCAATATCCGAAAATGCTATCGGCCCGTCGG
CCGTTGTGTCCAACGGTGAAGTTATGGTGGTTCAGTTTTCTGATAACAGA
ATACGTACTTGCCACAGAAACGGGTCAGTACTGTGGGAGATGAGTTCGTG
CGAATTGCTAAGCCTAAACAGAAACAGGGTGTTATATCGGTCTTGCGATT
CTGGAGAAATCATGCACATTGATCTCTTGAACGGTGAATTTCTTTCCCTG
GAAGAAGAAAGCGAGGTATCATCCACGTCTGTGGAAAAGCTTGAAAGCCA
CAGCGTTGGTAGAAGAACATGGCAGGTTAACAACGCATCGCTGAGCTCAG
AAGATGACGGCCGATTTCAAGCACTTAAGAACGGTAAAGTTCTTTGGTAT
CTTGAAGAAGGTCTTGCACACCCCCTTGATGTTGCTGTGTATCCTTTTGA
AAACTTTCCCGTGCTGGTATTGTTATCGGAACTGGGTTTCGTGTCAGGAC
TGGATGGTACTGCAGACATTGAATTGCTTTGGAAGAAGCCTGTCAGTGGA
AAATGCCGACTGGTCCAAGATCATGCAGAAGTCGTTGTCATCGTCTGCCT
TGAAGGAAAACAGTCAAAAGTGATGGCTATTAATCCAGTTTCAGGCAAGG
AAATCTTCCATAAGATGTACGACGACTTTGTAGTGGAAACAGCAGCGATA
CACCAAGTATGCGAAACAAATGTATGCGTTCACCTTTCAGATGCTAATGG
CCGGAATGAGTTTGCCTCCACAGAGAGTATTGACCTGGGTAATAGCCACA
TGATCCGAATCCAGTATGAGTCGAGGGGTTCTGAACTTACAGCGTTCGTT
GCAGGGTCAGCAGTGTGGAAGATTAATGTCGCTCATAGTTCAAAGATCTT
CAAGGTCATCTCTGGCGAAAGGCATCCGTTTGAAAATACGTTAGGCCTGC
CTTCTATTCGGATAACTGGTGACCGACGAGTGCTCTTCAAATATTCACAT
CAGCATGTTTTGATCGTTCTTTCTTTTGATGAAGCGAAGGAGAACGTCTA
CGCTACGCTAATCGATGGGCGCTCGGGAGAAATCTACGAAGTAATTGAAC
ATCCAAGGTCGATGCCTACATCTTCAGGAACCAAAGGAGAAAACTGGTTC
TTATATACAACTTGGAACACAGATTTGTTAATTAATGAAGTGCACATAGT
TGATATGTATCAACAGCAGGGTCTTCACACATCATGGGTGCGAAAACGTC
TACGAGAATCGTTGTCCAGGTATTGGACTTCTTTTTCAGATTTGACTCTC
GTTCAACAGAAGCCACGAGGATCTGAAGCGGATCATTCTAACCCAGGCTG
TGCTGCAGACGGTGAACTGCCGATGTCAGGTTCCAAAGATCAACCTTACG
TCGTAAGATCAAGTATGGTATTAACACACGTACCCGTAGGAATGGCAGTG
ACAAGAACGAAACTTGGTGTCACAGAACAATCAGTTTTGTTTGTACTAGA
CTCTGGACAGAGTGCTCTTGTATCAAAGTCGACCGTTGATGCGAGACGAC
CGAAAAACATGAACCCAGCATATGCCTCTGAATACTTGCGGGGTTATACT
CCCTCGCTCTCGCTTCAGTCTACATCACACGACAACATTTATGTAGAGGT
GAACGGAATCCAGCCCGTTGGAATTCAATCAGTCTTTTGCGCTCCTGACA
TGTCAAGAGAGAGTTCGAGCCACGTTGTCTCGACAGGGTTAGATCTGCTC
TTAACCCAGGTGCATCCTATTGGAAAGTTCGATTTCCTTGATTCTGACTT
TAATTTCTTAACAGTGCTTTTCGTGATAGTCATCCTTCTGTTTTCGTATC
TGTATAGTGAAAGCCTTCTGCGAAAGACTTCTTTGTCAAGATCATGGTAA

Coding sequence (CDS) from alignment at NODE_163_length_42078_cov_4.640103:25533..27632-

>Gcaud8367.t1 ID=Gcaud8367.t1|Name=Gcaud8367.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2100bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:25533..27632- (Gracilaria caudata M_176_S67 male)
ATGAAAGCAATCGTTTATGTTCTTTTGTTCCTTTTCTTGTCCAATCTTCA
GATCGCGGTCTTGTCCTCGCAACAGTTCCGAAAAGGTCTGGGTCGCGTTA
TATGGGTCCTACCCCCAAATGTTTCCCAACCCCAATCTGACGTGATCGTG
CTCACAGCAAGATCAACGATAGCGTCATTGAGTATTGAGAACGGCTCAAT
CCTTTGGCGACTTCCGCATCCAATATCCGAAAATGCTATCGGCCCGTCGG
CCGTTGTGTCCAACGGTGAAGTTATGGTGGTTCAGTTTTCTGATAACAGA
ATACGTACTTGCCACAGAAACGGGTCAGTACTGTGGGAGATGAGTTCGTG
CGAATTGCTAAGCCTAAACAGAAACAGGGTGTTATATCGGTCTTGCGATT
CTGGAGAAATCATGCACATTGATCTCTTGAACGGTGAATTTCTTTCCCTG
GAAGAAGAAAGCGAGGTATCATCCACGTCTGTGGAAAAGCTTGAAAGCCA
CAGCGTTGGTAGAAGAACATGGCAGGTTAACAACGCATCGCTGAGCTCAG
AAGATGACGGCCGATTTCAAGCACTTAAGAACGGTAAAGTTCTTTGGTAT
CTTGAAGAAGGTCTTGCACACCCCCTTGATGTTGCTGTGTATCCTTTTGA
AAACTTTCCCGTGCTGGTATTGTTATCGGAACTGGGTTTCGTGTCAGGAC
TGGATGGTACTGCAGACATTGAATTGCTTTGGAAGAAGCCTGTCAGTGGA
AAATGCCGACTGGTCCAAGATCATGCAGAAGTCGTTGTCATCGTCTGCCT
TGAAGGAAAACAGTCAAAAGTGATGGCTATTAATCCAGTTTCAGGCAAGG
AAATCTTCCATAAGATGTACGACGACTTTGTAGTGGAAACAGCAGCGATA
CACCAAGTATGCGAAACAAATGTATGCGTTCACCTTTCAGATGCTAATGG
CCGGAATGAGTTTGCCTCCACAGAGAGTATTGACCTGGGTAATAGCCACA
TGATCCGAATCCAGTATGAGTCGAGGGGTTCTGAACTTACAGCGTTCGTT
GCAGGGTCAGCAGTGTGGAAGATTAATGTCGCTCATAGTTCAAAGATCTT
CAAGGTCATCTCTGGCGAAAGGCATCCGTTTGAAAATACGTTAGGCCTGC
CTTCTATTCGGATAACTGGTGACCGACGAGTGCTCTTCAAATATTCACAT
CAGCATGTTTTGATCGTTCTTTCTTTTGATGAAGCGAAGGAGAACGTCTA
CGCTACGCTAATCGATGGGCGCTCGGGAGAAATCTACGAAGTAATTGAAC
ATCCAAGGTCGATGCCTACATCTTCAGGAACCAAAGGAGAAAACTGGTTC
TTATATACAACTTGGAACACAGATTTGTTAATTAATGAAGTGCACATAGT
TGATATGTATCAACAGCAGGGTCTTCACACATCATGGGTGCGAAAACGTC
TACGAGAATCGTTGTCCAGGTATTGGACTTCTTTTTCAGATTTGACTCTC
GTTCAACAGAAGCCACGAGGATCTGAAGCGGATCATTCTAACCCAGGCTG
TGCTGCAGACGGTGAACTGCCGATGTCAGGTTCCAAAGATCAACCTTACG
TCGTAAGATCAAGTATGGTATTAACACACGTACCCGTAGGAATGGCAGTG
ACAAGAACGAAACTTGGTGTCACAGAACAATCAGTTTTGTTTGTACTAGA
CTCTGGACAGAGTGCTCTTGTATCAAAGTCGACCGTTGATGCGAGACGAC
CGAAAAACATGAACCCAGCATATGCCTCTGAATACTTGCGGGGTTATACT
CCCTCGCTCTCGCTTCAGTCTACATCACACGACAACATTTATGTAGAGGT
GAACGGAATCCAGCCCGTTGGAATTCAATCAGTCTTTTGCGCTCCTGACA
TGTCAAGAGAGAGTTCGAGCCACGTTGTCTCGACAGGGTTAGATCTGCTC
TTAACCCAGGTGCATCCTATTGGAAAGTTCGATTTCCTTGATTCTGACTT
TAATTTCTTAACAGTGCTTTTCGTGATAGTCATCCTTCTGTTTTCGTATC
TGTATAGTGAAAGCCTTCTGCGAAAGACTTCTTTGTCAAGATCATGGTAA