Gcaud830.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud830.t1
Unique Name	Gcaud830.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	392

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_490_length_23884_cov_4.522254	contig	NODE_490_length_23884_cov_4.522254:2..1175 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704692.1
PFAMs	GYR,YLP
Max annot lvl	2759\|Eukaryota
GOs	GO:0003674,GO:0005488,GO:0005515
Evalue	1.12e-06
EggNOG OGs	2CKD8@1\|root,2QVCG@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud830	Gcaud830	Gracilaria caudata M_176_S67 male	gene	NODE_490_length_23884_cov_4.522254 2..1175 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud830.t1.CDS1	Gcaud830.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_490_length_23884_cov_4.522254 2..1175 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud830.t1.exon1	Gcaud830.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_490_length_23884_cov_4.522254 2..1175 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud830.t1.stop1	Gcaud830.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_490_length_23884_cov_4.522254 1173..1175 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud830.t1	Gcaud830.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_490_length_23884_cov_4.522254 2..1175 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_490_length_23884_cov_4.522254:2..1175+
coding sequence from alignment at NODE_490_length_23884_cov_4.522254:2..1175+

mRNA sequence

>Gcaud830.t1 ID=Gcaud830.t1|Name=Gcaud830.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=392bp
XLKGRVEKLRLKQENLENQKRKVGEARSWEARQKDSHIKELHRAKAEMEA
KRQQIVLLARHAEKLRTNIHEMQEKYKSLNKKSLELQDKYLHPSLRELVV
SEAAKGGPVSEHLVNKTMEEIIPEIKSGLRGLHEVENQFHHASPIANVFT
LFCIYALAVSLVVTCVRYTMIAHRIMTLRRMLFMADMSILAIWFLICVCY
AAILIDPLEAMAREHGSVTMVVQILIMAGLIGNVVLRCVALCSNVSSKGF
TELLLVVFVAQHYYQAVWVPIVLDERVKANLWSYLGYAAINGSLAVYRAR
SLSRAMQTAQAEFCGATAGKWENSWLRSRVEKGIQYLEDLLTLGIPSEDT
DVECLSEGHTRTTRTERTRQGRKELIQMKCTPYSKRRDPRA*

spliced messenger RNA

>Gcaud830.t1 ID=Gcaud830.t1|Name=Gcaud830.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1174bp|location=Sequence derived from alignment at NODE_490_length_23884_cov_4.522254:2..1175+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
GCTCAAAGGCCGAGTCGAGAAACTCCGTCTGAAACAGGAAAATCTTGAGA
ATCAGAAGCGTAAGGTAGGCGAAGCTAGAAGCTGGGAGGCAAGGCAAAAG
GACTCGCATATCAAAGAGCTGCATCGGGCGAAAGCAGAGATGGAGGCGAA
AAGGCAGCAGATAGTGCTGCTAGCCAGACATGCTGAAAAGCTTCGAACCA
ACATTCATGAAATGCAAGAAAAGTACAAATCTCTGAACAAAAAGAGTTTG
GAGCTGCAAGACAAGTACCTGCACCCTTCGCTCCGAGAATTGGTTGTCAG
CGAAGCTGCAAAGGGGGGACCAGTGTCGGAGCACTTGGTTAATAAGACCA
TGGAGGAGATTATTCCAGAGATTAAGAGTGGCCTGCGCGGATTACACGAG
GTCGAGAACCAATTTCATCATGCTTCCCCTATAGCAAATGTGTTTACCCT
GTTTTGTATCTACGCTCTTGCTGTTTCTCTGGTTGTGACATGTGTGCGGT
ACACTATGATCGCTCACCGTATCATGACCTTGCGTCGAATGCTTTTTATG
GCAGACATGAGTATCTTGGCTATCTGGTTCCTCATTTGCGTCTGCTATGC
AGCGATTCTTATTGATCCACTTGAAGCTATGGCACGAGAGCACGGGAGCG
TCACTATGGTGGTTCAGATCCTAATTATGGCAGGCCTTATTGGGAACGTG
GTTTTAAGATGTGTTGCCCTTTGCTCCAATGTCAGCAGCAAAGGTTTCAC
TGAACTGCTCCTTGTTGTTTTCGTTGCGCAGCACTACTATCAGGCAGTGT
GGGTTCCAATTGTGTTGGATGAACGAGTGAAGGCCAATCTATGGTCATAT
CTGGGCTATGCCGCCATAAATGGGTCACTTGCTGTGTATCGTGCCCGTTC
TTTGTCTCGTGCAATGCAGACAGCGCAAGCAGAATTCTGTGGTGCGACTG
CTGGGAAGTGGGAGAATAGCTGGCTGAGGTCCCGAGTTGAAAAGGGCATC
CAATACCTAGAAGACTTACTTACGCTTGGAATCCCGTCGGAAGACACAGA
CGTAGAATGTCTGTCAGAAGGGCATACAAGGACAACCAGAACTGAGCGCA
CCAGACAAGGGAGAAAAGAGTTAATACAGATGAAGTGCACGCCGTATTCA
AAGCGCAGAGATCCAAGAGCATGA

protein sequence of Gcaud830.t1

>Gcaud830.t1 ID=Gcaud830.t1|Name=Gcaud830.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=392bp
XLKGRVEKLRLKQENLENQKRKVGEARSWEARQKDSHIKELHRAKAEMEA
KRQQIVLLARHAEKLRTNIHEMQEKYKSLNKKSLELQDKYLHPSLRELVV
SEAAKGGPVSEHLVNKTMEEIIPEIKSGLRGLHEVENQFHHASPIANVFT
LFCIYALAVSLVVTCVRYTMIAHRIMTLRRMLFMADMSILAIWFLICVCY
AAILIDPLEAMAREHGSVTMVVQILIMAGLIGNVVLRCVALCSNVSSKGF
TELLLVVFVAQHYYQAVWVPIVLDERVKANLWSYLGYAAINGSLAVYRAR
SLSRAMQTAQAEFCGATAGKWENSWLRSRVEKGIQYLEDLLTLGIPSEDT
DVECLSEGHTRTTRTERTRQGRKELIQMKCTPYSKRRDPRA*

mRNA from alignment at NODE_490_length_23884_cov_4.522254:2..1175+

Legend: CDSpolypeptideexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud830.t1 ID=Gcaud830.t1|Name=Gcaud830.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1174bp|location=Sequence derived from alignment at NODE_490_length_23884_cov_4.522254:2..1175+ (Gracilaria caudata M_176_S67 male)
GCTCAAAGGCCGAGTCGAGAAACTCCGTCTGAAACAGGAAAATCTTGAGA
ATCAGAAGCGTAAGGTAGGCGAAGCTAGAAGCTGGGAGGCAAGGCAAAAG
GACTCGCATATCAAAGAGCTGCATCGGGCGAAAGCAGAGATGGAGGCGAA
AAGGCAGCAGATAGTGCTGCTAGCCAGACATGCTGAAAAGCTTCGAACCA
ACATTCATGAAATGCAAGAAAAGTACAAATCTCTGAACAAAAAGAGTTTG
GAGCTGCAAGACAAGTACCTGCACCCTTCGCTCCGAGAATTGGTTGTCAG
CGAAGCTGCAAAGGGGGGACCAGTGTCGGAGCACTTGGTTAATAAGACCA
TGGAGGAGATTATTCCAGAGATTAAGAGTGGCCTGCGCGGATTACACGAG
GTCGAGAACCAATTTCATCATGCTTCCCCTATAGCAAATGTGTTTACCCT
GTTTTGTATCTACGCTCTTGCTGTTTCTCTGGTTGTGACATGTGTGCGGT
ACACTATGATCGCTCACCGTATCATGACCTTGCGTCGAATGCTTTTTATG
GCAGACATGAGTATCTTGGCTATCTGGTTCCTCATTTGCGTCTGCTATGC
AGCGATTCTTATTGATCCACTTGAAGCTATGGCACGAGAGCACGGGAGCG
TCACTATGGTGGTTCAGATCCTAATTATGGCAGGCCTTATTGGGAACGTG
GTTTTAAGATGTGTTGCCCTTTGCTCCAATGTCAGCAGCAAAGGTTTCAC
TGAACTGCTCCTTGTTGTTTTCGTTGCGCAGCACTACTATCAGGCAGTGT
GGGTTCCAATTGTGTTGGATGAACGAGTGAAGGCCAATCTATGGTCATAT
CTGGGCTATGCCGCCATAAATGGGTCACTTGCTGTGTATCGTGCCCGTTC
TTTGTCTCGTGCAATGCAGACAGCGCAAGCAGAATTCTGTGGTGCGACTG
CTGGGAAGTGGGAGAATAGCTGGCTGAGGTCCCGAGTTGAAAAGGGCATC
CAATACCTAGAAGACTTACTTACGCTTGGAATCCCGTCGGAAGACACAGA
CGTAGAATGTCTGTCAGAAGGGCATACAAGGACAACCAGAACTGAGCGCA
CCAGACAAGGGAGAAAAGAGTTAATACAGATGAAGTGCACGCCGTATTCA
AAGCGCAGAGATCCAAGAGCATGA

Coding sequence (CDS) from alignment at NODE_490_length_23884_cov_4.522254:2..1175+

>Gcaud830.t1 ID=Gcaud830.t1|Name=Gcaud830.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1174bp|location=Sequence derived from alignment at NODE_490_length_23884_cov_4.522254:2..1175+ (Gracilaria caudata M_176_S67 male)
GCTCAAAGGCCGAGTCGAGAAACTCCGTCTGAAACAGGAAAATCTTGAGA
ATCAGAAGCGTAAGGTAGGCGAAGCTAGAAGCTGGGAGGCAAGGCAAAAG
GACTCGCATATCAAAGAGCTGCATCGGGCGAAAGCAGAGATGGAGGCGAA
AAGGCAGCAGATAGTGCTGCTAGCCAGACATGCTGAAAAGCTTCGAACCA
ACATTCATGAAATGCAAGAAAAGTACAAATCTCTGAACAAAAAGAGTTTG
GAGCTGCAAGACAAGTACCTGCACCCTTCGCTCCGAGAATTGGTTGTCAG
CGAAGCTGCAAAGGGGGGACCAGTGTCGGAGCACTTGGTTAATAAGACCA
TGGAGGAGATTATTCCAGAGATTAAGAGTGGCCTGCGCGGATTACACGAG
GTCGAGAACCAATTTCATCATGCTTCCCCTATAGCAAATGTGTTTACCCT
GTTTTGTATCTACGCTCTTGCTGTTTCTCTGGTTGTGACATGTGTGCGGT
ACACTATGATCGCTCACCGTATCATGACCTTGCGTCGAATGCTTTTTATG
GCAGACATGAGTATCTTGGCTATCTGGTTCCTCATTTGCGTCTGCTATGC
AGCGATTCTTATTGATCCACTTGAAGCTATGGCACGAGAGCACGGGAGCG
TCACTATGGTGGTTCAGATCCTAATTATGGCAGGCCTTATTGGGAACGTG
GTTTTAAGATGTGTTGCCCTTTGCTCCAATGTCAGCAGCAAAGGTTTCAC
TGAACTGCTCCTTGTTGTTTTCGTTGCGCAGCACTACTATCAGGCAGTGT
GGGTTCCAATTGTGTTGGATGAACGAGTGAAGGCCAATCTATGGTCATAT
CTGGGCTATGCCGCCATAAATGGGTCACTTGCTGTGTATCGTGCCCGTTC
TTTGTCTCGTGCAATGCAGACAGCGCAAGCAGAATTCTGTGGTGCGACTG
CTGGGAAGTGGGAGAATAGCTGGCTGAGGTCCCGAGTTGAAAAGGGCATC
CAATACCTAGAAGACTTACTTACGCTTGGAATCCCGTCGGAAGACACAGA
CGTAGAATGTCTGTCAGAAGGGCATACAAGGACAACCAGAACTGAGCGCA
CCAGACAAGGGAGAAAAGAGTTAATACAGATGAAGTGCACGCCGTATTCA
AAGCGCAGAGATCCAAGAGCATGA