Gcaud8307.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8307.t1
Unique NameGcaud8307.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length259
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_790_length_17954_cov_4.439568contigNODE_790_length_17954_cov_4.439568:6869..7645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog272952.HpaP801156
PFAMsRhomboid
Max annot lvl4776|Peronosporales
KEGG koko:K09651
Evalue2.96e-31
EggNOG OGsKOG2632@1|root,KOG2632@2759|Eukaryota,3Q9VY@4776|Peronosporales
DescriptionRhomboid family
COG categoryS
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8307Gcaud8307Gracilaria caudata M_176_S67 malegeneNODE_790_length_17954_cov_4.439568 6869..7645 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8307.t1.stop1Gcaud8307.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_790_length_17954_cov_4.439568 6869..6871 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8307.t1.CDS1Gcaud8307.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_790_length_17954_cov_4.439568 6869..7645 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8307.t1.exon1Gcaud8307.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_790_length_17954_cov_4.439568 6869..7645 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8307.t1.start1Gcaud8307.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_790_length_17954_cov_4.439568 7643..7645 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8307.t1Gcaud8307.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_790_length_17954_cov_4.439568 6869..7645 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8307.t1 ID=Gcaud8307.t1|Name=Gcaud8307.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=259bp
MNRRRTHRPTFEDTYAMGIAYNLIAQIMALERKPPTTLFFLVLNAAIFLL
PYLPIFVQIPREFRGLYDDALHWTAIRTACLIPGRIVSYSGELYRIVLST
LVHADSLHLVFNLTSFLYKGAVLEAVLGSVQLFVVIVYLMLSSSAMYVLI
AVIASESRIDQSLMYNCCVGFSGVIFGLKVLVNSDEVYADHTEDMFNFSL
PKQAVWAELILASLSAPQVSFLGHLCGILAGYTYLKFARTMGLMRQRRAS
RRPVWRYD*
back to top

spliced messenger RNA

>Gcaud8307.t1 ID=Gcaud8307.t1|Name=Gcaud8307.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=777bp|location=Sequence derived from alignment at NODE_790_length_17954_cov_4.439568:6869..7645- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCGTCGTCGCACTCACCGTCCAACCTTCGAGGACACTTACGCGAT
GGGAATCGCGTACAACCTAATAGCTCAGATCATGGCTCTAGAACGCAAGC
CTCCAACTACTCTGTTTTTCTTGGTTTTAAATGCTGCAATTTTCCTCCTC
CCATACCTTCCCATCTTCGTTCAGATTCCGAGAGAGTTTCGAGGTTTATA
CGACGACGCTCTTCACTGGACTGCGATTCGTACAGCATGCTTGATTCCAG
GGAGAATAGTCTCTTATAGTGGCGAATTATACCGCATTGTCCTTTCCACT
CTAGTGCATGCGGACAGTTTGCATTTGGTATTCAATCTGACAAGTTTTCT
GTACAAGGGAGCCGTTTTGGAAGCCGTACTTGGTTCTGTACAACTTTTTG
TTGTTATCGTGTATCTCATGCTGTCATCGTCCGCGATGTACGTTCTTATC
GCCGTCATTGCATCCGAAAGTAGAATAGATCAATCGTTAATGTACAACTG
TTGCGTAGGATTTTCTGGGGTCATCTTTGGATTGAAGGTGCTGGTGAACT
CAGACGAAGTGTATGCAGATCATACCGAAGACATGTTCAATTTTAGCCTT
CCGAAGCAGGCCGTATGGGCCGAGCTAATCTTAGCCTCACTCTCTGCTCC
CCAGGTCAGTTTTCTTGGACACTTGTGTGGAATACTAGCTGGTTATACTT
ATCTCAAGTTTGCAAGGACAATGGGTTTAATGAGACAGAGACGAGCCTCC
AGAAGACCAGTCTGGCGTTATGATTGA
back to top

protein sequence of Gcaud8307.t1

>Gcaud8307.t1 ID=Gcaud8307.t1|Name=Gcaud8307.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=259bp
MNRRRTHRPTFEDTYAMGIAYNLIAQIMALERKPPTTLFFLVLNAAIFLL
PYLPIFVQIPREFRGLYDDALHWTAIRTACLIPGRIVSYSGELYRIVLST
LVHADSLHLVFNLTSFLYKGAVLEAVLGSVQLFVVIVYLMLSSSAMYVLI
AVIASESRIDQSLMYNCCVGFSGVIFGLKVLVNSDEVYADHTEDMFNFSL
PKQAVWAELILASLSAPQVSFLGHLCGILAGYTYLKFARTMGLMRQRRAS
RRPVWRYD*
back to top

mRNA from alignment at NODE_790_length_17954_cov_4.439568:6869..7645-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8307.t1 ID=Gcaud8307.t1|Name=Gcaud8307.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=777bp|location=Sequence derived from alignment at NODE_790_length_17954_cov_4.439568:6869..7645- (Gracilaria caudata M_176_S67 male)
ATGAATCGTCGTCGCACTCACCGTCCAACCTTCGAGGACACTTACGCGAT
GGGAATCGCGTACAACCTAATAGCTCAGATCATGGCTCTAGAACGCAAGC
CTCCAACTACTCTGTTTTTCTTGGTTTTAAATGCTGCAATTTTCCTCCTC
CCATACCTTCCCATCTTCGTTCAGATTCCGAGAGAGTTTCGAGGTTTATA
CGACGACGCTCTTCACTGGACTGCGATTCGTACAGCATGCTTGATTCCAG
GGAGAATAGTCTCTTATAGTGGCGAATTATACCGCATTGTCCTTTCCACT
CTAGTGCATGCGGACAGTTTGCATTTGGTATTCAATCTGACAAGTTTTCT
GTACAAGGGAGCCGTTTTGGAAGCCGTACTTGGTTCTGTACAACTTTTTG
TTGTTATCGTGTATCTCATGCTGTCATCGTCCGCGATGTACGTTCTTATC
GCCGTCATTGCATCCGAAAGTAGAATAGATCAATCGTTAATGTACAACTG
TTGCGTAGGATTTTCTGGGGTCATCTTTGGATTGAAGGTGCTGGTGAACT
CAGACGAAGTGTATGCAGATCATACCGAAGACATGTTCAATTTTAGCCTT
CCGAAGCAGGCCGTATGGGCCGAGCTAATCTTAGCCTCACTCTCTGCTCC
CCAGGTCAGTTTTCTTGGACACTTGTGTGGAATACTAGCTGGTTATACTT
ATCTCAAGTTTGCAAGGACAATGGGTTTAATGAGACAGAGACGAGCCTCC
AGAAGACCAGTCTGGCGTTATGATTGA
back to top

Coding sequence (CDS) from alignment at NODE_790_length_17954_cov_4.439568:6869..7645-

>Gcaud8307.t1 ID=Gcaud8307.t1|Name=Gcaud8307.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=777bp|location=Sequence derived from alignment at NODE_790_length_17954_cov_4.439568:6869..7645- (Gracilaria caudata M_176_S67 male)
ATGAATCGTCGTCGCACTCACCGTCCAACCTTCGAGGACACTTACGCGAT
GGGAATCGCGTACAACCTAATAGCTCAGATCATGGCTCTAGAACGCAAGC
CTCCAACTACTCTGTTTTTCTTGGTTTTAAATGCTGCAATTTTCCTCCTC
CCATACCTTCCCATCTTCGTTCAGATTCCGAGAGAGTTTCGAGGTTTATA
CGACGACGCTCTTCACTGGACTGCGATTCGTACAGCATGCTTGATTCCAG
GGAGAATAGTCTCTTATAGTGGCGAATTATACCGCATTGTCCTTTCCACT
CTAGTGCATGCGGACAGTTTGCATTTGGTATTCAATCTGACAAGTTTTCT
GTACAAGGGAGCCGTTTTGGAAGCCGTACTTGGTTCTGTACAACTTTTTG
TTGTTATCGTGTATCTCATGCTGTCATCGTCCGCGATGTACGTTCTTATC
GCCGTCATTGCATCCGAAAGTAGAATAGATCAATCGTTAATGTACAACTG
TTGCGTAGGATTTTCTGGGGTCATCTTTGGATTGAAGGTGCTGGTGAACT
CAGACGAAGTGTATGCAGATCATACCGAAGACATGTTCAATTTTAGCCTT
CCGAAGCAGGCCGTATGGGCCGAGCTAATCTTAGCCTCACTCTCTGCTCC
CCAGGTCAGTTTTCTTGGACACTTGTGTGGAATACTAGCTGGTTATACTT
ATCTCAAGTTTGCAAGGACAATGGGTTTAATGAGACAGAGACGAGCCTCC
AGAAGACCAGTCTGGCGTTATGATTGA
back to top