Gcaud8366.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8366.t1
Unique Name	Gcaud8366.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	475

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_163_length_42078_cov_4.640103	contig	NODE_163_length_42078_cov_4.640103:23976..25400 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708697.1
PFAMs	Orn_Arg_deC_N,Orn_DAP_Arg_deC
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00299
KEGG ko	ko:K01586,ko:K01611,ko:K18408
KEGG Reaction	R00178,R00451
KEGG Pathway	ko00270,ko00300,ko00330,ko01100,ko01110,ko01120,ko01130,ko01230,map00270,map00300,map00330,map01100,map01110,map01120,map01130,map01230
KEGG Module	M00016,M00034,M00133,M00525,M00526,M00527
Evalue	5.37e-190
EggNOG OGs	COG0019@1\|root,KOG0622@2759\|Eukaryota
EC	3.6.4.13,4.1.1.20,4.1.1.50
Description	putrescine biosynthetic process from ornithine
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8366	Gcaud8366	Gracilaria caudata M_176_S67 male	gene	NODE_163_length_42078_cov_4.640103 23976..25400 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8366.t1.start1	Gcaud8366.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_163_length_42078_cov_4.640103 23976..23978 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8366.t1.CDS1	Gcaud8366.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_163_length_42078_cov_4.640103 23976..25400 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8366.t1.exon1	Gcaud8366.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_163_length_42078_cov_4.640103 23976..25400 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8366.t1.stop1	Gcaud8366.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_163_length_42078_cov_4.640103 25398..25400 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8366.t1	Gcaud8366.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_163_length_42078_cov_4.640103 23976..25400 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_163_length_42078_cov_4.640103:23976..25400+
coding sequence from alignment at NODE_163_length_42078_cov_4.640103:23976..25400+

mRNA sequence

>Gcaud8366.t1 ID=Gcaud8366.t1|Name=Gcaud8366.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=475bp
MAFVSSIRFPALRFQDSNSNSSKISSFPGLRTCSPTYQIKRLCRSTRMVV
AAPAVENPTPTFSTNEDGFMTCEGVRIRDIQNDMDTSPLYVYSKKQLVDN
YKAYEEALKGLPSIIGYALKANNNLRLVEMLRELGSGAVLVSGNELRLAV
KAGMDMTKTVFNGNGKTYQELKYAVKCGCLVNIDSEFDLEHICEAANEVG
KPANVLIRINPDVDPEVHPYVSTGLASSKFGIRNSHLQWFLDRIKEEDML
ALVGVHCHLGSTIKKVDIFKDAAEIMLGFIDVIKNQGFESLKYLNIGGGL
GIDYERVGEQIPRPIDLVNTIRPQLVKAGLTIIVEPGRSMVGNTAVFVSK
VIGVKTNGSKNFIVTDGSMAELIRPSLYDAYQFICLTEPGGSIETFDIVG
PVCESADFLGKNRTMPTPREGSGLAVMDAGAYCYVMASNYNMKIKPAEVL
VDGDVWSIIRRAETFEDMMALYEN*

spliced messenger RNA

>Gcaud8366.t1 ID=Gcaud8366.t1|Name=Gcaud8366.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:23976..25400+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATTCGTGTCGAGCATCCGATTCCCGGCTCTTCGCTTCCAGGACTC
AAACTCAAACTCAAGCAAGATATCGTCATTTCCTGGACTCAGAACATGTT
CTCCCACTTACCAAATAAAGCGATTGTGCAGATCGACTAGAATGGTTGTA
GCCGCTCCAGCTGTGGAGAATCCAACGCCAACTTTCTCGACGAACGAAGA
CGGCTTTATGACCTGTGAAGGTGTTCGAATTCGGGATATTCAAAACGACA
TGGATACAAGCCCACTTTATGTGTACTCGAAGAAGCAACTTGTCGATAAC
TACAAGGCATATGAAGAGGCTTTGAAAGGGTTACCGTCAATCATTGGATA
TGCACTCAAAGCAAACAACAACCTTCGCCTTGTCGAAATGCTCAGAGAAC
TTGGTTCTGGTGCAGTCCTTGTATCCGGAAACGAACTCCGACTGGCCGTT
AAGGCAGGGATGGATATGACCAAAACTGTATTTAATGGAAACGGTAAAAC
TTATCAAGAGCTCAAATATGCTGTGAAATGTGGATGTCTTGTCAATATCG
ATTCTGAATTTGACCTCGAACATATATGTGAAGCAGCGAACGAAGTCGGA
AAACCAGCTAATGTTCTTATTAGAATCAACCCTGATGTGGACCCTGAAGT
ACATCCGTACGTGAGCACGGGGTTGGCCAGTAGCAAATTTGGCATTCGGA
ATTCACACCTTCAATGGTTTTTGGATCGAATCAAAGAAGAAGACATGCTC
GCTCTGGTTGGGGTTCATTGTCATCTAGGAAGCACAATCAAGAAGGTGGA
CATTTTCAAAGACGCGGCTGAAATCATGTTGGGATTTATAGATGTTATCA
AAAACCAAGGATTCGAAAGTCTCAAGTACCTCAATATCGGCGGTGGTTTG
GGCATTGACTACGAAAGAGTTGGAGAACAAATTCCCCGCCCCATCGACCT
GGTCAACACTATCCGCCCTCAACTAGTAAAGGCTGGCCTGACAATTATCG
TTGAACCGGGAAGGTCCATGGTTGGCAACACAGCAGTATTCGTCAGCAAA
GTCATCGGCGTGAAGACAAATGGTTCTAAGAACTTCATTGTAACCGACGG
CAGCATGGCTGAGCTTATTAGGCCAAGCCTCTATGATGCTTATCAGTTCA
TATGCCTTACAGAGCCAGGAGGCTCAATTGAAACCTTTGACATCGTTGGG
CCAGTCTGCGAGAGCGCCGACTTTTTGGGAAAGAATAGGACCATGCCCAC
CCCTAGGGAGGGATCTGGCCTAGCCGTAATGGATGCCGGTGCGTACTGCT
ATGTTATGGCTTCAAATTATAACATGAAGATCAAACCTGCGGAAGTTCTT
GTTGATGGTGATGTGTGGAGTATCATTCGACGTGCAGAAACATTTGAAGA
TATGATGGCCTTATACGAGAACTAA

protein sequence of Gcaud8366.t1

>Gcaud8366.t1 ID=Gcaud8366.t1|Name=Gcaud8366.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=475bp
MAFVSSIRFPALRFQDSNSNSSKISSFPGLRTCSPTYQIKRLCRSTRMVV
AAPAVENPTPTFSTNEDGFMTCEGVRIRDIQNDMDTSPLYVYSKKQLVDN
YKAYEEALKGLPSIIGYALKANNNLRLVEMLRELGSGAVLVSGNELRLAV
KAGMDMTKTVFNGNGKTYQELKYAVKCGCLVNIDSEFDLEHICEAANEVG
KPANVLIRINPDVDPEVHPYVSTGLASSKFGIRNSHLQWFLDRIKEEDML
ALVGVHCHLGSTIKKVDIFKDAAEIMLGFIDVIKNQGFESLKYLNIGGGL
GIDYERVGEQIPRPIDLVNTIRPQLVKAGLTIIVEPGRSMVGNTAVFVSK
VIGVKTNGSKNFIVTDGSMAELIRPSLYDAYQFICLTEPGGSIETFDIVG
PVCESADFLGKNRTMPTPREGSGLAVMDAGAYCYVMASNYNMKIKPAEVL
VDGDVWSIIRRAETFEDMMALYEN*

mRNA from alignment at NODE_163_length_42078_cov_4.640103:23976..25400+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8366.t1 ID=Gcaud8366.t1|Name=Gcaud8366.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:23976..25400+ (Gracilaria caudata M_176_S67 male)
ATGGCATTCGTGTCGAGCATCCGATTCCCGGCTCTTCGCTTCCAGGACTC
AAACTCAAACTCAAGCAAGATATCGTCATTTCCTGGACTCAGAACATGTT
CTCCCACTTACCAAATAAAGCGATTGTGCAGATCGACTAGAATGGTTGTA
GCCGCTCCAGCTGTGGAGAATCCAACGCCAACTTTCTCGACGAACGAAGA
CGGCTTTATGACCTGTGAAGGTGTTCGAATTCGGGATATTCAAAACGACA
TGGATACAAGCCCACTTTATGTGTACTCGAAGAAGCAACTTGTCGATAAC
TACAAGGCATATGAAGAGGCTTTGAAAGGGTTACCGTCAATCATTGGATA
TGCACTCAAAGCAAACAACAACCTTCGCCTTGTCGAAATGCTCAGAGAAC
TTGGTTCTGGTGCAGTCCTTGTATCCGGAAACGAACTCCGACTGGCCGTT
AAGGCAGGGATGGATATGACCAAAACTGTATTTAATGGAAACGGTAAAAC
TTATCAAGAGCTCAAATATGCTGTGAAATGTGGATGTCTTGTCAATATCG
ATTCTGAATTTGACCTCGAACATATATGTGAAGCAGCGAACGAAGTCGGA
AAACCAGCTAATGTTCTTATTAGAATCAACCCTGATGTGGACCCTGAAGT
ACATCCGTACGTGAGCACGGGGTTGGCCAGTAGCAAATTTGGCATTCGGA
ATTCACACCTTCAATGGTTTTTGGATCGAATCAAAGAAGAAGACATGCTC
GCTCTGGTTGGGGTTCATTGTCATCTAGGAAGCACAATCAAGAAGGTGGA
CATTTTCAAAGACGCGGCTGAAATCATGTTGGGATTTATAGATGTTATCA
AAAACCAAGGATTCGAAAGTCTCAAGTACCTCAATATCGGCGGTGGTTTG
GGCATTGACTACGAAAGAGTTGGAGAACAAATTCCCCGCCCCATCGACCT
GGTCAACACTATCCGCCCTCAACTAGTAAAGGCTGGCCTGACAATTATCG
TTGAACCGGGAAGGTCCATGGTTGGCAACACAGCAGTATTCGTCAGCAAA
GTCATCGGCGTGAAGACAAATGGTTCTAAGAACTTCATTGTAACCGACGG
CAGCATGGCTGAGCTTATTAGGCCAAGCCTCTATGATGCTTATCAGTTCA
TATGCCTTACAGAGCCAGGAGGCTCAATTGAAACCTTTGACATCGTTGGG
CCAGTCTGCGAGAGCGCCGACTTTTTGGGAAAGAATAGGACCATGCCCAC
CCCTAGGGAGGGATCTGGCCTAGCCGTAATGGATGCCGGTGCGTACTGCT
ATGTTATGGCTTCAAATTATAACATGAAGATCAAACCTGCGGAAGTTCTT
GTTGATGGTGATGTGTGGAGTATCATTCGACGTGCAGAAACATTTGAAGA
TATGATGGCCTTATACGAGAACTAA

Coding sequence (CDS) from alignment at NODE_163_length_42078_cov_4.640103:23976..25400+

>Gcaud8366.t1 ID=Gcaud8366.t1|Name=Gcaud8366.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1425bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:23976..25400+ (Gracilaria caudata M_176_S67 male)
ATGGCATTCGTGTCGAGCATCCGATTCCCGGCTCTTCGCTTCCAGGACTC
AAACTCAAACTCAAGCAAGATATCGTCATTTCCTGGACTCAGAACATGTT
CTCCCACTTACCAAATAAAGCGATTGTGCAGATCGACTAGAATGGTTGTA
GCCGCTCCAGCTGTGGAGAATCCAACGCCAACTTTCTCGACGAACGAAGA
CGGCTTTATGACCTGTGAAGGTGTTCGAATTCGGGATATTCAAAACGACA
TGGATACAAGCCCACTTTATGTGTACTCGAAGAAGCAACTTGTCGATAAC
TACAAGGCATATGAAGAGGCTTTGAAAGGGTTACCGTCAATCATTGGATA
TGCACTCAAAGCAAACAACAACCTTCGCCTTGTCGAAATGCTCAGAGAAC
TTGGTTCTGGTGCAGTCCTTGTATCCGGAAACGAACTCCGACTGGCCGTT
AAGGCAGGGATGGATATGACCAAAACTGTATTTAATGGAAACGGTAAAAC
TTATCAAGAGCTCAAATATGCTGTGAAATGTGGATGTCTTGTCAATATCG
ATTCTGAATTTGACCTCGAACATATATGTGAAGCAGCGAACGAAGTCGGA
AAACCAGCTAATGTTCTTATTAGAATCAACCCTGATGTGGACCCTGAAGT
ACATCCGTACGTGAGCACGGGGTTGGCCAGTAGCAAATTTGGCATTCGGA
ATTCACACCTTCAATGGTTTTTGGATCGAATCAAAGAAGAAGACATGCTC
GCTCTGGTTGGGGTTCATTGTCATCTAGGAAGCACAATCAAGAAGGTGGA
CATTTTCAAAGACGCGGCTGAAATCATGTTGGGATTTATAGATGTTATCA
AAAACCAAGGATTCGAAAGTCTCAAGTACCTCAATATCGGCGGTGGTTTG
GGCATTGACTACGAAAGAGTTGGAGAACAAATTCCCCGCCCCATCGACCT
GGTCAACACTATCCGCCCTCAACTAGTAAAGGCTGGCCTGACAATTATCG
TTGAACCGGGAAGGTCCATGGTTGGCAACACAGCAGTATTCGTCAGCAAA
GTCATCGGCGTGAAGACAAATGGTTCTAAGAACTTCATTGTAACCGACGG
CAGCATGGCTGAGCTTATTAGGCCAAGCCTCTATGATGCTTATCAGTTCA
TATGCCTTACAGAGCCAGGAGGCTCAATTGAAACCTTTGACATCGTTGGG
CCAGTCTGCGAGAGCGCCGACTTTTTGGGAAAGAATAGGACCATGCCCAC
CCCTAGGGAGGGATCTGGCCTAGCCGTAATGGATGCCGGTGCGTACTGCT
ATGTTATGGCTTCAAATTATAACATGAAGATCAAACCTGCGGAAGTTCTT
GTTGATGGTGATGTGTGGAGTATCATTCGACGTGCAGAAACATTTGAAGA
TATGATGGCCTTATACGAGAACTAA