Gcaud8295.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8295.t1
Unique NameGcaud8295.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length239
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1536_length_9880_cov_4.761263contigNODE_1536_length_9880_cov_4.761263:4105..4949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003284166.1
PFAMsClathrin,Clathrin-link,Clathrin_H_link,Clathrin_propel
Max annot lvl554915|Amoebozoa
KEGG koko:K04646
KEGG Pathwayko04142,ko04144,ko04721,ko04961,ko05016,ko05100,map04142,map04144,map04721,map04961,map05016,map05100
GOsGO:0000278,GO:0000281,GO:0000910,GO:0000912,GO:0000915,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006897,GO:0006898,GO:0006907,GO:0006950,GO:0006970,GO:0006996,GO:0007010,GO:0007033,GO:0007034,GO:0007041,GO:0007049,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009628,GO:0009653,GO:0009987,GO:0009991,GO:0016020,GO:0016043,GO:0016192,GO:0022402,GO:0022607,GO:0030029,GO:0030036,GO:0030117,GO:0030118,GO:0030154,GO:0030435,GO:0030587,GO:0030865,GO:0030866,GO:0031032,GO:0031152,GO:0031667,GO:0031668,GO:0031669,GO:0032502,GO:0032506,GO:0032991,GO:0033554,GO:0034622,GO:0042594,GO:0043933,GO:0043934,GO:0044085,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0044764,GO:0044837,GO:0048268,GO:0048475,GO:0048646,GO:0048856,GO:0048869,GO:0050896,GO:0051179,GO:0051234,GO:0051301,GO:0051703,GO:0051704,GO:0051716,GO:0061640,GO:0065003,GO:0071439,GO:0071496,GO:0071840,GO:0072583,GO:0090702,GO:0098630,GO:0098657,GO:0098743,GO:0098796,GO:0099120,GO:1903047
Evalue3.17e-30
EggNOG OGsKOG0985@1|root,KOG0985@2759|Eukaryota,3X8BV@554915|Amoebozoa
DescriptionClathrin is the major protein of the polyhedral coat of coated pits and vesicles
COG categoryU
BRITEko00000,ko00001,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8295Gcaud8295Gracilaria caudata M_176_S67 malegeneNODE_1536_length_9880_cov_4.761263 4105..4949 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8295.t1Gcaud8295.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1536_length_9880_cov_4.761263 4105..4949 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8295.t1.stop1Gcaud8295.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1536_length_9880_cov_4.761263 4105..4107 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8295.t1.CDS1Gcaud8295.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1536_length_9880_cov_4.761263 4105..4446 -
Gcaud8295.t1.CDS2Gcaud8295.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1536_length_9880_cov_4.761263 4575..4949 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8295.t1.exon1Gcaud8295.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1536_length_9880_cov_4.761263 4105..4446 -
Gcaud8295.t1.exon2Gcaud8295.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1536_length_9880_cov_4.761263 4575..4949 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8295.t1.intron1Gcaud8295.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1536_length_9880_cov_4.761263 4447..4574 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8295.t1.start1Gcaud8295.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1536_length_9880_cov_4.761263 4947..4949 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8295.t1 ID=Gcaud8295.t1|Name=Gcaud8295.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=239bp
MAAPLNVKHAFSLLSLGVAPTSLTFPTATLSSDRAITIRDQPPFKPPSLV
ILHTASPTTPSRRPISADAALLHPERNWLAVRVGVNVSVLDLASKKKLYE
AVLPDAVAFWHWIGHDLLAIVTLTTAQQGGVVGHVQLFLCAKNMLQILSA
HAASFAILTLDDYTTNLFLFPSGAQNEETGKTESLLRIVEVSGSRFGKIS
TEIYYPPEFASDFPIALHVSAKYPTIVYLIAKMSYIHL*
back to top

spliced messenger RNA

>Gcaud8295.t1 ID=Gcaud8295.t1|Name=Gcaud8295.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=717bp|location=Sequence derived from alignment at NODE_1536_length_9880_cov_4.761263:4105..4949- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCACCTCTTAACGTCAAGCACGCTTTCTCGCTGCTGTCGCTGGG
CGTGGCGCCCACCAGCCTCACCTTTCCCACAGCCACTCTCTCTTCCGACC
GCGCCATTACCATCCGTGACCAACCGCCCTTCAAGCCACCATCGCTCGTC
ATCCTGCATACGGCCAGCCCGACCACACCCTCCCGCCGCCCGATCTCCGC
GGACGCCGCCTTACTCCATCCCGAGCGTAACTGGCTCGCCGTGCGCGTTG
GCGTTAACGTTTCTGTACTAGACCTAGCCTCCAAGAAGAAGCTGTACGAG
GCCGTCCTGCCCGACGCTGTCGCCTTTTGGCACTGGATCGGTCATGATCT
GCTCGCCATTGTTACCCTCACAACCGCGCAGCAGGGCGGCGTCGTTGGAC
ATGTACAGCTTTTCTTGTGTGCGAAGAACATGTTGCAAATCCTGTCGGCG
CACGCCGCATCTTTTGCCATACTGACACTTGATGACTATACTACCAATCT
GTTTCTGTTTCCCTCTGGCGCCCAAAACGAGGAAACAGGCAAAACTGAGT
CGCTACTGCGTATCGTTGAGGTGAGCGGTTCCCGCTTTGGAAAGATCTCT
ACGGAGATCTACTACCCACCTGAATTTGCCTCTGACTTTCCAATCGCGCT
GCACGTATCGGCCAAGTATCCTACAATTGTTTACTTGATCGCAAAAATGA
GTTATATACATTTGTAG
back to top

protein sequence of Gcaud8295.t1

>Gcaud8295.t1 ID=Gcaud8295.t1|Name=Gcaud8295.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=239bp
MAAPLNVKHAFSLLSLGVAPTSLTFPTATLSSDRAITIRDQPPFKPPSLV
ILHTASPTTPSRRPISADAALLHPERNWLAVRVGVNVSVLDLASKKKLYE
AVLPDAVAFWHWIGHDLLAIVTLTTAQQGGVVGHVQLFLCAKNMLQILSA
HAASFAILTLDDYTTNLFLFPSGAQNEETGKTESLLRIVEVSGSRFGKIS
TEIYYPPEFASDFPIALHVSAKYPTIVYLIAKMSYIHL*
back to top

mRNA from alignment at NODE_1536_length_9880_cov_4.761263:4105..4949-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8295.t1 ID=Gcaud8295.t1|Name=Gcaud8295.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=845bp|location=Sequence derived from alignment at NODE_1536_length_9880_cov_4.761263:4105..4949- (Gracilaria caudata M_176_S67 male)
ATGGCGGCACCTCTTAACGTCAAGCACGCTTTCTCGCTGCTGTCGCTGGG
CGTGGCGCCCACCAGCCTCACCTTTCCCACAGCCACTCTCTCTTCCGACC
GCGCCATTACCATCCGTGACCAACCGCCCTTCAAGCCACCATCGCTCGTC
ATCCTGCATACGGCCAGCCCGACCACACCCTCCCGCCGCCCGATCTCCGC
GGACGCCGCCTTACTCCATCCCGAGCGTAACTGGCTCGCCGTGCGCGTTG
GCGTTAACGTTTCTGTACTAGACCTAGCCTCCAAGAAGAAGCTGTACGAG
GCCGTCCTGCCCGACGCTGTCGCCTTTTGGCACTGGATCGGTCATGATCT
GCTCGCCATTGTTACCCTCACAACCGTCTTCAACTGGGAGCTTTCAGAAG
AACCCCAACCAGTGTTCGAGCGCCACGATACCCTTCTTAACTTCCAGGTC
ATGGCTACTTCGCGGATGCGTCGCAGAAGTGCCTCGCCATCACTGCGCTC
TAGGCGCAGCAGGGCGGCGTCGTTGGACATGTACAGCTTTTCTTGTGTGC
GAAGAACATGTTGCAAATCCTGTCGGCGCACGCCGCATCTTTTGCCATAC
TGACACTTGATGACTATACTACCAATCTGTTTCTGTTTCCCTCTGGCGCC
CAAAACGAGGAAACAGGCAAAACTGAGTCGCTACTGCGTATCGTTGAGGT
GAGCGGTTCCCGCTTTGGAAAGATCTCTACGGAGATCTACTACCCACCTG
AATTTGCCTCTGACTTTCCAATCGCGCTGCACGTATCGGCCAAGTATCCT
ACAATTGTTTACTTGATCGCAAAAATGAGTTATATACATTTGTAG
back to top

Coding sequence (CDS) from alignment at NODE_1536_length_9880_cov_4.761263:4105..4949-

>Gcaud8295.t1 ID=Gcaud8295.t1|Name=Gcaud8295.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=717bp|location=Sequence derived from alignment at NODE_1536_length_9880_cov_4.761263:4105..4949- (Gracilaria caudata M_176_S67 male)
ATGGCGGCACCTCTTAACGTCAAGCACGCTTTCTCGCTGCTGTCGCTGGG
CGTGGCGCCCACCAGCCTCACCTTTCCCACAGCCACTCTCTCTTCCGACC
GCGCCATTACCATCCGTGACCAACCGCCCTTCAAGCCACCATCGCTCGTC
ATCCTGCATACGGCCAGCCCGACCACACCCTCCCGCCGCCCGATCTCCGC
GGACGCCGCCTTACTCCATCCCGAGCGTAACTGGCTCGCCGTGCGCGTTG
GCGTTAACGTTTCTGTACTAGACCTAGCCTCCAAGAAGAAGCTGTACGAG
GCCGTCCTGCCCGACGCTGTCGCCTTTTGGCACTGGATCGGTCATGATCT
GCTCGCCATTGTTACCCTCACAACCGCGCAGCAGGGCGGCGTCGTTGGAC
ATGTACAGCTTTTCTTGTGTGCGAAGAACATGTTGCAAATCCTGTCGGCG
CACGCCGCATCTTTTGCCATACTGACACTTGATGACTATACTACCAATCT
GTTTCTGTTTCCCTCTGGCGCCCAAAACGAGGAAACAGGCAAAACTGAGT
CGCTACTGCGTATCGTTGAGGTGAGCGGTTCCCGCTTTGGAAAGATCTCT
ACGGAGATCTACTACCCACCTGAATTTGCCTCTGACTTTCCAATCGCGCT
GCACGTATCGGCCAAGTATCCTACAATTGTTTACTTGATCGCAAAAATGA
GTTATATACATTTGTAG
back to top