Gcaud8328.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8328.t1
Unique Name	Gcaud8328.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	280

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_345_length_29203_cov_4.997492	contig	NODE_345_length_29203_cov_4.997492:22038..22877 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8328	Gcaud8328	Gracilaria caudata M_176_S67 male	gene	NODE_345_length_29203_cov_4.997492 22038..22877 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8328.t1.start1	Gcaud8328.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_345_length_29203_cov_4.997492 22038..22040 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8328.t1.CDS1	Gcaud8328.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_345_length_29203_cov_4.997492 22038..22877 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8328.t1.exon1	Gcaud8328.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_345_length_29203_cov_4.997492 22038..22877 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8328.t1.stop1	Gcaud8328.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_345_length_29203_cov_4.997492 22875..22877 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8328.t1	Gcaud8328.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_345_length_29203_cov_4.997492 22038..22877 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_345_length_29203_cov_4.997492:22038..22877+
coding sequence from alignment at NODE_345_length_29203_cov_4.997492:22038..22877+

mRNA sequence

>Gcaud8328.t1 ID=Gcaud8328.t1|Name=Gcaud8328.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=280bp
MIPTKRINHTCVLIAFALHIGCSQARSVFTDKVCTPSNCPNSATPPTDNG
RSLGNKASGAFKGYVDTWASNGASTFTTDMMVTSSQAWPRISEGTTTQQH
TAGYPISVADYLALRGGRYISYNGWWAKRTNGPNAGKSPRGARYNGAYIW
LNHANNFRSDGKTPIWPYTIEINVWNRHDNGIRSGAKRTADYYDSNGRYE
VWGHDVNAEGDKFYAYYVILKDKTTTDMVLNVKALLRHLLDTTDRLKSWH
QLIEICVAAEGHSGADAKFGADINTMGRP*

spliced messenger RNA

>Gcaud8328.t1 ID=Gcaud8328.t1|Name=Gcaud8328.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=840bp|location=Sequence derived from alignment at NODE_345_length_29203_cov_4.997492:22038..22877+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCCCACAAAACGCATCAATCATACATGTGTGCTCATAGCTTTTGC
TCTGCACATTGGCTGCTCACAGGCACGTTCGGTGTTCACAGACAAAGTTT
GCACGCCATCAAACTGTCCGAATTCCGCCACGCCTCCCACAGACAATGGC
CGCTCACTTGGAAACAAGGCATCAGGCGCGTTCAAGGGATACGTGGATAC
ATGGGCAAGTAACGGCGCCTCTACGTTCACAACGGATATGATGGTAACAT
CGTCTCAAGCGTGGCCGCGAATCTCAGAAGGAACCACTACTCAACAGCAT
ACAGCGGGTTACCCAATCTCTGTTGCGGACTACCTTGCACTTAGAGGGGG
TCGATATATCTCGTACAACGGTTGGTGGGCAAAGAGAACAAATGGACCTA
ATGCTGGGAAATCACCGCGCGGAGCAAGGTACAATGGCGCGTATATCTGG
TTGAATCACGCAAACAACTTTAGGTCGGATGGAAAGACTCCTATTTGGCC
GTATACGATTGAGATCAATGTGTGGAACCGACATGATAATGGCATTCGAT
CAGGTGCAAAAAGAACCGCAGACTATTATGATAGCAATGGACGGTATGAA
GTGTGGGGACATGATGTGAATGCTGAGGGTGATAAGTTCTATGCTTATTA
TGTAATCCTGAAGGATAAGACCACCACGGATATGGTGCTCAACGTGAAGG
CTCTTTTGCGTCATCTTCTTGATACCACAGATAGGTTGAAGAGCTGGCAT
CAGTTGATTGAAATCTGCGTGGCGGCGGAAGGACATTCCGGCGCTGATGC
GAAGTTCGGGGCGGACATCAATACCATGGGACGCCCTTGA

protein sequence of Gcaud8328.t1

>Gcaud8328.t1 ID=Gcaud8328.t1|Name=Gcaud8328.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=280bp
MIPTKRINHTCVLIAFALHIGCSQARSVFTDKVCTPSNCPNSATPPTDNG
RSLGNKASGAFKGYVDTWASNGASTFTTDMMVTSSQAWPRISEGTTTQQH
TAGYPISVADYLALRGGRYISYNGWWAKRTNGPNAGKSPRGARYNGAYIW
LNHANNFRSDGKTPIWPYTIEINVWNRHDNGIRSGAKRTADYYDSNGRYE
VWGHDVNAEGDKFYAYYVILKDKTTTDMVLNVKALLRHLLDTTDRLKSWH
QLIEICVAAEGHSGADAKFGADINTMGRP*

mRNA from alignment at NODE_345_length_29203_cov_4.997492:22038..22877+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8328.t1 ID=Gcaud8328.t1|Name=Gcaud8328.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=840bp|location=Sequence derived from alignment at NODE_345_length_29203_cov_4.997492:22038..22877+ (Gracilaria caudata M_176_S67 male)
ATGATTCCCACAAAACGCATCAATCATACATGTGTGCTCATAGCTTTTGC
TCTGCACATTGGCTGCTCACAGGCACGTTCGGTGTTCACAGACAAAGTTT
GCACGCCATCAAACTGTCCGAATTCCGCCACGCCTCCCACAGACAATGGC
CGCTCACTTGGAAACAAGGCATCAGGCGCGTTCAAGGGATACGTGGATAC
ATGGGCAAGTAACGGCGCCTCTACGTTCACAACGGATATGATGGTAACAT
CGTCTCAAGCGTGGCCGCGAATCTCAGAAGGAACCACTACTCAACAGCAT
ACAGCGGGTTACCCAATCTCTGTTGCGGACTACCTTGCACTTAGAGGGGG
TCGATATATCTCGTACAACGGTTGGTGGGCAAAGAGAACAAATGGACCTA
ATGCTGGGAAATCACCGCGCGGAGCAAGGTACAATGGCGCGTATATCTGG
TTGAATCACGCAAACAACTTTAGGTCGGATGGAAAGACTCCTATTTGGCC
GTATACGATTGAGATCAATGTGTGGAACCGACATGATAATGGCATTCGAT
CAGGTGCAAAAAGAACCGCAGACTATTATGATAGCAATGGACGGTATGAA
GTGTGGGGACATGATGTGAATGCTGAGGGTGATAAGTTCTATGCTTATTA
TGTAATCCTGAAGGATAAGACCACCACGGATATGGTGCTCAACGTGAAGG
CTCTTTTGCGTCATCTTCTTGATACCACAGATAGGTTGAAGAGCTGGCAT
CAGTTGATTGAAATCTGCGTGGCGGCGGAAGGACATTCCGGCGCTGATGC
GAAGTTCGGGGCGGACATCAATACCATGGGACGCCCTTGA

Coding sequence (CDS) from alignment at NODE_345_length_29203_cov_4.997492:22038..22877+

>Gcaud8328.t1 ID=Gcaud8328.t1|Name=Gcaud8328.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=840bp|location=Sequence derived from alignment at NODE_345_length_29203_cov_4.997492:22038..22877+ (Gracilaria caudata M_176_S67 male)
ATGATTCCCACAAAACGCATCAATCATACATGTGTGCTCATAGCTTTTGC
TCTGCACATTGGCTGCTCACAGGCACGTTCGGTGTTCACAGACAAAGTTT
GCACGCCATCAAACTGTCCGAATTCCGCCACGCCTCCCACAGACAATGGC
CGCTCACTTGGAAACAAGGCATCAGGCGCGTTCAAGGGATACGTGGATAC
ATGGGCAAGTAACGGCGCCTCTACGTTCACAACGGATATGATGGTAACAT
CGTCTCAAGCGTGGCCGCGAATCTCAGAAGGAACCACTACTCAACAGCAT
ACAGCGGGTTACCCAATCTCTGTTGCGGACTACCTTGCACTTAGAGGGGG
TCGATATATCTCGTACAACGGTTGGTGGGCAAAGAGAACAAATGGACCTA
ATGCTGGGAAATCACCGCGCGGAGCAAGGTACAATGGCGCGTATATCTGG
TTGAATCACGCAAACAACTTTAGGTCGGATGGAAAGACTCCTATTTGGCC
GTATACGATTGAGATCAATGTGTGGAACCGACATGATAATGGCATTCGAT
CAGGTGCAAAAAGAACCGCAGACTATTATGATAGCAATGGACGGTATGAA
GTGTGGGGACATGATGTGAATGCTGAGGGTGATAAGTTCTATGCTTATTA
TGTAATCCTGAAGGATAAGACCACCACGGATATGGTGCTCAACGTGAAGG
CTCTTTTGCGTCATCTTCTTGATACCACAGATAGGTTGAAGAGCTGGCAT
CAGTTGATTGAAATCTGCGTGGCGGCGGAAGGACATTCCGGCGCTGATGC
GAAGTTCGGGGCGGACATCAATACCATGGGACGCCCTTGA