Gcaud8361.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8361.t1
Unique Name	Gcaud8361.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	467

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_163_length_42078_cov_4.640103	contig	NODE_163_length_42078_cov_4.640103:8772..10172 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173025.GEI7407_1626
Preferred name	hemL
PFAMs	Aminotran_3
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00677
KEGG ko	ko:K01845
KEGG Reaction	R02272
KEGG Pathway	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG Module	M00121
Evalue	7.96e-229
EggNOG OGs	COG0001@1\|root,COG0001@2\|Bacteria,1G162@1117\|Cyanobacteria,1H7TE@1150\|Oscillatoriales
EC	5.4.3.8
Description	PFAM aminotransferase class-III
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8361	Gcaud8361	Gracilaria caudata M_176_S67 male	gene	NODE_163_length_42078_cov_4.640103 8772..10172 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8361.t1.stop1	Gcaud8361.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_163_length_42078_cov_4.640103 8772..8774 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8361.t1.CDS1	Gcaud8361.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_163_length_42078_cov_4.640103 8772..10172 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8361.t1.exon1	Gcaud8361.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_163_length_42078_cov_4.640103 8772..10172 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8361.t1.start1	Gcaud8361.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_163_length_42078_cov_4.640103 10170..10172 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8361.t1	Gcaud8361.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_163_length_42078_cov_4.640103 8772..10172 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_163_length_42078_cov_4.640103:8772..10172-
coding sequence from alignment at NODE_163_length_42078_cov_4.640103:8772..10172-

mRNA sequence

>Gcaud8361.t1 ID=Gcaud8361.t1|Name=Gcaud8361.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=467bp
MTFKVSAFMTSLPLRSQPLANCSKLSSQRPVTMVASQSLKTSESQRVLQE
AADLMPGGVSSPVRAFKSVGGNAVVFDSVKGSKAYDIDGNEYIDYIGSWG
PAIVGAANEEVTAALQEALKKGTSFGAPSVLENELAKMVIDAVPSVEMVR
FVNSGTEACMSVVRVMRAFTQRQKIIKFSGCYHGHADMYLVQAGSGVLTL
GLPDSPGVPKASTETTLVAKYNDLDSVKAVFEQNKGEIAGVILEPVVGNS
GFIPPTKAFLTGLREVTEQEGALLCFDEVMTGFRISYSGAQGYFGIKPDL
STFGKVIGGGLPVGAYGGRKDIMSLVAPAGPVYQAGTLSGNPLAMTAGIK
TLEIMKRPGSYEYLDKISARLVNGLIDIGKEYGHAVCGGHINGMWGLFFC
DGPVNCFEDVKEKCDFEKFARFHRGMLENGIYLAPSQYEAGFTSLQHTEA
DIDRTLAAARIVMKEL*

spliced messenger RNA

>Gcaud8361.t1 ID=Gcaud8361.t1|Name=Gcaud8361.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:8772..10172- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATTTAAAGTATCGGCGTTCATGACTTCGCTGCCTTTGCGCTCGCA
GCCTTTGGCAAACTGCTCGAAACTTTCTTCTCAACGCCCCGTTACCATGG
TTGCCAGTCAGTCATTAAAGACATCTGAATCGCAAAGGGTTCTGCAAGAA
GCCGCTGATCTTATGCCTGGAGGGGTCTCATCGCCTGTGCGAGCGTTCAA
GTCAGTCGGAGGAAATGCGGTCGTTTTTGATTCTGTAAAAGGCTCAAAGG
CGTATGATATCGATGGCAATGAATACATCGACTACATTGGGTCATGGGGC
CCAGCAATTGTGGGAGCCGCGAATGAAGAGGTTACGGCGGCACTACAAGA
AGCTCTCAAAAAGGGCACCAGTTTTGGAGCTCCCAGCGTTTTAGAAAATG
AGTTGGCGAAGATGGTTATTGACGCTGTCCCGAGTGTGGAGATGGTTCGT
TTTGTCAATTCTGGCACGGAGGCTTGCATGAGCGTCGTACGGGTCATGCG
TGCTTTCACGCAACGGCAGAAAATCATAAAGTTCTCCGGTTGCTACCATG
GCCATGCGGATATGTACCTTGTTCAGGCTGGATCGGGTGTCCTGACGCTC
GGTCTTCCTGACTCTCCAGGAGTGCCGAAGGCATCCACAGAAACCACACT
CGTTGCCAAATACAACGATTTGGACTCAGTCAAGGCCGTTTTTGAACAGA
ACAAGGGGGAGATTGCGGGCGTTATTCTAGAGCCCGTTGTGGGAAACTCT
GGTTTCATTCCACCAACGAAGGCGTTCCTTACTGGTCTCAGGGAGGTCAC
AGAACAAGAAGGAGCTTTGTTGTGTTTTGACGAAGTCATGACCGGCTTCC
GCATCTCATACAGTGGCGCCCAGGGTTATTTTGGAATCAAACCAGATCTC
TCTACGTTTGGAAAGGTCATCGGCGGTGGTCTTCCTGTTGGTGCTTATGG
AGGCCGCAAAGATATAATGAGTTTGGTTGCTCCCGCGGGCCCTGTTTATC
AAGCAGGTACTCTAAGTGGCAACCCACTTGCAATGACCGCAGGTATTAAG
ACTCTCGAGATCATGAAGAGACCTGGCAGCTACGAATATTTGGATAAGAT
TTCCGCCCGCCTCGTCAACGGCTTAATAGATATAGGGAAAGAGTATGGAC
ATGCGGTGTGCGGTGGTCATATTAACGGTATGTGGGGTCTATTCTTCTGT
GATGGGCCAGTTAATTGTTTCGAAGATGTGAAGGAAAAATGCGACTTTGA
GAAGTTCGCTCGTTTCCATCGCGGGATGTTGGAGAACGGTATTTACTTGG
CTCCATCGCAGTATGAAGCGGGTTTCACTAGTTTGCAACATACTGAGGCT
GATATCGATAGGACTCTCGCCGCAGCTCGAATCGTGATGAAAGAGCTCTA
G

protein sequence of Gcaud8361.t1

>Gcaud8361.t1 ID=Gcaud8361.t1|Name=Gcaud8361.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=467bp
MTFKVSAFMTSLPLRSQPLANCSKLSSQRPVTMVASQSLKTSESQRVLQE
AADLMPGGVSSPVRAFKSVGGNAVVFDSVKGSKAYDIDGNEYIDYIGSWG
PAIVGAANEEVTAALQEALKKGTSFGAPSVLENELAKMVIDAVPSVEMVR
FVNSGTEACMSVVRVMRAFTQRQKIIKFSGCYHGHADMYLVQAGSGVLTL
GLPDSPGVPKASTETTLVAKYNDLDSVKAVFEQNKGEIAGVILEPVVGNS
GFIPPTKAFLTGLREVTEQEGALLCFDEVMTGFRISYSGAQGYFGIKPDL
STFGKVIGGGLPVGAYGGRKDIMSLVAPAGPVYQAGTLSGNPLAMTAGIK
TLEIMKRPGSYEYLDKISARLVNGLIDIGKEYGHAVCGGHINGMWGLFFC
DGPVNCFEDVKEKCDFEKFARFHRGMLENGIYLAPSQYEAGFTSLQHTEA
DIDRTLAAARIVMKEL*

mRNA from alignment at NODE_163_length_42078_cov_4.640103:8772..10172-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8361.t1 ID=Gcaud8361.t1|Name=Gcaud8361.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:8772..10172- (Gracilaria caudata M_176_S67 male)
ATGACATTTAAAGTATCGGCGTTCATGACTTCGCTGCCTTTGCGCTCGCA
GCCTTTGGCAAACTGCTCGAAACTTTCTTCTCAACGCCCCGTTACCATGG
TTGCCAGTCAGTCATTAAAGACATCTGAATCGCAAAGGGTTCTGCAAGAA
GCCGCTGATCTTATGCCTGGAGGGGTCTCATCGCCTGTGCGAGCGTTCAA
GTCAGTCGGAGGAAATGCGGTCGTTTTTGATTCTGTAAAAGGCTCAAAGG
CGTATGATATCGATGGCAATGAATACATCGACTACATTGGGTCATGGGGC
CCAGCAATTGTGGGAGCCGCGAATGAAGAGGTTACGGCGGCACTACAAGA
AGCTCTCAAAAAGGGCACCAGTTTTGGAGCTCCCAGCGTTTTAGAAAATG
AGTTGGCGAAGATGGTTATTGACGCTGTCCCGAGTGTGGAGATGGTTCGT
TTTGTCAATTCTGGCACGGAGGCTTGCATGAGCGTCGTACGGGTCATGCG
TGCTTTCACGCAACGGCAGAAAATCATAAAGTTCTCCGGTTGCTACCATG
GCCATGCGGATATGTACCTTGTTCAGGCTGGATCGGGTGTCCTGACGCTC
GGTCTTCCTGACTCTCCAGGAGTGCCGAAGGCATCCACAGAAACCACACT
CGTTGCCAAATACAACGATTTGGACTCAGTCAAGGCCGTTTTTGAACAGA
ACAAGGGGGAGATTGCGGGCGTTATTCTAGAGCCCGTTGTGGGAAACTCT
GGTTTCATTCCACCAACGAAGGCGTTCCTTACTGGTCTCAGGGAGGTCAC
AGAACAAGAAGGAGCTTTGTTGTGTTTTGACGAAGTCATGACCGGCTTCC
GCATCTCATACAGTGGCGCCCAGGGTTATTTTGGAATCAAACCAGATCTC
TCTACGTTTGGAAAGGTCATCGGCGGTGGTCTTCCTGTTGGTGCTTATGG
AGGCCGCAAAGATATAATGAGTTTGGTTGCTCCCGCGGGCCCTGTTTATC
AAGCAGGTACTCTAAGTGGCAACCCACTTGCAATGACCGCAGGTATTAAG
ACTCTCGAGATCATGAAGAGACCTGGCAGCTACGAATATTTGGATAAGAT
TTCCGCCCGCCTCGTCAACGGCTTAATAGATATAGGGAAAGAGTATGGAC
ATGCGGTGTGCGGTGGTCATATTAACGGTATGTGGGGTCTATTCTTCTGT
GATGGGCCAGTTAATTGTTTCGAAGATGTGAAGGAAAAATGCGACTTTGA
GAAGTTCGCTCGTTTCCATCGCGGGATGTTGGAGAACGGTATTTACTTGG
CTCCATCGCAGTATGAAGCGGGTTTCACTAGTTTGCAACATACTGAGGCT
GATATCGATAGGACTCTCGCCGCAGCTCGAATCGTGATGAAAGAGCTCTA
G

Coding sequence (CDS) from alignment at NODE_163_length_42078_cov_4.640103:8772..10172-

>Gcaud8361.t1 ID=Gcaud8361.t1|Name=Gcaud8361.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1401bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:8772..10172- (Gracilaria caudata M_176_S67 male)
ATGACATTTAAAGTATCGGCGTTCATGACTTCGCTGCCTTTGCGCTCGCA
GCCTTTGGCAAACTGCTCGAAACTTTCTTCTCAACGCCCCGTTACCATGG
TTGCCAGTCAGTCATTAAAGACATCTGAATCGCAAAGGGTTCTGCAAGAA
GCCGCTGATCTTATGCCTGGAGGGGTCTCATCGCCTGTGCGAGCGTTCAA
GTCAGTCGGAGGAAATGCGGTCGTTTTTGATTCTGTAAAAGGCTCAAAGG
CGTATGATATCGATGGCAATGAATACATCGACTACATTGGGTCATGGGGC
CCAGCAATTGTGGGAGCCGCGAATGAAGAGGTTACGGCGGCACTACAAGA
AGCTCTCAAAAAGGGCACCAGTTTTGGAGCTCCCAGCGTTTTAGAAAATG
AGTTGGCGAAGATGGTTATTGACGCTGTCCCGAGTGTGGAGATGGTTCGT
TTTGTCAATTCTGGCACGGAGGCTTGCATGAGCGTCGTACGGGTCATGCG
TGCTTTCACGCAACGGCAGAAAATCATAAAGTTCTCCGGTTGCTACCATG
GCCATGCGGATATGTACCTTGTTCAGGCTGGATCGGGTGTCCTGACGCTC
GGTCTTCCTGACTCTCCAGGAGTGCCGAAGGCATCCACAGAAACCACACT
CGTTGCCAAATACAACGATTTGGACTCAGTCAAGGCCGTTTTTGAACAGA
ACAAGGGGGAGATTGCGGGCGTTATTCTAGAGCCCGTTGTGGGAAACTCT
GGTTTCATTCCACCAACGAAGGCGTTCCTTACTGGTCTCAGGGAGGTCAC
AGAACAAGAAGGAGCTTTGTTGTGTTTTGACGAAGTCATGACCGGCTTCC
GCATCTCATACAGTGGCGCCCAGGGTTATTTTGGAATCAAACCAGATCTC
TCTACGTTTGGAAAGGTCATCGGCGGTGGTCTTCCTGTTGGTGCTTATGG
AGGCCGCAAAGATATAATGAGTTTGGTTGCTCCCGCGGGCCCTGTTTATC
AAGCAGGTACTCTAAGTGGCAACCCACTTGCAATGACCGCAGGTATTAAG
ACTCTCGAGATCATGAAGAGACCTGGCAGCTACGAATATTTGGATAAGAT
TTCCGCCCGCCTCGTCAACGGCTTAATAGATATAGGGAAAGAGTATGGAC
ATGCGGTGTGCGGTGGTCATATTAACGGTATGTGGGGTCTATTCTTCTGT
GATGGGCCAGTTAATTGTTTCGAAGATGTGAAGGAAAAATGCGACTTTGA
GAAGTTCGCTCGTTTCCATCGCGGGATGTTGGAGAACGGTATTTACTTGG
CTCCATCGCAGTATGAAGCGGGTTTCACTAGTTTGCAACATACTGAGGCT
GATATCGATAGGACTCTCGCCGCAGCTCGAATCGTGATGAAAGAGCTCTA
G