Gcaud8308.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8308.t1
Unique Name	Gcaud8308.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	520

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_790_length_17954_cov_4.439568	contig	NODE_790_length_17954_cov_4.439568:8988..10693 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1254432.SCE1572_29245
Max annot lvl	2\|Bacteria
Evalue	5.04e-35
EggNOG OGs	2F7CA@1\|root,33ZTC@2\|Bacteria

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8308	Gcaud8308	Gracilaria caudata M_176_S67 male	gene	NODE_790_length_17954_cov_4.439568 8988..10693 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8308.t1	Gcaud8308.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_790_length_17954_cov_4.439568 8988..10693 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8308.t1.stop1	Gcaud8308.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_790_length_17954_cov_4.439568 8988..8990 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8308.t1.CDS1	Gcaud8308.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_790_length_17954_cov_4.439568 8988..10167 -
Gcaud8308.t1.CDS2	Gcaud8308.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_790_length_17954_cov_4.439568 10314..10693 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8308.t1.exon1	Gcaud8308.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_790_length_17954_cov_4.439568 8988..10167 -
Gcaud8308.t1.exon2	Gcaud8308.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_790_length_17954_cov_4.439568 10314..10693 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8308.t1.intron1	Gcaud8308.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_790_length_17954_cov_4.439568 10168..10313 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8308.t1.start1	Gcaud8308.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_790_length_17954_cov_4.439568 10691..10693 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_790_length_17954_cov_4.439568:8988..10693-
coding sequence from alignment at NODE_790_length_17954_cov_4.439568:8988..10693-

mRNA sequence

>Gcaud8308.t1 ID=Gcaud8308.t1|Name=Gcaud8308.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=520bp
MESITLRILCPQYSRQQLNNRMRLKKRASSDRSGDNVIFTWTAKQALFVY
TTFVIWNSLPKNAIGLVPTGMRGALWEVPTGNRPPDTLHAISCKPSPFLR
QEQLLSLLALHVILNELGSGVNYFNSNAQRDAFVQYFGIKQMVFLVCHIF
EGILSAEEWMSALPNATRLLAFLGFESYSDDLSNGLARCGINDSSMQIRR
KVVHAFNAAAVNRLQQSHSAHEYVSLKENLIRQMPMLGIGIYPEKLLRLG
KRFVEETRWQSLDELNTGLKGMLVANIESCNTVFNMMEDLPCAQLVRKGL
INRYKAADALIFEKGLSLQARIDLSVESILVTPVIAVLMSAIGRNCLTAD
GLNELEEDGTIEKALVDASAIVRLLNDLGDLLSKLESIDVQKLRARMEEF
WKQDKNIDFGFEETLLKFSQDRVEMTRIRKDLVCGEHNLALETLPKNAGI
DETLNAFFDNLAYMRSLYKWHDERLNEMTKRMNERLGDNRFSAVILRFVE
FHKVIYGNEFESKDGEYGI*

spliced messenger RNA

>Gcaud8308.t1 ID=Gcaud8308.t1|Name=Gcaud8308.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1560bp|location=Sequence derived from alignment at NODE_790_length_17954_cov_4.439568:8988..10693- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCAATAACGCTACGAATTCTTTGCCCGCAGTACTCGAGACAACA
GCTCAACAACAGAATGAGACTCAAAAAGAGGGCTAGTTCTGATCGCTCAG
GAGACAACGTAATATTCACCTGGACTGCAAAACAAGCGCTCTTTGTGTAC
ACTACCTTCGTAATATGGAACTCCCTTCCAAAGAACGCAATTGGCCTTGT
TCCGACAGGCATGCGTGGTGCTTTGTGGGAAGTTCCCACTGGAAACCGTC
CGCCGGACACTTTGCACGCCATTTCTTGCAAACCGTCACCGTTTCTCCGT
CAAGAACAGCTCTTGAGTTTGCTCGCACTGCATGTAATTCTCAACGAGCT
CGGTTCCGGCGTCAATTACTTCAACAGCAACGCCCAAAGGGATGCGTTCG
TGCAATATTTCGGCATCAAGCAGATGGTCTTTCTTGTGTGCCACATATTT
GAAGGAATACTTTCCGCAGAAGAGTGGATGTCAGCACTACCTAACGCTAC
GAGATTGCTGGCGTTCTTGGGATTCGAATCGTACTCGGATGACTTGTCAA
ATGGTCTTGCGCGGTGTGGCATAAACGATAGCAGCATGCAGATTCGTCGA
AAGGTTGTTCACGCCTTCAATGCAGCGGCAGTCAATCGACTACAACAGAG
TCATTCGGCGCACGAGTATGTGTCACTCAAAGAGAATCTCATTCGCCAAA
TGCCGATGTTGGGAATTGGGATCTATCCCGAAAAGCTGCTCCGCTTGGGT
AAAAGATTTGTGGAAGAGACCAGATGGCAGTCGTTGGATGAGCTGAACAC
TGGCCTAAAGGGTATGCTAGTGGCAAATATTGAAAGCTGCAACACAGTGT
TCAATATGATGGAAGATTTACCTTGCGCACAGCTGGTTCGTAAAGGTCTC
ATCAATCGGTATAAAGCGGCAGATGCGTTAATCTTTGAAAAGGGACTGAG
CTTACAAGCCAGAATTGACTTGAGCGTAGAATCCATTCTAGTTACACCCG
TGATCGCCGTTCTAATGAGCGCGATTGGTCGTAACTGCTTGACGGCAGAT
GGACTCAATGAATTAGAGGAGGATGGGACGATAGAGAAGGCGCTGGTCGA
TGCCTCTGCGATTGTTCGTCTATTGAATGACCTTGGGGACCTTCTTTCAA
AGCTGGAAAGCATAGATGTTCAAAAGCTCCGAGCCAGAATGGAAGAGTTT
TGGAAACAGGATAAGAACATTGATTTTGGGTTCGAGGAGACGCTCCTGAA
ATTTAGTCAAGACCGAGTTGAAATGACTCGTATTCGGAAAGATCTTGTGT
GTGGCGAACACAACCTGGCGCTGGAAACGTTGCCTAAGAATGCTGGCATC
GATGAGACGCTCAACGCATTTTTTGACAACTTGGCATATATGCGAAGCTT
GTATAAGTGGCACGATGAGCGACTGAATGAAATGACGAAACGAATGAACG
AGCGGCTCGGAGATAATCGCTTCAGTGCTGTGATTCTAAGGTTTGTTGAG
TTTCACAAAGTGATTTACGGCAACGAGTTCGAAAGCAAAGACGGTGAGTA
CGGAATCTAG

protein sequence of Gcaud8308.t1

>Gcaud8308.t1 ID=Gcaud8308.t1|Name=Gcaud8308.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=520bp
MESITLRILCPQYSRQQLNNRMRLKKRASSDRSGDNVIFTWTAKQALFVY
TTFVIWNSLPKNAIGLVPTGMRGALWEVPTGNRPPDTLHAISCKPSPFLR
QEQLLSLLALHVILNELGSGVNYFNSNAQRDAFVQYFGIKQMVFLVCHIF
EGILSAEEWMSALPNATRLLAFLGFESYSDDLSNGLARCGINDSSMQIRR
KVVHAFNAAAVNRLQQSHSAHEYVSLKENLIRQMPMLGIGIYPEKLLRLG
KRFVEETRWQSLDELNTGLKGMLVANIESCNTVFNMMEDLPCAQLVRKGL
INRYKAADALIFEKGLSLQARIDLSVESILVTPVIAVLMSAIGRNCLTAD
GLNELEEDGTIEKALVDASAIVRLLNDLGDLLSKLESIDVQKLRARMEEF
WKQDKNIDFGFEETLLKFSQDRVEMTRIRKDLVCGEHNLALETLPKNAGI
DETLNAFFDNLAYMRSLYKWHDERLNEMTKRMNERLGDNRFSAVILRFVE
FHKVIYGNEFESKDGEYGI*

mRNA from alignment at NODE_790_length_17954_cov_4.439568:8988..10693-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8308.t1 ID=Gcaud8308.t1|Name=Gcaud8308.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1706bp|location=Sequence derived from alignment at NODE_790_length_17954_cov_4.439568:8988..10693- (Gracilaria caudata M_176_S67 male)
ATGGAGTCAATAACGCTACGAATTCTTTGCCCGCAGTACTCGAGACAACA
GCTCAACAACAGAATGAGACTCAAAAAGAGGGCTAGTTCTGATCGCTCAG
GAGACAACGTAATATTCACCTGGACTGCAAAACAAGCGCTCTTTGTGTAC
ACTACCTTCGTAATATGGAACTCCCTTCCAAAGAACGCAATTGGCCTTGT
TCCGACAGGCATGCGTGGTGCTTTGTGGGAAGTTCCCACTGGAAACCGTC
CGCCGGACACTTTGCACGCCATTTCTTGCAAACCGTCACCGTTTCTCCGT
CAAGAACAGCTCTTGAGTTTGCTCGCACTGCATGTAATTCTCAACGAGCT
CGGTTCCGGCGTCAATTACTTCAACAGCAAGTACGTTCATCTGGTGCAGA
TCATCATGATGCAGGCATGCATCAAAAGTTGTTGTCATCCGTCACACATG
CAATGGTTCAAACCATGAATTACCAATGTCGTGGTACTGCCGCGTGCTTC
ATTACCTGGTGCGCTACGGATAACAGCGCCCAAAGGGATGCGTTCGTGCA
ATATTTCGGCATCAAGCAGATGGTCTTTCTTGTGTGCCACATATTTGAAG
GAATACTTTCCGCAGAAGAGTGGATGTCAGCACTACCTAACGCTACGAGA
TTGCTGGCGTTCTTGGGATTCGAATCGTACTCGGATGACTTGTCAAATGG
TCTTGCGCGGTGTGGCATAAACGATAGCAGCATGCAGATTCGTCGAAAGG
TTGTTCACGCCTTCAATGCAGCGGCAGTCAATCGACTACAACAGAGTCAT
TCGGCGCACGAGTATGTGTCACTCAAAGAGAATCTCATTCGCCAAATGCC
GATGTTGGGAATTGGGATCTATCCCGAAAAGCTGCTCCGCTTGGGTAAAA
GATTTGTGGAAGAGACCAGATGGCAGTCGTTGGATGAGCTGAACACTGGC
CTAAAGGGTATGCTAGTGGCAAATATTGAAAGCTGCAACACAGTGTTCAA
TATGATGGAAGATTTACCTTGCGCACAGCTGGTTCGTAAAGGTCTCATCA
ATCGGTATAAAGCGGCAGATGCGTTAATCTTTGAAAAGGGACTGAGCTTA
CAAGCCAGAATTGACTTGAGCGTAGAATCCATTCTAGTTACACCCGTGAT
CGCCGTTCTAATGAGCGCGATTGGTCGTAACTGCTTGACGGCAGATGGAC
TCAATGAATTAGAGGAGGATGGGACGATAGAGAAGGCGCTGGTCGATGCC
TCTGCGATTGTTCGTCTATTGAATGACCTTGGGGACCTTCTTTCAAAGCT
GGAAAGCATAGATGTTCAAAAGCTCCGAGCCAGAATGGAAGAGTTTTGGA
AACAGGATAAGAACATTGATTTTGGGTTCGAGGAGACGCTCCTGAAATTT
AGTCAAGACCGAGTTGAAATGACTCGTATTCGGAAAGATCTTGTGTGTGG
CGAACACAACCTGGCGCTGGAAACGTTGCCTAAGAATGCTGGCATCGATG
AGACGCTCAACGCATTTTTTGACAACTTGGCATATATGCGAAGCTTGTAT
AAGTGGCACGATGAGCGACTGAATGAAATGACGAAACGAATGAACGAGCG
GCTCGGAGATAATCGCTTCAGTGCTGTGATTCTAAGGTTTGTTGAGTTTC
ACAAAGTGATTTACGGCAACGAGTTCGAAAGCAAAGACGGTGAGTACGGA
ATCTAG

Coding sequence (CDS) from alignment at NODE_790_length_17954_cov_4.439568:8988..10693-

>Gcaud8308.t1 ID=Gcaud8308.t1|Name=Gcaud8308.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1560bp|location=Sequence derived from alignment at NODE_790_length_17954_cov_4.439568:8988..10693- (Gracilaria caudata M_176_S67 male)
ATGGAGTCAATAACGCTACGAATTCTTTGCCCGCAGTACTCGAGACAACA
GCTCAACAACAGAATGAGACTCAAAAAGAGGGCTAGTTCTGATCGCTCAG
GAGACAACGTAATATTCACCTGGACTGCAAAACAAGCGCTCTTTGTGTAC
ACTACCTTCGTAATATGGAACTCCCTTCCAAAGAACGCAATTGGCCTTGT
TCCGACAGGCATGCGTGGTGCTTTGTGGGAAGTTCCCACTGGAAACCGTC
CGCCGGACACTTTGCACGCCATTTCTTGCAAACCGTCACCGTTTCTCCGT
CAAGAACAGCTCTTGAGTTTGCTCGCACTGCATGTAATTCTCAACGAGCT
CGGTTCCGGCGTCAATTACTTCAACAGCAACGCCCAAAGGGATGCGTTCG
TGCAATATTTCGGCATCAAGCAGATGGTCTTTCTTGTGTGCCACATATTT
GAAGGAATACTTTCCGCAGAAGAGTGGATGTCAGCACTACCTAACGCTAC
GAGATTGCTGGCGTTCTTGGGATTCGAATCGTACTCGGATGACTTGTCAA
ATGGTCTTGCGCGGTGTGGCATAAACGATAGCAGCATGCAGATTCGTCGA
AAGGTTGTTCACGCCTTCAATGCAGCGGCAGTCAATCGACTACAACAGAG
TCATTCGGCGCACGAGTATGTGTCACTCAAAGAGAATCTCATTCGCCAAA
TGCCGATGTTGGGAATTGGGATCTATCCCGAAAAGCTGCTCCGCTTGGGT
AAAAGATTTGTGGAAGAGACCAGATGGCAGTCGTTGGATGAGCTGAACAC
TGGCCTAAAGGGTATGCTAGTGGCAAATATTGAAAGCTGCAACACAGTGT
TCAATATGATGGAAGATTTACCTTGCGCACAGCTGGTTCGTAAAGGTCTC
ATCAATCGGTATAAAGCGGCAGATGCGTTAATCTTTGAAAAGGGACTGAG
CTTACAAGCCAGAATTGACTTGAGCGTAGAATCCATTCTAGTTACACCCG
TGATCGCCGTTCTAATGAGCGCGATTGGTCGTAACTGCTTGACGGCAGAT
GGACTCAATGAATTAGAGGAGGATGGGACGATAGAGAAGGCGCTGGTCGA
TGCCTCTGCGATTGTTCGTCTATTGAATGACCTTGGGGACCTTCTTTCAA
AGCTGGAAAGCATAGATGTTCAAAAGCTCCGAGCCAGAATGGAAGAGTTT
TGGAAACAGGATAAGAACATTGATTTTGGGTTCGAGGAGACGCTCCTGAA
ATTTAGTCAAGACCGAGTTGAAATGACTCGTATTCGGAAAGATCTTGTGT
GTGGCGAACACAACCTGGCGCTGGAAACGTTGCCTAAGAATGCTGGCATC
GATGAGACGCTCAACGCATTTTTTGACAACTTGGCATATATGCGAAGCTT
GTATAAGTGGCACGATGAGCGACTGAATGAAATGACGAAACGAATGAACG
AGCGGCTCGGAGATAATCGCTTCAGTGCTGTGATTCTAAGGTTTGTTGAG
TTTCACAAAGTGATTTACGGCAACGAGTTCGAAAGCAAAGACGGTGAGTA
CGGAATCTAG