Gcaud8304.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8304.t1
Unique Name	Gcaud8304.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	308

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_790_length_17954_cov_4.439568	contig	NODE_790_length_17954_cov_4.439568:180..1103 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX34330
PFAMs	Amino_oxidase,NAD_binding_8
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00885
KEGG ko	ko:K00231
KEGG Reaction	R03222,R04178
KEGG Pathway	ko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG Module	M00121
GOs	GO:0003674,GO:0003824,GO:0004729,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006928,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0016634,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0040011,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0048870,GO:0051179,GO:0051186,GO:0051188,GO:0051674,GO:0055114,GO:0070818,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue	3.45e-98
EggNOG OGs	COG1232@1\|root,KOG1276@2759\|Eukaryota
EC	1.3.3.15,1.3.3.4
Description	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8304	Gcaud8304	Gracilaria caudata M_176_S67 male	gene	NODE_790_length_17954_cov_4.439568 180..1103 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8304.t1.start1	Gcaud8304.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_790_length_17954_cov_4.439568 180..182 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8304.t1.CDS1	Gcaud8304.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_790_length_17954_cov_4.439568 180..1103 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8304.t1.exon1	Gcaud8304.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_790_length_17954_cov_4.439568 180..1103 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8304.t1.stop1	Gcaud8304.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_790_length_17954_cov_4.439568 1101..1103 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8304.t1	Gcaud8304.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_790_length_17954_cov_4.439568 180..1103 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_790_length_17954_cov_4.439568:180..1103+
coding sequence from alignment at NODE_790_length_17954_cov_4.439568:180..1103+

mRNA sequence

>Gcaud8304.t1 ID=Gcaud8304.t1|Name=Gcaud8304.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=308bp
MQSAFKKIFALTKLGGTQGILEGGIIRIGQKKREREQNPPDEDLPKWKGG
ALGSFRDGLAMLPNAIRSQLGDKIRLEWRLVDVTRAEDSLYKAVFDTPEG
RKEILTKAIAMTTPASVAASTLKTLAPEVAALEKVYYPPVWSVTLAYPKS
EFKEPLRGFGNLIPRKLGIRTLGTIWSSVLFPGRAPDDMELLLSYIGGAR
DQGIKELSEEEVVQAVDKDVKRILLKSDSQVEPVVVGARRWERAIPQYNV
GHQQVLDTAMEALKDDEGVFLGGNYVHGVAFGDCVAWGADYAPLIAEYVN
RMAAVNK*

spliced messenger RNA

>Gcaud8304.t1 ID=Gcaud8304.t1|Name=Gcaud8304.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=924bp|location=Sequence derived from alignment at NODE_790_length_17954_cov_4.439568:180..1103+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
atgcaatctgcattcaagaagatctttgcgcttacaaagctcggcggcac
gcaaGGAATTCTAGAGGGGGGTATCATCAGAATTGGCCAGAAGAAGAGAG
AGCGCGAGCAAAATCCGCCAGACGAGGACCTACCCAAATGGAAAGGCGGC
GCATTAGGAAGTTTTCGGGATGGATTGGCGATGTTACCGAACGCGATTCG
CAGCCAACTGGGCGATAAGATCAGGCTTGAGTGGCGACTGGTGGACGTGA
CGCGCGCGGAGGATTCTCTGTACAAGGCCGTTTTTGATACACCTGAAGGG
CGAAAAGAGATTTTGACGAAGGCTATTGCAATGACCACACCTGCAAGTGT
AGCCGCTTCCACGCTCAAGACGCTGGCACCGGAAGTGGCAGCTTTGGAAA
AGGTGTACTACCCACCGGTGTGGAGTGTAACGCTCGCGTATCCCAAGAGT
GAGTTCAAGGAGCCTTTGCGAGGATTCGGAAACCTGATTCCGCGAAAGCT
GGGAATCAGGACATTGGGTACTATATGGTCAAGTGTGCTGTTCCCCGGCA
GGGCGCCCGATGATATGGAACTGCTTCTGTCGTACATAGGCGGAGCACGC
GATCAGGGCATTAAGGAGCTGAGCGAGGAAGAAGTGGTGCAGGCTGTCGA
CAAGGATGTGAAACGCATTTTGCTAAAGAGCGACTCGCAGGTGGAACCGG
TTGTTGTTGGGGCGAGGAGATGGGAGCGAGCTATTCCGCAGTACAATGTC
GGGCATCAACAGGTATTGGACACGGCTATGGAGGCTCTCAAAGACGACGA
AGGTGTGTTCCTGGGAGGTAATTACGTTCATGGCGTGGCGTTTGGTGACT
GCGTGGCGTGGGGCGCGGACTACGCGCCGCTAATTGCAGAGTACGTGAAT
CGAATGGCAGCAGTGAACAAATAG

protein sequence of Gcaud8304.t1

>Gcaud8304.t1 ID=Gcaud8304.t1|Name=Gcaud8304.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=308bp
MQSAFKKIFALTKLGGTQGILEGGIIRIGQKKREREQNPPDEDLPKWKGG
ALGSFRDGLAMLPNAIRSQLGDKIRLEWRLVDVTRAEDSLYKAVFDTPEG
RKEILTKAIAMTTPASVAASTLKTLAPEVAALEKVYYPPVWSVTLAYPKS
EFKEPLRGFGNLIPRKLGIRTLGTIWSSVLFPGRAPDDMELLLSYIGGAR
DQGIKELSEEEVVQAVDKDVKRILLKSDSQVEPVVVGARRWERAIPQYNV
GHQQVLDTAMEALKDDEGVFLGGNYVHGVAFGDCVAWGADYAPLIAEYVN
RMAAVNK*

mRNA from alignment at NODE_790_length_17954_cov_4.439568:180..1103+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8304.t1 ID=Gcaud8304.t1|Name=Gcaud8304.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=924bp|location=Sequence derived from alignment at NODE_790_length_17954_cov_4.439568:180..1103+ (Gracilaria caudata M_176_S67 male)
atgcaatctgcattcaagaagatctttgcgcttacaaagctcggcggcac
gcaaGGAATTCTAGAGGGGGGTATCATCAGAATTGGCCAGAAGAAGAGAG
AGCGCGAGCAAAATCCGCCAGACGAGGACCTACCCAAATGGAAAGGCGGC
GCATTAGGAAGTTTTCGGGATGGATTGGCGATGTTACCGAACGCGATTCG
CAGCCAACTGGGCGATAAGATCAGGCTTGAGTGGCGACTGGTGGACGTGA
CGCGCGCGGAGGATTCTCTGTACAAGGCCGTTTTTGATACACCTGAAGGG
CGAAAAGAGATTTTGACGAAGGCTATTGCAATGACCACACCTGCAAGTGT
AGCCGCTTCCACGCTCAAGACGCTGGCACCGGAAGTGGCAGCTTTGGAAA
AGGTGTACTACCCACCGGTGTGGAGTGTAACGCTCGCGTATCCCAAGAGT
GAGTTCAAGGAGCCTTTGCGAGGATTCGGAAACCTGATTCCGCGAAAGCT
GGGAATCAGGACATTGGGTACTATATGGTCAAGTGTGCTGTTCCCCGGCA
GGGCGCCCGATGATATGGAACTGCTTCTGTCGTACATAGGCGGAGCACGC
GATCAGGGCATTAAGGAGCTGAGCGAGGAAGAAGTGGTGCAGGCTGTCGA
CAAGGATGTGAAACGCATTTTGCTAAAGAGCGACTCGCAGGTGGAACCGG
TTGTTGTTGGGGCGAGGAGATGGGAGCGAGCTATTCCGCAGTACAATGTC
GGGCATCAACAGGTATTGGACACGGCTATGGAGGCTCTCAAAGACGACGA
AGGTGTGTTCCTGGGAGGTAATTACGTTCATGGCGTGGCGTTTGGTGACT
GCGTGGCGTGGGGCGCGGACTACGCGCCGCTAATTGCAGAGTACGTGAAT
CGAATGGCAGCAGTGAACAAATAG

Coding sequence (CDS) from alignment at NODE_790_length_17954_cov_4.439568:180..1103+

>Gcaud8304.t1 ID=Gcaud8304.t1|Name=Gcaud8304.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=924bp|location=Sequence derived from alignment at NODE_790_length_17954_cov_4.439568:180..1103+ (Gracilaria caudata M_176_S67 male)
atgcaatctgcattcaagaagatctttgcgcttacaaagctcggcggcac
gcaaGGAATTCTAGAGGGGGGTATCATCAGAATTGGCCAGAAGAAGAGAG
AGCGCGAGCAAAATCCGCCAGACGAGGACCTACCCAAATGGAAAGGCGGC
GCATTAGGAAGTTTTCGGGATGGATTGGCGATGTTACCGAACGCGATTCG
CAGCCAACTGGGCGATAAGATCAGGCTTGAGTGGCGACTGGTGGACGTGA
CGCGCGCGGAGGATTCTCTGTACAAGGCCGTTTTTGATACACCTGAAGGG
CGAAAAGAGATTTTGACGAAGGCTATTGCAATGACCACACCTGCAAGTGT
AGCCGCTTCCACGCTCAAGACGCTGGCACCGGAAGTGGCAGCTTTGGAAA
AGGTGTACTACCCACCGGTGTGGAGTGTAACGCTCGCGTATCCCAAGAGT
GAGTTCAAGGAGCCTTTGCGAGGATTCGGAAACCTGATTCCGCGAAAGCT
GGGAATCAGGACATTGGGTACTATATGGTCAAGTGTGCTGTTCCCCGGCA
GGGCGCCCGATGATATGGAACTGCTTCTGTCGTACATAGGCGGAGCACGC
GATCAGGGCATTAAGGAGCTGAGCGAGGAAGAAGTGGTGCAGGCTGTCGA
CAAGGATGTGAAACGCATTTTGCTAAAGAGCGACTCGCAGGTGGAACCGG
TTGTTGTTGGGGCGAGGAGATGGGAGCGAGCTATTCCGCAGTACAATGTC
GGGCATCAACAGGTATTGGACACGGCTATGGAGGCTCTCAAAGACGACGA
AGGTGTGTTCCTGGGAGGTAATTACGTTCATGGCGTGGCGTTTGGTGACT
GCGTGGCGTGGGGCGCGGACTACGCGCCGCTAATTGCAGAGTACGTGAAT
CGAATGGCAGCAGTGAACAAATAG