Gcaud8302.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8302.t1
Unique NameGcaud8302.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length100
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5600_length_1505_cov_4.568600contigNODE_5600_length_1505_cov_4.568600:189..488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog264462.Bd3602
Preferred namepepF
PFAMsPeptidase_M3,Peptidase_M3_N
Max annot lvl213481|Bdellovibrionales
KEGG koko:K08602
Evalue8.55e-11
EggNOG OGsCOG1164@1|root,COG1164@2|Bacteria,1MXAC@1224|Proteobacteria,42NAD@68525|delta/epsilon subdivisions,2MTIW@213481|Bdellovibrionales,2WKEY@28221|Deltaproteobacteria
DescriptionPFAM peptidase M3A and M3B, thimet oligopeptidase F
COG categoryE
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8302Gcaud8302Gracilaria caudata M_176_S67 malegeneNODE_5600_length_1505_cov_4.568600 189..488 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8302.t1.stop1Gcaud8302.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_5600_length_1505_cov_4.568600 189..191 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8302.t1.CDS1Gcaud8302.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_5600_length_1505_cov_4.568600 189..488 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8302.t1.exon1Gcaud8302.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_5600_length_1505_cov_4.568600 189..488 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8302.t1.start1Gcaud8302.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_5600_length_1505_cov_4.568600 486..488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8302.t1Gcaud8302.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_5600_length_1505_cov_4.568600 189..488 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8302.t1 ID=Gcaud8302.t1|Name=Gcaud8302.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=100bp
MTKAYLDVMFEVVDSHIEDNRRILELQAEVMGKELLDPWDLWATSPLETK
EDELLYDEAIEFIADAVGEYIPDAHDFVISMRDNERIESEIRENKNLAS*
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spliced messenger RNA

>Gcaud8302.t1 ID=Gcaud8302.t1|Name=Gcaud8302.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=300bp|location=Sequence derived from alignment at NODE_5600_length_1505_cov_4.568600:189..488- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTAAAGCATATCTCGACGTCATGTTCGAAGTGGTCGACAGTCATAT
CGAGGACAATAGACGAATATTGGAATTGCAGGCAGAAGTAATGGGCAAAG
AGCTTTTGGATCCGTGGGACCTTTGGGCTACATCGCCGCTTGAGACAAAG
GAGGACGAGCTTTTGTACGATGAAGCTATCGAATTCATTGCTGATGCAGT
CGGAGAGTATATTCCAGACGCGCATGATTTTGTGATAAGCATGAGGGATA
ACGAGCGCATAGAATCTGAAATTCGAGAAAACAAGAACCTTGCATCGTGA
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protein sequence of Gcaud8302.t1

>Gcaud8302.t1 ID=Gcaud8302.t1|Name=Gcaud8302.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=100bp
MTKAYLDVMFEVVDSHIEDNRRILELQAEVMGKELLDPWDLWATSPLETK
EDELLYDEAIEFIADAVGEYIPDAHDFVISMRDNERIESEIRENKNLAS*
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mRNA from alignment at NODE_5600_length_1505_cov_4.568600:189..488-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8302.t1 ID=Gcaud8302.t1|Name=Gcaud8302.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=300bp|location=Sequence derived from alignment at NODE_5600_length_1505_cov_4.568600:189..488- (Gracilaria caudata M_176_S67 male)
ATGACTAAAGCATATCTCGACGTCATGTTCGAAGTGGTCGACAGTCATAT
CGAGGACAATAGACGAATATTGGAATTGCAGGCAGAAGTAATGGGCAAAG
AGCTTTTGGATCCGTGGGACCTTTGGGCTACATCGCCGCTTGAGACAAAG
GAGGACGAGCTTTTGTACGATGAAGCTATCGAATTCATTGCTGATGCAGT
CGGAGAGTATATTCCAGACGCGCATGATTTTGTGATAAGCATGAGGGATA
ACGAGCGCATAGAATCTGAAATTCGAGAAAACAAGAACCTTGCATCGTGA
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Coding sequence (CDS) from alignment at NODE_5600_length_1505_cov_4.568600:189..488-

>Gcaud8302.t1 ID=Gcaud8302.t1|Name=Gcaud8302.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=300bp|location=Sequence derived from alignment at NODE_5600_length_1505_cov_4.568600:189..488- (Gracilaria caudata M_176_S67 male)
ATGACTAAAGCATATCTCGACGTCATGTTCGAAGTGGTCGACAGTCATAT
CGAGGACAATAGACGAATATTGGAATTGCAGGCAGAAGTAATGGGCAAAG
AGCTTTTGGATCCGTGGGACCTTTGGGCTACATCGCCGCTTGAGACAAAG
GAGGACGAGCTTTTGTACGATGAAGCTATCGAATTCATTGCTGATGCAGT
CGGAGAGTATATTCCAGACGCGCATGATTTTGTGATAAGCATGAGGGATA
ACGAGCGCATAGAATCTGAAATTCGAGAAAACAAGAACCTTGCATCGTGA
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