Gcaud831.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud831.t1
Unique NameGcaud831.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length129
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_490_length_23884_cov_4.522254contigNODE_490_length_23884_cov_4.522254:1756..2379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud831Gcaud831Gracilaria caudata M_176_S67 malegeneNODE_490_length_23884_cov_4.522254 1756..2379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud831.t1Gcaud831.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_490_length_23884_cov_4.522254 1756..2379 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud831.t1.start1Gcaud831.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_490_length_23884_cov_4.522254 1756..1758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud831.t1.CDS1Gcaud831.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_490_length_23884_cov_4.522254 1756..1948 +
Gcaud831.t1.CDS2Gcaud831.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_490_length_23884_cov_4.522254 2186..2379 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud831.t1.exon1Gcaud831.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_490_length_23884_cov_4.522254 1756..1948 +
Gcaud831.t1.exon2Gcaud831.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_490_length_23884_cov_4.522254 2186..2379 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud831.t1.intron1Gcaud831.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_490_length_23884_cov_4.522254 1949..2185 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud831.t1.stop1Gcaud831.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_490_length_23884_cov_4.522254 2377..2379 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud831.t1 ID=Gcaud831.t1|Name=Gcaud831.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=129bp
MLALRSSLIRAAALVAPRRSLAISATVKVAPDTSAENFPAPSHVSLSSEA
ADLAQQLNAFYSDPESVVSLSDETRDALQAEVMKRVLSVPEAEVSTAWAE
QNLQIPSEIRLGDNPLFESAQKMRIGSK*
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spliced messenger RNA

>Gcaud831.t1 ID=Gcaud831.t1|Name=Gcaud831.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=387bp|location=Sequence derived from alignment at NODE_490_length_23884_cov_4.522254:1756..2379+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGCTCTCCGCTCCTCCCTTATCCGTGCCGCGGCTTTAGTCGCTCC
AAGACGCAGTCTTGCTATCTCGGCCACCGTGAAAGTGGCCCCGGACACGT
CCGCAGAGAACTTTCCCGCCCCGTCTCATGTCAGTCTATCTTCCGAAGCA
GCCGATCTCGCGCAGCAGCTTAATGCGTTCTATTCTGATCCAGAGAGTGT
TGTGTCTCTCTCAGACGAAACTAGAGACGCTCTACAGGCCGAAGTCATGA
AAAGAGTTTTGTCCGTCCCAGAAGCGGAAGTATCTACCGCTTGGGCAGAG
CAAAACCTTCAGATTCCTTCAGAGATTCGTCTGGGCGACAATCCGCTGTT
CGAAAGCGCCCAGAAGATGCGAATTGGCTCCAAGTAA
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protein sequence of Gcaud831.t1

>Gcaud831.t1 ID=Gcaud831.t1|Name=Gcaud831.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=129bp
MLALRSSLIRAAALVAPRRSLAISATVKVAPDTSAENFPAPSHVSLSSEA
ADLAQQLNAFYSDPESVVSLSDETRDALQAEVMKRVLSVPEAEVSTAWAE
QNLQIPSEIRLGDNPLFESAQKMRIGSK*
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mRNA from alignment at NODE_490_length_23884_cov_4.522254:1756..2379+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud831.t1 ID=Gcaud831.t1|Name=Gcaud831.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=624bp|location=Sequence derived from alignment at NODE_490_length_23884_cov_4.522254:1756..2379+ (Gracilaria caudata M_176_S67 male)
ATGTTGGCTCTCCGCTCCTCCCTTATCCGTGCCGCGGCTTTAGTCGCTCC
AAGACGCAGTCTTGCTATCTCGGCCACCGTGAAAGTGGCCCCGGACACGT
CCGCAGAGAACTTTCCCGCCCCGTCTCATGTCAGTCTATCTTCCGAAGCA
GCCGATCTCGCGCAGCAGCTTAATGCGTTCTATTCTGATCCAGGTAAGCA
ACCATCACTTGTGCGTGCCCTTTGACGAAATTGATGATTATACTCTGGTG
AAGTGTACACCAAATGCTTTCCTTCGTTCCAACCAGTTCATGGGGCGGAC
GCCGAGCACTTGTCGCGTGAAGATGCCACAGGAGGGCAAGCGAAGATTCC
AATGTTTTCGTTGCGATTTGCCATCAGGTCATCTTCCGCTAGGATCTAAC
CGAGCAAGTATGTTCATGTGTAACGAACAGAGAGTGTTGTGTCTCTCTCA
GACGAAACTAGAGACGCTCTACAGGCCGAAGTCATGAAAAGAGTTTTGTC
CGTCCCAGAAGCGGAAGTATCTACCGCTTGGGCAGAGCAAAACCTTCAGA
TTCCTTCAGAGATTCGTCTGGGCGACAATCCGCTGTTCGAAAGCGCCCAG
AAGATGCGAATTGGCTCCAAGTAA
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Coding sequence (CDS) from alignment at NODE_490_length_23884_cov_4.522254:1756..2379+

>Gcaud831.t1 ID=Gcaud831.t1|Name=Gcaud831.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=387bp|location=Sequence derived from alignment at NODE_490_length_23884_cov_4.522254:1756..2379+ (Gracilaria caudata M_176_S67 male)
ATGTTGGCTCTCCGCTCCTCCCTTATCCGTGCCGCGGCTTTAGTCGCTCC
AAGACGCAGTCTTGCTATCTCGGCCACCGTGAAAGTGGCCCCGGACACGT
CCGCAGAGAACTTTCCCGCCCCGTCTCATGTCAGTCTATCTTCCGAAGCA
GCCGATCTCGCGCAGCAGCTTAATGCGTTCTATTCTGATCCAGAGAGTGT
TGTGTCTCTCTCAGACGAAACTAGAGACGCTCTACAGGCCGAAGTCATGA
AAAGAGTTTTGTCCGTCCCAGAAGCGGAAGTATCTACCGCTTGGGCAGAG
CAAAACCTTCAGATTCCTTCAGAGATTCGTCTGGGCGACAATCCGCTGTT
CGAAAGCGCCCAGAAGATGCGAATTGGCTCCAAGTAA
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