Gcaud8327.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8327.t1
Unique Name	Gcaud8327.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	578

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_345_length_29203_cov_4.997492	contig	NODE_345_length_29203_cov_4.997492:16631..18364 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	164328.Phyra77523
PFAMs	Laminin_G_3,Sel1
Max annot lvl	4776\|Peronosporales
KEGG ko	ko:K14026
KEGG Pathway	ko04141,map04141
KEGG Module	M00403
Evalue	3.01e-06
EggNOG OGs	COG0790@1\|root,KOG1550@2759\|Eukaryota,3Q76R@4776\|Peronosporales
Description	Concanavalin A-like lectin/glucanases superfamily
COG category	MOT
BRITE	ko00000,ko00001,ko00002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8327	Gcaud8327	Gracilaria caudata M_176_S67 male	gene	NODE_345_length_29203_cov_4.997492 16631..18364 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8327.t1.start1	Gcaud8327.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_345_length_29203_cov_4.997492 16631..16633 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8327.t1.CDS1	Gcaud8327.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_345_length_29203_cov_4.997492 16631..18364 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8327.t1.exon1	Gcaud8327.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_345_length_29203_cov_4.997492 16631..18364 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8327.t1.stop1	Gcaud8327.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_345_length_29203_cov_4.997492 18362..18364 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8327.t1	Gcaud8327.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_345_length_29203_cov_4.997492 16631..18364 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_345_length_29203_cov_4.997492:16631..18364+
coding sequence from alignment at NODE_345_length_29203_cov_4.997492:16631..18364+

mRNA sequence

>Gcaud8327.t1 ID=Gcaud8327.t1|Name=Gcaud8327.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=578bp
MHVGSPTPLHSAAHLLPNGAVAQRLTAAQSVVEQSLRTAQHAIDNNAKNV
VHRRRRLPTFSSDDFVGLTRRRRSSDLSHLQSDILPSENKGLTKIDVWSV
GWIMYYMATGRHPPTDAWARTNIADELDWSAVPLECRPIIRMCIQTDKER
RASLREVKRKIDSTLQALMFAKGLALLDSEKSAAFMLLDKAVGIKSVHAA
SHTSSSVTAMKPPISPTSVAAAFGGDDNEPGTFVRDAELQPLADLDDAAV
GDDDVDDDVDDGEEGEEQRHHKVLGLNDKTRVALAALPLCVVRRVEWEAA
AHYLRRSDEEIRALRSALMTEKWNKNDVRNGAAAIDYLKKRSLERVSSAQ
SALGWVYRWGAGGSLKNVSAAMREWEKAVAASGDPEACNGLGLLYHHGRN
DVGVDGERARYYYQIAVDQGYPPAAVNLGVMLHDGAAGLEPDGVAARGLY
EIASRHGDAIAANNLGLLLRHGAPGVEIDAPAAVRAYELAIERQERHHAC
RNLAELLWEGAAGVAPARANAVEYFAMAISRGDAGSKKAACSALRQLLQT
SLKNREHISNALIDKCSRLLGEGRGGN*

spliced messenger RNA

>Gcaud8327.t1 ID=Gcaud8327.t1|Name=Gcaud8327.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1734bp|location=Sequence derived from alignment at NODE_345_length_29203_cov_4.997492:16631..18364+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGTGGGCTCGCCCACCCCGCTGCACTCCGCCGCCCATCTGCTGCC
CAACGGCGCCGTGGCGCAGCGCCTCACCGCCGCGCAGAGCGTCGTGGAAC
AGTCGCTGCGCACCGCGCAGCATGCCATTGATAACAATGCCAAGAACGTG
GTGCATCGCCGCCGCCGCCTGCCCACCTTCTCCAGTGACGACTTTGTCGG
CCTCACGCGCCGCCGCCGCTCGTCGGACCTGTCGCATCTGCAGTCGGACA
TTTTGCCCTCGGAGAACAAGGGTCTCACCAAGATTGACGTGTGGAGCGTC
GGCTGGATCATGTACTATATGGCCACCGGGAGACACCCGCCCACCGATGC
GTGGGCGCGCACCAACATTGCCGACGAGCTGGATTGGAGCGCCGTGCCGC
TGGAATGCAGGCCTATTATTCGCATGTGCATTCAGACCGATAAGGAGAGG
CGCGCGTCGTTGCGCGAGGTGAAGAGGAAGATCGATTCTACGCTGCAGGC
GCTCATGTTTGCCAAGGGGCTGGCGCTGTTGGACAGCGAGAAGAGCGCCG
CTTTTATGCTGCTGGACAAGGCGGTGGGTATCAAATCCGTGCACGCCGCC
TCACACACATCCTCCTCTGTTACCGCCATGAAGCCGCCCATCTCGCCCAC
CTCTGTTGCCGCGGCGTTTGGGGGCGACGACAATGAACCGGGCACCTTTG
TTCGCGACGCGGAACTGCAGCCGCTGGCTGATCTcgacgacgcagcggtg
ggtgatgatgatgttgatgatgatgttgatgatggggaggaaggggagga
gcagagGCACCACAAAGTGCTTGGGCTCAACGACAAGACGCGAGTTGCTC
TTGCGGCTCTGCCTTTGTGCGTAGTCAGAAGGGTGGAATGGGAGGCTGCG
GCGCACTACTTGCGTCGCTCCGATGAGGAGATCAGGGCGCTGCGCAGCGC
GCTCATGACCGAAAAGTGGAACAAGAACGACGTGAGGAATGGAGCCGCGG
CTATTGACTACCTGAAAAAGCGCAGCCTCGAGAGGGTGTCCTCCGCGCAG
AGTGCGCTCGGCTGGGTGTATCGTTGGGGCGCTGGGGGCAGCCTCAAGAA
CGTGTCAGCGGCGATGCGCGAATGGGAAAAGGCGGTCGCTGCCTCGGGCG
ACCCGGAGGCGTGCAATGGGCTGGGGCTGTTGTATCACCATGGCCGAAAC
GATGTCGGCGTGGATGGGGAAAGGGCTCGCTACTACTACCAGATTGCAGT
GGATCAGGGATATCCGCCTGCTGCAGTGAACCTGGGAGTGATGCTTCACG
ACGGCGCCGCCGGTCTCGAGCCGGACGGCGTTGCGGCGCGGGGTCTGTAT
GAAATTGCGTCGCGACATGGCGACGCAATTGCCGCAAACAATTTGGGTCT
GCTGCTTCGGCATGGTGCTCCGGGCGTGGAGATTGACGCTCCTGCCGCCG
TTCGCGCGTACGAGCTGGCAATTGAAAGACAGGAGCGTCATCATGCGTGC
AGGAATTTGGCCGAGCTGTTGTGGGAAGGCGCCGCGGGAGTTGCTCCGGC
GCGTGCCAATGCGGTGGAATACTTTGCGATGGCCATTTCAAGAGGGGACG
CGGGATCGAAGAAGGCGGCGTGTAGCGCGCTGAGACAGCTGCTACAAACG
TCCCTCAAGAATAGGGAACACATTTCAAATGCACTCATCGACAAGTGCAG
TCGGTTACTTGGCGAAGGACGCGGTGGAAACTGA

protein sequence of Gcaud8327.t1

>Gcaud8327.t1 ID=Gcaud8327.t1|Name=Gcaud8327.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=578bp
MHVGSPTPLHSAAHLLPNGAVAQRLTAAQSVVEQSLRTAQHAIDNNAKNV
VHRRRRLPTFSSDDFVGLTRRRRSSDLSHLQSDILPSENKGLTKIDVWSV
GWIMYYMATGRHPPTDAWARTNIADELDWSAVPLECRPIIRMCIQTDKER
RASLREVKRKIDSTLQALMFAKGLALLDSEKSAAFMLLDKAVGIKSVHAA
SHTSSSVTAMKPPISPTSVAAAFGGDDNEPGTFVRDAELQPLADLDDAAV
GDDDVDDDVDDGEEGEEQRHHKVLGLNDKTRVALAALPLCVVRRVEWEAA
AHYLRRSDEEIRALRSALMTEKWNKNDVRNGAAAIDYLKKRSLERVSSAQ
SALGWVYRWGAGGSLKNVSAAMREWEKAVAASGDPEACNGLGLLYHHGRN
DVGVDGERARYYYQIAVDQGYPPAAVNLGVMLHDGAAGLEPDGVAARGLY
EIASRHGDAIAANNLGLLLRHGAPGVEIDAPAAVRAYELAIERQERHHAC
RNLAELLWEGAAGVAPARANAVEYFAMAISRGDAGSKKAACSALRQLLQT
SLKNREHISNALIDKCSRLLGEGRGGN*

mRNA from alignment at NODE_345_length_29203_cov_4.997492:16631..18364+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8327.t1 ID=Gcaud8327.t1|Name=Gcaud8327.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1734bp|location=Sequence derived from alignment at NODE_345_length_29203_cov_4.997492:16631..18364+ (Gracilaria caudata M_176_S67 male)
ATGCACGTGGGCTCGCCCACCCCGCTGCACTCCGCCGCCCATCTGCTGCC
CAACGGCGCCGTGGCGCAGCGCCTCACCGCCGCGCAGAGCGTCGTGGAAC
AGTCGCTGCGCACCGCGCAGCATGCCATTGATAACAATGCCAAGAACGTG
GTGCATCGCCGCCGCCGCCTGCCCACCTTCTCCAGTGACGACTTTGTCGG
CCTCACGCGCCGCCGCCGCTCGTCGGACCTGTCGCATCTGCAGTCGGACA
TTTTGCCCTCGGAGAACAAGGGTCTCACCAAGATTGACGTGTGGAGCGTC
GGCTGGATCATGTACTATATGGCCACCGGGAGACACCCGCCCACCGATGC
GTGGGCGCGCACCAACATTGCCGACGAGCTGGATTGGAGCGCCGTGCCGC
TGGAATGCAGGCCTATTATTCGCATGTGCATTCAGACCGATAAGGAGAGG
CGCGCGTCGTTGCGCGAGGTGAAGAGGAAGATCGATTCTACGCTGCAGGC
GCTCATGTTTGCCAAGGGGCTGGCGCTGTTGGACAGCGAGAAGAGCGCCG
CTTTTATGCTGCTGGACAAGGCGGTGGGTATCAAATCCGTGCACGCCGCC
TCACACACATCCTCCTCTGTTACCGCCATGAAGCCGCCCATCTCGCCCAC
CTCTGTTGCCGCGGCGTTTGGGGGCGACGACAATGAACCGGGCACCTTTG
TTCGCGACGCGGAACTGCAGCCGCTGGCTGATCTcgacgacgcagcggtg
ggtgatgatgatgttgatgatgatgttgatgatggggaggaaggggagga
gcagagGCACCACAAAGTGCTTGGGCTCAACGACAAGACGCGAGTTGCTC
TTGCGGCTCTGCCTTTGTGCGTAGTCAGAAGGGTGGAATGGGAGGCTGCG
GCGCACTACTTGCGTCGCTCCGATGAGGAGATCAGGGCGCTGCGCAGCGC
GCTCATGACCGAAAAGTGGAACAAGAACGACGTGAGGAATGGAGCCGCGG
CTATTGACTACCTGAAAAAGCGCAGCCTCGAGAGGGTGTCCTCCGCGCAG
AGTGCGCTCGGCTGGGTGTATCGTTGGGGCGCTGGGGGCAGCCTCAAGAA
CGTGTCAGCGGCGATGCGCGAATGGGAAAAGGCGGTCGCTGCCTCGGGCG
ACCCGGAGGCGTGCAATGGGCTGGGGCTGTTGTATCACCATGGCCGAAAC
GATGTCGGCGTGGATGGGGAAAGGGCTCGCTACTACTACCAGATTGCAGT
GGATCAGGGATATCCGCCTGCTGCAGTGAACCTGGGAGTGATGCTTCACG
ACGGCGCCGCCGGTCTCGAGCCGGACGGCGTTGCGGCGCGGGGTCTGTAT
GAAATTGCGTCGCGACATGGCGACGCAATTGCCGCAAACAATTTGGGTCT
GCTGCTTCGGCATGGTGCTCCGGGCGTGGAGATTGACGCTCCTGCCGCCG
TTCGCGCGTACGAGCTGGCAATTGAAAGACAGGAGCGTCATCATGCGTGC
AGGAATTTGGCCGAGCTGTTGTGGGAAGGCGCCGCGGGAGTTGCTCCGGC
GCGTGCCAATGCGGTGGAATACTTTGCGATGGCCATTTCAAGAGGGGACG
CGGGATCGAAGAAGGCGGCGTGTAGCGCGCTGAGACAGCTGCTACAAACG
TCCCTCAAGAATAGGGAACACATTTCAAATGCACTCATCGACAAGTGCAG
TCGGTTACTTGGCGAAGGACGCGGTGGAAACTGA

Coding sequence (CDS) from alignment at NODE_345_length_29203_cov_4.997492:16631..18364+

>Gcaud8327.t1 ID=Gcaud8327.t1|Name=Gcaud8327.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1734bp|location=Sequence derived from alignment at NODE_345_length_29203_cov_4.997492:16631..18364+ (Gracilaria caudata M_176_S67 male)
ATGCACGTGGGCTCGCCCACCCCGCTGCACTCCGCCGCCCATCTGCTGCC
CAACGGCGCCGTGGCGCAGCGCCTCACCGCCGCGCAGAGCGTCGTGGAAC
AGTCGCTGCGCACCGCGCAGCATGCCATTGATAACAATGCCAAGAACGTG
GTGCATCGCCGCCGCCGCCTGCCCACCTTCTCCAGTGACGACTTTGTCGG
CCTCACGCGCCGCCGCCGCTCGTCGGACCTGTCGCATCTGCAGTCGGACA
TTTTGCCCTCGGAGAACAAGGGTCTCACCAAGATTGACGTGTGGAGCGTC
GGCTGGATCATGTACTATATGGCCACCGGGAGACACCCGCCCACCGATGC
GTGGGCGCGCACCAACATTGCCGACGAGCTGGATTGGAGCGCCGTGCCGC
TGGAATGCAGGCCTATTATTCGCATGTGCATTCAGACCGATAAGGAGAGG
CGCGCGTCGTTGCGCGAGGTGAAGAGGAAGATCGATTCTACGCTGCAGGC
GCTCATGTTTGCCAAGGGGCTGGCGCTGTTGGACAGCGAGAAGAGCGCCG
CTTTTATGCTGCTGGACAAGGCGGTGGGTATCAAATCCGTGCACGCCGCC
TCACACACATCCTCCTCTGTTACCGCCATGAAGCCGCCCATCTCGCCCAC
CTCTGTTGCCGCGGCGTTTGGGGGCGACGACAATGAACCGGGCACCTTTG
TTCGCGACGCGGAACTGCAGCCGCTGGCTGATCTcgacgacgcagcggtg
ggtgatgatgatgttgatgatgatgttgatgatggggaggaaggggagga
gcagagGCACCACAAAGTGCTTGGGCTCAACGACAAGACGCGAGTTGCTC
TTGCGGCTCTGCCTTTGTGCGTAGTCAGAAGGGTGGAATGGGAGGCTGCG
GCGCACTACTTGCGTCGCTCCGATGAGGAGATCAGGGCGCTGCGCAGCGC
GCTCATGACCGAAAAGTGGAACAAGAACGACGTGAGGAATGGAGCCGCGG
CTATTGACTACCTGAAAAAGCGCAGCCTCGAGAGGGTGTCCTCCGCGCAG
AGTGCGCTCGGCTGGGTGTATCGTTGGGGCGCTGGGGGCAGCCTCAAGAA
CGTGTCAGCGGCGATGCGCGAATGGGAAAAGGCGGTCGCTGCCTCGGGCG
ACCCGGAGGCGTGCAATGGGCTGGGGCTGTTGTATCACCATGGCCGAAAC
GATGTCGGCGTGGATGGGGAAAGGGCTCGCTACTACTACCAGATTGCAGT
GGATCAGGGATATCCGCCTGCTGCAGTGAACCTGGGAGTGATGCTTCACG
ACGGCGCCGCCGGTCTCGAGCCGGACGGCGTTGCGGCGCGGGGTCTGTAT
GAAATTGCGTCGCGACATGGCGACGCAATTGCCGCAAACAATTTGGGTCT
GCTGCTTCGGCATGGTGCTCCGGGCGTGGAGATTGACGCTCCTGCCGCCG
TTCGCGCGTACGAGCTGGCAATTGAAAGACAGGAGCGTCATCATGCGTGC
AGGAATTTGGCCGAGCTGTTGTGGGAAGGCGCCGCGGGAGTTGCTCCGGC
GCGTGCCAATGCGGTGGAATACTTTGCGATGGCCATTTCAAGAGGGGACG
CGGGATCGAAGAAGGCGGCGTGTAGCGCGCTGAGACAGCTGCTACAAACG
TCCCTCAAGAATAGGGAACACATTTCAAATGCACTCATCGACAAGTGCAG
TCGGTTACTTGGCGAAGGACGCGGTGGAAACTGA