Gcaud8324.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8324.t1
Unique Name	Gcaud8324.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	300

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_345_length_29203_cov_4.997492	contig	NODE_345_length_29203_cov_4.997492:2783..3682 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMI080CT
Max annot lvl	2759\|Eukaryota
Evalue	1.88e-68
EggNOG OGs	2EQT4@1\|root,2STRA@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8324	Gcaud8324	Gracilaria caudata M_176_S67 male	gene	NODE_345_length_29203_cov_4.997492 2783..3682 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8324.t1.stop1	Gcaud8324.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_345_length_29203_cov_4.997492 2783..2785 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8324.t1.CDS1	Gcaud8324.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_345_length_29203_cov_4.997492 2783..3682 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8324.t1.exon1	Gcaud8324.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_345_length_29203_cov_4.997492 2783..3682 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8324.t1.start1	Gcaud8324.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_345_length_29203_cov_4.997492 3680..3682 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8324.t1	Gcaud8324.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_345_length_29203_cov_4.997492 2783..3682 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_345_length_29203_cov_4.997492:2783..3682-
coding sequence from alignment at NODE_345_length_29203_cov_4.997492:2783..3682-

mRNA sequence

>Gcaud8324.t1 ID=Gcaud8324.t1|Name=Gcaud8324.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=300bp
LILRILAHVANVRASIPLRTIKSDSNPSWLPFPLVSEWISPLPNGRYIVT
YDQPGRWMTDQQLEQLRESLRYVAKASVQCVPNHALFHSPKAFHNRVVSI
VFDNEQALGFCAVLYMPGHRVEDGTIIHLGLTMISRSARKQRLQSSLLSK
CLLLPSINLSTLEYYVTNIAASPAGIGSVSDYFSDTFPHYAGVVQRKDHH
LRIARHVLTNFRHEFGCSRFAKFDESTFVVYSSNDARGGGTHEFIRPDGT
AVSRYRDDICDKFVLKFLDLTRGDELFQVATMNVFSSLYNYFSRRLRRH*

spliced messenger RNA

>Gcaud8324.t1 ID=Gcaud8324.t1|Name=Gcaud8324.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=900bp|location=Sequence derived from alignment at NODE_345_length_29203_cov_4.997492:2783..3682- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGATCCTGCGCATTCTGGCGCACGTGGCGAACGTTCGTGCCTCTATTCC
CTTGAGAACTATCAAGTCCGATAGTAACCCTTCTTGGCTCCCATTTCCGT
TGGTGTCCGAATGGATCTCACCCCTTCCGAATGGTCGCTACATTGTAACC
TATGATCAGCCTGGTCGCTGGATGACCGATCAACAGCTCGAGCAGCTCCG
TGAATCTCTCCGATACGTTGCAAAGGCCTCCGTGCAGTGCGTTCCCAACC
ACGCCCTCTTCCATTCGCCCAAAGCCTTTCACAATCGCGTTGTGTCTATT
GTCTTTGACAACGAACAAGCGCTTGGATTTTGTGCCGTTCTGTACATGCC
AGGTCACCGCGTCGAGGACGGCACCATAATTCATCTCGGACTTACCATGA
TCAGTCGCAGTGCTCGTAAACAGCGTCTGCAGAGCTCGTTGTTGAGCAAG
TGTCTACTCCTACCTTCTATTAACTTAAGTACTTTGGAGTACTATGTCAC
AAACATCGCCGCCTCTCCTGCCGGTATTGGAAGCGTAAGTGACTATTTCA
GCGATACATTCCCACATTATGCCGGCGTGGTGCAAAGAAAGGATCACCAT
TTGCGAATTGCCCGTCATGTGCTCACCAATTTCCGACACGAGTTTGGTTG
CAGTCGTTTCGCAAAGTTCGATGAATCTACCTTCGTCGTATATTCTTCCA
ATGACGCTCGTGGCGGCGGCACCCACGAGTTCATCAGACCTGACGGTACT
GCCGTTTCTAGATATCGTGACGATATTTGTGATAAGTTTGTGCTGAAATT
TTTGGACTTGACGCGTGGGGACGAATTGTTTCAAGTGGCTACCATGAATG
TGTTCAGCTCATTGTACAACTACTTCAGCCGTCGACTACGACGACATTGA

protein sequence of Gcaud8324.t1

>Gcaud8324.t1 ID=Gcaud8324.t1|Name=Gcaud8324.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=300bp
LILRILAHVANVRASIPLRTIKSDSNPSWLPFPLVSEWISPLPNGRYIVT
YDQPGRWMTDQQLEQLRESLRYVAKASVQCVPNHALFHSPKAFHNRVVSI
VFDNEQALGFCAVLYMPGHRVEDGTIIHLGLTMISRSARKQRLQSSLLSK
CLLLPSINLSTLEYYVTNIAASPAGIGSVSDYFSDTFPHYAGVVQRKDHH
LRIARHVLTNFRHEFGCSRFAKFDESTFVVYSSNDARGGGTHEFIRPDGT
AVSRYRDDICDKFVLKFLDLTRGDELFQVATMNVFSSLYNYFSRRLRRH*

mRNA from alignment at NODE_345_length_29203_cov_4.997492:2783..3682-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8324.t1 ID=Gcaud8324.t1|Name=Gcaud8324.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=900bp|location=Sequence derived from alignment at NODE_345_length_29203_cov_4.997492:2783..3682- (Gracilaria caudata M_176_S67 male)
CTGATCCTGCGCATTCTGGCGCACGTGGCGAACGTTCGTGCCTCTATTCC
CTTGAGAACTATCAAGTCCGATAGTAACCCTTCTTGGCTCCCATTTCCGT
TGGTGTCCGAATGGATCTCACCCCTTCCGAATGGTCGCTACATTGTAACC
TATGATCAGCCTGGTCGCTGGATGACCGATCAACAGCTCGAGCAGCTCCG
TGAATCTCTCCGATACGTTGCAAAGGCCTCCGTGCAGTGCGTTCCCAACC
ACGCCCTCTTCCATTCGCCCAAAGCCTTTCACAATCGCGTTGTGTCTATT
GTCTTTGACAACGAACAAGCGCTTGGATTTTGTGCCGTTCTGTACATGCC
AGGTCACCGCGTCGAGGACGGCACCATAATTCATCTCGGACTTACCATGA
TCAGTCGCAGTGCTCGTAAACAGCGTCTGCAGAGCTCGTTGTTGAGCAAG
TGTCTACTCCTACCTTCTATTAACTTAAGTACTTTGGAGTACTATGTCAC
AAACATCGCCGCCTCTCCTGCCGGTATTGGAAGCGTAAGTGACTATTTCA
GCGATACATTCCCACATTATGCCGGCGTGGTGCAAAGAAAGGATCACCAT
TTGCGAATTGCCCGTCATGTGCTCACCAATTTCCGACACGAGTTTGGTTG
CAGTCGTTTCGCAAAGTTCGATGAATCTACCTTCGTCGTATATTCTTCCA
ATGACGCTCGTGGCGGCGGCACCCACGAGTTCATCAGACCTGACGGTACT
GCCGTTTCTAGATATCGTGACGATATTTGTGATAAGTTTGTGCTGAAATT
TTTGGACTTGACGCGTGGGGACGAATTGTTTCAAGTGGCTACCATGAATG
TGTTCAGCTCATTGTACAACTACTTCAGCCGTCGACTACGACGACATTGA

Coding sequence (CDS) from alignment at NODE_345_length_29203_cov_4.997492:2783..3682-

>Gcaud8324.t1 ID=Gcaud8324.t1|Name=Gcaud8324.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=900bp|location=Sequence derived from alignment at NODE_345_length_29203_cov_4.997492:2783..3682- (Gracilaria caudata M_176_S67 male)
CTGATCCTGCGCATTCTGGCGCACGTGGCGAACGTTCGTGCCTCTATTCC
CTTGAGAACTATCAAGTCCGATAGTAACCCTTCTTGGCTCCCATTTCCGT
TGGTGTCCGAATGGATCTCACCCCTTCCGAATGGTCGCTACATTGTAACC
TATGATCAGCCTGGTCGCTGGATGACCGATCAACAGCTCGAGCAGCTCCG
TGAATCTCTCCGATACGTTGCAAAGGCCTCCGTGCAGTGCGTTCCCAACC
ACGCCCTCTTCCATTCGCCCAAAGCCTTTCACAATCGCGTTGTGTCTATT
GTCTTTGACAACGAACAAGCGCTTGGATTTTGTGCCGTTCTGTACATGCC
AGGTCACCGCGTCGAGGACGGCACCATAATTCATCTCGGACTTACCATGA
TCAGTCGCAGTGCTCGTAAACAGCGTCTGCAGAGCTCGTTGTTGAGCAAG
TGTCTACTCCTACCTTCTATTAACTTAAGTACTTTGGAGTACTATGTCAC
AAACATCGCCGCCTCTCCTGCCGGTATTGGAAGCGTAAGTGACTATTTCA
GCGATACATTCCCACATTATGCCGGCGTGGTGCAAAGAAAGGATCACCAT
TTGCGAATTGCCCGTCATGTGCTCACCAATTTCCGACACGAGTTTGGTTG
CAGTCGTTTCGCAAAGTTCGATGAATCTACCTTCGTCGTATATTCTTCCA
ATGACGCTCGTGGCGGCGGCACCCACGAGTTCATCAGACCTGACGGTACT
GCCGTTTCTAGATATCGTGACGATATTTGTGATAAGTTTGTGCTGAAATT
TTTGGACTTGACGCGTGGGGACGAATTGTTTCAAGTGGCTACCATGAATG
TGTTCAGCTCATTGTACAACTACTTCAGCCGTCGACTACGACGACATTGA