Gcaud8325.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8325.t1
Unique Name	Gcaud8325.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	540

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_345_length_29203_cov_4.997492	contig	NODE_345_length_29203_cov_4.997492:4709..6500 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704866.1
PFAMs	Pyr_redox_2
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03885,ko:K17871
KEGG Pathway	ko00190,map00190
Evalue	9.02e-147
EggNOG OGs	COG1252@1\|root,KOG2495@2759\|Eukaryota
EC	1.6.5.9,1.6.99.3
Description	Oxidoreductase
COG category	C
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8325	Gcaud8325	Gracilaria caudata M_176_S67 male	gene	NODE_345_length_29203_cov_4.997492 4709..6500 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8325.t1	Gcaud8325.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_345_length_29203_cov_4.997492 4709..6500 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8325.t1.start1	Gcaud8325.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_345_length_29203_cov_4.997492 4709..4711 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8325.t1.CDS1	Gcaud8325.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_345_length_29203_cov_4.997492 4709..6014 +
Gcaud8325.t1.CDS2	Gcaud8325.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_345_length_29203_cov_4.997492 6110..6250 +
Gcaud8325.t1.CDS3	Gcaud8325.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_345_length_29203_cov_4.997492 6328..6500 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8325.t1.exon1	Gcaud8325.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_345_length_29203_cov_4.997492 4709..6014 +
Gcaud8325.t1.exon2	Gcaud8325.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_345_length_29203_cov_4.997492 6110..6250 +
Gcaud8325.t1.exon3	Gcaud8325.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_345_length_29203_cov_4.997492 6328..6500 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8325.t1.intron1	Gcaud8325.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_345_length_29203_cov_4.997492 6015..6109 +
Gcaud8325.t1.intron2	Gcaud8325.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_345_length_29203_cov_4.997492 6251..6327 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8325.t1.stop1	Gcaud8325.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_345_length_29203_cov_4.997492 6498..6500 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_345_length_29203_cov_4.997492:4709..6500+
coding sequence from alignment at NODE_345_length_29203_cov_4.997492:4709..6500+

mRNA sequence

>Gcaud8325.t1 ID=Gcaud8325.t1|Name=Gcaud8325.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=540bp
MSSTCFAFLPPQPLPLRRGRFARAPRCVPRASAKPPVRDTKPATPPATSR
TRAPVPPRPQNLQVVLDRLADTLLDAKIHYSRLFSTAPQQTSPQGPRVVV
LGSGWAAHSFVKVVDHTQFQSVTVVSPRNFFFFTPLLSATAVGTVEFRSI
VEPIRKANPFVDYYEAYAVDVDVERRVVKCEKGQREGVPSANAVCFQIPY
DVLVVAVGETTTTFGVEGANKYGYFLKEISDARRLRNSILDALEKAALPL
WTDQQRKDMLHIVVVGGGPTGCEFAGELSDFVQNDLAPRYGKELVSCIRV
SLLQSGKSLLTQFETSLQQLALRSFSGRVDVQFGARVTDVTGEEVVLQDG
TRIRYGLLVWAAGNGTRPIVNSLMSKLDNDADLDDVPRRKKLPVDGWLRV
IGLRNVFAMGDCAQMVDGALPSTAQVAGQQGAFLARLLSKAEANSFENEE
DLPVLRDSGGRQMRAFSFLSLGIMAYLGNDRAVVQVEATPTKNVAIGGRI
AYALWRSVYAVKQVDVRNRILVLFDYFKSRVYGRDISQF*

spliced messenger RNA

>Gcaud8325.t1 ID=Gcaud8325.t1|Name=Gcaud8325.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1620bp|location=Sequence derived from alignment at NODE_345_length_29203_cov_4.997492:4709..6500+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCCACCTGCTTTGCGTTCCTCCCGCCGCAGCCGCTGCCGCTCCG
TCGCGGCCGCTTCGCCCGCGCGCCTCGCTGCGTGCCGCGCGCCTCCGCCA
AGCCGCCGGTGCGCGACACGAAGCCCGCCACACCGCCCGCCACGAGCAGG
ACCAGAGCGCCGGTGCCGCCGCGCCCGCAGAACTTGCAGGTGGTGCTCGA
CCGTTTGGCCGACACTTTACTCGATGCCAAGATTCATTATTCGCGTCTGT
TCAGTACCGCGCCGCAGCAGACGTCGCCCCAGGGGCCGCGCGTCGTCGTG
TTGGGCTCCGGCTGGGCTGCGCATTCGTTTGTCAAAGTGGTTGATCACAC
GCAGTTTCAGAGCGTCACTGTCGTGTCCCCGAGGAACTTTTTCTTCTTCA
CGCCCTTGTTGAGCGCTACGGCAGTCGGAACTGTCGAGTTTCGCTCCATT
GTGGAGCCCATACGAAAAGCGAATCCGTTTGTTGATTACTATGAGGCGTA
TGCGGTCGATGTGGATGTGGAGCGCCGCGTCGTCAAATGCGAGAAGGGTC
AGAGAGAGGGCGTGCCTTCCGCGAATGCAGTATGTTTCCAGATTCCTTAC
GACGTTCTTGTGGTAGCCGTAGGAGAGACCACCACCACCTTTGGCGTGGA
AGGCGCCAATAAATATGGCTACTTTCTCAAGGAGATCTCAGATGCGAGGC
GTCTTCGAAACAGTATTTTGGATGCCTTGGAGAAGGCTGCTTTGCCTTTA
TGGACTGACCAGCAGCGGAAGGACATGTTGCACATTGTCGTCGTGGGTGG
TGGACCCACTGGATGCGAGTTTGCCGGAGAACTGTCTGACTTTGTCCAAA
ATGACCTCGCACCGCGATATGGCAAGGAGCTTGTGTCTTGCATTCGTGTG
TCGTTGCTGCAATCGGGAAAGTCTTTATTGACGCAGTTTGAAACATCCTT
GCAGCAGTTGGCGTTGCGCTCGTTTTCTGGACGAGTTGACGTGCAGTTTG
GTGCGAGGGTGACTGATGTGACCGGCGAAGAAGTGGTGTTACAGGATGGC
ACCAGAATTCGATATGGTTTATTGGTGTGGGCCGCTGGTAATGGTACCAG
ACCTATTGTGAACTCGCTCATGTCCAAGCTGGATAACGATGCCGATTTGG
ATGACGTGCCGCGGAGAAAGAAGTTACCGGTGGATGGATGGTTGCGAGTG
ATTGGATTGAGGAATGTGTTTGCGATGGGAGATTGCGCACAGATGGTTGA
CGGCGCGCTGCCTAGTACCGCACAAGTTGCTGGTCAACAAGGCGCTTTTC
TTGCAAGATTGCTTTCGAAGGCTGAAGCGAACAGCTTTGAGAACGAGGAG
GACCTTCCGGTGCTGCGAGACTCGGGCGGCAGACAGATGAGGGCATTCAG
TTTTTTATCTTTGGGCATCATGGCATATCTTGGAAACGACCGTGCAGTTG
TTCAGGTGGAGGCTACACCGACGAAGAACGTAGCAATTGGAGGTCGCATA
GCTTATGCTCTGTGGCGAAGCGTGTACGCTGTGAAGCAGGTGGACGTTCG
AAATCGCATTCTTGTGCTGTTTGATTACTTCAAGAGTCGCGTATACGGAC
GTGACATTTCGCAGTTCTGA

protein sequence of Gcaud8325.t1

>Gcaud8325.t1 ID=Gcaud8325.t1|Name=Gcaud8325.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=540bp
MSSTCFAFLPPQPLPLRRGRFARAPRCVPRASAKPPVRDTKPATPPATSR
TRAPVPPRPQNLQVVLDRLADTLLDAKIHYSRLFSTAPQQTSPQGPRVVV
LGSGWAAHSFVKVVDHTQFQSVTVVSPRNFFFFTPLLSATAVGTVEFRSI
VEPIRKANPFVDYYEAYAVDVDVERRVVKCEKGQREGVPSANAVCFQIPY
DVLVVAVGETTTTFGVEGANKYGYFLKEISDARRLRNSILDALEKAALPL
WTDQQRKDMLHIVVVGGGPTGCEFAGELSDFVQNDLAPRYGKELVSCIRV
SLLQSGKSLLTQFETSLQQLALRSFSGRVDVQFGARVTDVTGEEVVLQDG
TRIRYGLLVWAAGNGTRPIVNSLMSKLDNDADLDDVPRRKKLPVDGWLRV
IGLRNVFAMGDCAQMVDGALPSTAQVAGQQGAFLARLLSKAEANSFENEE
DLPVLRDSGGRQMRAFSFLSLGIMAYLGNDRAVVQVEATPTKNVAIGGRI
AYALWRSVYAVKQVDVRNRILVLFDYFKSRVYGRDISQF*

mRNA from alignment at NODE_345_length_29203_cov_4.997492:4709..6500+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8325.t1 ID=Gcaud8325.t1|Name=Gcaud8325.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1792bp|location=Sequence derived from alignment at NODE_345_length_29203_cov_4.997492:4709..6500+ (Gracilaria caudata M_176_S67 male)
ATGAGCTCCACCTGCTTTGCGTTCCTCCCGCCGCAGCCGCTGCCGCTCCG
TCGCGGCCGCTTCGCCCGCGCGCCTCGCTGCGTGCCGCGCGCCTCCGCCA
AGCCGCCGGTGCGCGACACGAAGCCCGCCACACCGCCCGCCACGAGCAGG
ACCAGAGCGCCGGTGCCGCCGCGCCCGCAGAACTTGCAGGTGGTGCTCGA
CCGTTTGGCCGACACTTTACTCGATGCCAAGATTCATTATTCGCGTCTGT
TCAGTACCGCGCCGCAGCAGACGTCGCCCCAGGGGCCGCGCGTCGTCGTG
TTGGGCTCCGGCTGGGCTGCGCATTCGTTTGTCAAAGTGGTTGATCACAC
GCAGTTTCAGAGCGTCACTGTCGTGTCCCCGAGGAACTTTTTCTTCTTCA
CGCCCTTGTTGAGCGCTACGGCAGTCGGAACTGTCGAGTTTCGCTCCATT
GTGGAGCCCATACGAAAAGCGAATCCGTTTGTTGATTACTATGAGGCGTA
TGCGGTCGATGTGGATGTGGAGCGCCGCGTCGTCAAATGCGAGAAGGGTC
AGAGAGAGGGCGTGCCTTCCGCGAATGCAGTATGTTTCCAGATTCCTTAC
GACGTTCTTGTGGTAGCCGTAGGAGAGACCACCACCACCTTTGGCGTGGA
AGGCGCCAATAAATATGGCTACTTTCTCAAGGAGATCTCAGATGCGAGGC
GTCTTCGAAACAGTATTTTGGATGCCTTGGAGAAGGCTGCTTTGCCTTTA
TGGACTGACCAGCAGCGGAAGGACATGTTGCACATTGTCGTCGTGGGTGG
TGGACCCACTGGATGCGAGTTTGCCGGAGAACTGTCTGACTTTGTCCAAA
ATGACCTCGCACCGCGATATGGCAAGGAGCTTGTGTCTTGCATTCGTGTG
TCGTTGCTGCAATCGGGAAAGTCTTTATTGACGCAGTTTGAAACATCCTT
GCAGCAGTTGGCGTTGCGCTCGTTTTCTGGACGAGTTGACGTGCAGTTTG
GTGCGAGGGTGACTGATGTGACCGGCGAAGAAGTGGTGTTACAGGATGGC
ACCAGAATTCGATATGGTTTATTGGTGTGGGCCGCTGGTAATGGTACCAG
ACCTATTGTGAACTCGCTCATGTCCAAGCTGGATAACGATGCCGATTTGG
ATGACGTGCCGCGGAGAAAGAAGTTACCGGTGGATGGATGGTTGCGAGTG
ATTGGATTGAGGAATGTGTTTGCGATGGGAGATTGCGCACAGATGGTTGA
CGGCGCGCTGCCTAGTACCGCACAAGTTGCTGGTCAACAAGGCGCTTTTC
TTGCAAGTAAGTGgttttgttttgttttgttttgttttgCTCGCAGCGGC
GATATGCGAATGAGGCTTGTACTGACAAGCTTTTGGTGATGCTTTTGGCA
GGATTGCTTTCGAAGGCTGAAGCGAACAGCTTTGAGAACGAGGAGGACCT
TCCGGTGCTGCGAGACTCGGGCGGCAGACAGATGAGGGCATTCAGTTTTT
TATCTTTGGGCATCATGGCATATCTTGGAAACGACCGTGCAGGTACGTGT
GTTTATACACTGCTTTGATTTGAGGGGGTGAGCGTAAATACTGACGTGGA
TGTTTTGTGAGCGACGTAGTTGTTCAGGTGGAGGCTACACCGACGAAGAA
CGTAGCAATTGGAGGTCGCATAGCTTATGCTCTGTGGCGAAGCGTGTACG
CTGTGAAGCAGGTGGACGTTCGAAATCGCATTCTTGTGCTGTTTGATTAC
TTCAAGAGTCGCGTATACGGACGTGACATTTCGCAGTTCTGA

Coding sequence (CDS) from alignment at NODE_345_length_29203_cov_4.997492:4709..6500+

>Gcaud8325.t1 ID=Gcaud8325.t1|Name=Gcaud8325.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1620bp|location=Sequence derived from alignment at NODE_345_length_29203_cov_4.997492:4709..6500+ (Gracilaria caudata M_176_S67 male)
ATGAGCTCCACCTGCTTTGCGTTCCTCCCGCCGCAGCCGCTGCCGCTCCG
TCGCGGCCGCTTCGCCCGCGCGCCTCGCTGCGTGCCGCGCGCCTCCGCCA
AGCCGCCGGTGCGCGACACGAAGCCCGCCACACCGCCCGCCACGAGCAGG
ACCAGAGCGCCGGTGCCGCCGCGCCCGCAGAACTTGCAGGTGGTGCTCGA
CCGTTTGGCCGACACTTTACTCGATGCCAAGATTCATTATTCGCGTCTGT
TCAGTACCGCGCCGCAGCAGACGTCGCCCCAGGGGCCGCGCGTCGTCGTG
TTGGGCTCCGGCTGGGCTGCGCATTCGTTTGTCAAAGTGGTTGATCACAC
GCAGTTTCAGAGCGTCACTGTCGTGTCCCCGAGGAACTTTTTCTTCTTCA
CGCCCTTGTTGAGCGCTACGGCAGTCGGAACTGTCGAGTTTCGCTCCATT
GTGGAGCCCATACGAAAAGCGAATCCGTTTGTTGATTACTATGAGGCGTA
TGCGGTCGATGTGGATGTGGAGCGCCGCGTCGTCAAATGCGAGAAGGGTC
AGAGAGAGGGCGTGCCTTCCGCGAATGCAGTATGTTTCCAGATTCCTTAC
GACGTTCTTGTGGTAGCCGTAGGAGAGACCACCACCACCTTTGGCGTGGA
AGGCGCCAATAAATATGGCTACTTTCTCAAGGAGATCTCAGATGCGAGGC
GTCTTCGAAACAGTATTTTGGATGCCTTGGAGAAGGCTGCTTTGCCTTTA
TGGACTGACCAGCAGCGGAAGGACATGTTGCACATTGTCGTCGTGGGTGG
TGGACCCACTGGATGCGAGTTTGCCGGAGAACTGTCTGACTTTGTCCAAA
ATGACCTCGCACCGCGATATGGCAAGGAGCTTGTGTCTTGCATTCGTGTG
TCGTTGCTGCAATCGGGAAAGTCTTTATTGACGCAGTTTGAAACATCCTT
GCAGCAGTTGGCGTTGCGCTCGTTTTCTGGACGAGTTGACGTGCAGTTTG
GTGCGAGGGTGACTGATGTGACCGGCGAAGAAGTGGTGTTACAGGATGGC
ACCAGAATTCGATATGGTTTATTGGTGTGGGCCGCTGGTAATGGTACCAG
ACCTATTGTGAACTCGCTCATGTCCAAGCTGGATAACGATGCCGATTTGG
ATGACGTGCCGCGGAGAAAGAAGTTACCGGTGGATGGATGGTTGCGAGTG
ATTGGATTGAGGAATGTGTTTGCGATGGGAGATTGCGCACAGATGGTTGA
CGGCGCGCTGCCTAGTACCGCACAAGTTGCTGGTCAACAAGGCGCTTTTC
TTGCAAGATTGCTTTCGAAGGCTGAAGCGAACAGCTTTGAGAACGAGGAG
GACCTTCCGGTGCTGCGAGACTCGGGCGGCAGACAGATGAGGGCATTCAG
TTTTTTATCTTTGGGCATCATGGCATATCTTGGAAACGACCGTGCAGTTG
TTCAGGTGGAGGCTACACCGACGAAGAACGTAGCAATTGGAGGTCGCATA
GCTTATGCTCTGTGGCGAAGCGTGTACGCTGTGAAGCAGGTGGACGTTCG
AAATCGCATTCTTGTGCTGTTTGATTACTTCAAGAGTCGCGTATACGGAC
GTGACATTTCGCAGTTCTGA