Gcaud8289.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8289.t1
Unique Name	Gcaud8289.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	762

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_572_length_21721_cov_4.382386	contig	NODE_572_length_21721_cov_4.382386:12893..15267 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	373994.Riv7116_5989
Preferred name	amgP
PFAMs	APH
Max annot lvl	2\|Bacteria
Evalue	5.29e-12
EggNOG OGs	COG3173@1\|root,COG3173@2\|Bacteria
Description	very-long-chain-acyl-CoA dehydrogenase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8289	Gcaud8289	Gracilaria caudata M_176_S67 male	gene	NODE_572_length_21721_cov_4.382386 12893..15267 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8289.t1	Gcaud8289.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_572_length_21721_cov_4.382386 12893..15267 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8289.t1.start1	Gcaud8289.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_572_length_21721_cov_4.382386 12893..12895 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8289.t1.CDS1	Gcaud8289.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_572_length_21721_cov_4.382386 12893..14602 +
Gcaud8289.t1.CDS2	Gcaud8289.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_572_length_21721_cov_4.382386 14692..15267 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8289.t1.exon1	Gcaud8289.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_572_length_21721_cov_4.382386 12893..14602 +
Gcaud8289.t1.exon2	Gcaud8289.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_572_length_21721_cov_4.382386 14692..15267 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8289.t1.intron1	Gcaud8289.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_572_length_21721_cov_4.382386 14603..14691 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8289.t1.stop1	Gcaud8289.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_572_length_21721_cov_4.382386 15265..15267 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_572_length_21721_cov_4.382386:12893..15267+
coding sequence from alignment at NODE_572_length_21721_cov_4.382386:12893..15267+

mRNA sequence

>Gcaud8289.t1 ID=Gcaud8289.t1|Name=Gcaud8289.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=762bp
MGYLDYNAAWYERRGRFKQVRNMPYSTVLSCKVEEIRLCGNRVVDWRTDG
SIYVKVSHPNVPEALLCTTVSTALYGYVPMVLAVDEERNALVQVGARRVD
YSDPAAVVRMIADFHIASISHIDDLRAGGVPDRGLKWLSSNLTNILYHPI
LDICNDKENLHSLRKRTDELHCILAQLMSFGIPETLVHGDCEEQNIRCGL
EPKHGLCFIDWANCCIGPQFFDLYRLTIEDSWGFNSLKGAIDSYFDARKG
SPCQFKMPLAFSHIPSMFSCYNLSVLLDMYEMLEPIERPMLLQVLEDRVG
RICDTLNRDSEVGPGSWEGDDEQPNTYHVVIPSPDACSLLAHRSKSQISL
PVLNPRKTERSEWIINWDKDTGRLHDVIKAEIGLDVFILRPLWVRPDSQY
GLEEVVLLVEIVDDCLEVTNGFEWISREDALKKEWAEIDHRFDTKEQLYS
ILDNNSVSAMERKWMPWRFPGWFGKTVTWIGSALSNQNLEVKGPVSVVRK
TFLGCIMKFKVRLDARQVDSPLKDDVVFVKAGHTNLLTAPAISAISDMLP
DIAPRLLAVNVYRNLYMEWNQLKNAGVPVYTVEWVRANIREISQYPLVDR
CKDGNSVTRFRANLSRLEVCFEELESYNIPDTLLHGDFHAGNVGSDMNNS
YYHIFDWNSSFIGHPFCDFAVMQRSEYEPEKEQETAERAYFQRWDKYGNK
ETLQRVSELALIAYFCIELHRLQDVSEAVETEDYESVIRMCSDAIDTVLY
GLKVRFGDDAS*

spliced messenger RNA

>Gcaud8289.t1 ID=Gcaud8289.t1|Name=Gcaud8289.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2286bp|location=Sequence derived from alignment at NODE_572_length_21721_cov_4.382386:12893..15267+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTATCTCGATTATAACGCAGCATGGTATGAACGTCGTGGAAGGTT
CAAACAGGTAAGAAACATGCCTTATTCCACTGTTTTGTCGTGTAAGGTGG
AAGAAATTCGTCTTTGCGGAAATCGCGTTGTAGACTGGCGCACCGATGGG
TCAATTTACGTCAAAGTATCGCACCCTAATGTCCCAGAAGCGTTGTTATG
TACGACGGTGTCGACCGCACTCTACGGTTATGTCCCAATGGTTTTGGCGG
TAGATGAAGAGCGAAACGCATTGGTACAGGTTGGTGCGCGACGAGTGGAT
TATTCAGACCCGGCAGCTGTCGTAAGAATGATTGCAGATTTCCACATCGC
TTCAATCTCGCACATCGATGATCTAAGAGCGGGAGGCGTTCCAGATCGAG
GACTAAAATGGCTTTCCTCTAATTTGACAAACATTCTTTATCATCCCATC
CTCGACATCTGTAATGACAAAGAGAACCTTCACTCGTTGAGAAAACGAAC
AGATGAGCTGCATTGCATTCTGGCTCAGCTTATGAGCTTTGGCATCCCAG
AGACACTGGTTCATGGTGATTGTGAAGAGCAAAATATTAGATGTGGTCTG
GAACCAAAACATGGATTGTGTTTCATCGATTGGGCGAACTGTTGTATCGG
ACCCCAATTCTTTGATCTCTACCGTTTAACTATTGAAGACAGTTGGGGTT
TCAACTCTTTGAAAGGTGCTATAGATTCATACTTCGACGCTCGGAAAGGA
TCCCCCTGTCAATTCAAAATGCCACTGGCATTTTCCCACATTCCTTCTAT
GTTTTCGTGCTACAACCTAAGTGTTTTGCTGGATATGTATGAAATGTTGG
AGCCAATTGAGAGGCCGATGCTACTTCAAGTCCTGGAAGATCGAGTGGGA
CGTATTTGTGACACCTTAAACCGGGATAGTGAAGTTGGTCCAGGCTCATG
GGAAGGAGATGATGAACAACCTAACACTTATCATGTCGTCATTCCCTCGC
CCGACGCGTGCTCTTTACTTGCTCATCGATCAAAATCTCAGATAAGCCTC
CCAGTGCTCAATCCACGGAAAACCGAAAGGTCTGAATGGATCATCAATTG
GGACAAAGACACCGGTAGATTACACGACGTCATTAAAGCTGAGATTGGGT
TAGACGTATTTATTCTACGACCTCTTTGGGTACGCCCCGACTCCCAATAT
GGTCTTGAGGAAGTTGTGTTACTTGTGGAGATTGTAGATGATTGCTTGGA
GGTAACAAATGGTTTTGAGTGGATAAGTCGCGAAGATGCTCTGAAGAAAG
AATGGGCGGAGATTGACCACAGGTTTGATACCAAAGAACAGCTATATTCC
ATACTGGATAACAATTCAGTAAGCGCGATGGAAAGGAAATGGATGCCATG
GCGCTTTCCGGGCTGGTTCGGGAAAACTGTGACTTGGATCGGTTCGGCGC
TTTCTAACCAGAACTTAGAAGTGAAAGGACCTGTGTCAGTGGTCCGAAAG
ACATTCCTTGGGTGCATAATGAAGTTCAAAGTTCGTCTTGATGCTCGACA
AGTAGACAGTCCACTCAAGGACGACGTCGTGTTCGTCAAAGCTGGGCACA
CCAACCTATTAACGGCACCTGCAATTTCGGCTATATCTGACATGCTCCCT
GATATTGCGCCACGCCTTTTGGCAGTGAATGTTTATCGCAACTTGTACAT
GGAGTGGAATCAACTCAAAAACGCTGGAGTGCCCGTGTACACAGTGGAAT
GGGTGCGCGCAAATATTCGAGAGATCTCGCAGTACCCCCTTGTTGATCGA
TGTAAAGATGGGAACTCCGTGACAAGATTTCGTGCTAACCTCTCTCGACT
GGAGGTATGTTTTGAAGAGTTAGAATCTTACAACATTCCAGATACTCTTC
TACACGGTGATTTCCATGCCGGAAATGTGGGGAGCGATATGAACAATTCT
TATTACCATATATTTGACTGGAACAGCTCCTTCATTGGACATCCGTTCTG
CGATTTTGCTGTGATGCAAAGGTCAGAATACGAACCCGAGAAGGAACAAG
AGACTGCTGAACGAGCGTACTTTCAACGTTGGGACAAGTATGGGAACAAG
GAGACACTGCAGCGAGTTTCAGAGCTAGCCTTAATTGCTTACTTCTGCAT
TGAACTCCACCGACTTCAAGATGTGTCCGAAGCCGTGGAGACCGAAGACT
ATGAGTCAGTCATAAGAATGTGCAGCGACGCAATAGACACTGTGCTCTAC
GGACTGAAAGTTCGATTTGGGGATGATGCTTCGTAG

protein sequence of Gcaud8289.t1

>Gcaud8289.t1 ID=Gcaud8289.t1|Name=Gcaud8289.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=762bp
MGYLDYNAAWYERRGRFKQVRNMPYSTVLSCKVEEIRLCGNRVVDWRTDG
SIYVKVSHPNVPEALLCTTVSTALYGYVPMVLAVDEERNALVQVGARRVD
YSDPAAVVRMIADFHIASISHIDDLRAGGVPDRGLKWLSSNLTNILYHPI
LDICNDKENLHSLRKRTDELHCILAQLMSFGIPETLVHGDCEEQNIRCGL
EPKHGLCFIDWANCCIGPQFFDLYRLTIEDSWGFNSLKGAIDSYFDARKG
SPCQFKMPLAFSHIPSMFSCYNLSVLLDMYEMLEPIERPMLLQVLEDRVG
RICDTLNRDSEVGPGSWEGDDEQPNTYHVVIPSPDACSLLAHRSKSQISL
PVLNPRKTERSEWIINWDKDTGRLHDVIKAEIGLDVFILRPLWVRPDSQY
GLEEVVLLVEIVDDCLEVTNGFEWISREDALKKEWAEIDHRFDTKEQLYS
ILDNNSVSAMERKWMPWRFPGWFGKTVTWIGSALSNQNLEVKGPVSVVRK
TFLGCIMKFKVRLDARQVDSPLKDDVVFVKAGHTNLLTAPAISAISDMLP
DIAPRLLAVNVYRNLYMEWNQLKNAGVPVYTVEWVRANIREISQYPLVDR
CKDGNSVTRFRANLSRLEVCFEELESYNIPDTLLHGDFHAGNVGSDMNNS
YYHIFDWNSSFIGHPFCDFAVMQRSEYEPEKEQETAERAYFQRWDKYGNK
ETLQRVSELALIAYFCIELHRLQDVSEAVETEDYESVIRMCSDAIDTVLY
GLKVRFGDDAS*

mRNA from alignment at NODE_572_length_21721_cov_4.382386:12893..15267+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8289.t1 ID=Gcaud8289.t1|Name=Gcaud8289.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2375bp|location=Sequence derived from alignment at NODE_572_length_21721_cov_4.382386:12893..15267+ (Gracilaria caudata M_176_S67 male)
ATGGGGTATCTCGATTATAACGCAGCATGGTATGAACGTCGTGGAAGGTT
CAAACAGGTAAGAAACATGCCTTATTCCACTGTTTTGTCGTGTAAGGTGG
AAGAAATTCGTCTTTGCGGAAATCGCGTTGTAGACTGGCGCACCGATGGG
TCAATTTACGTCAAAGTATCGCACCCTAATGTCCCAGAAGCGTTGTTATG
TACGACGGTGTCGACCGCACTCTACGGTTATGTCCCAATGGTTTTGGCGG
TAGATGAAGAGCGAAACGCATTGGTACAGGTTGGTGCGCGACGAGTGGAT
TATTCAGACCCGGCAGCTGTCGTAAGAATGATTGCAGATTTCCACATCGC
TTCAATCTCGCACATCGATGATCTAAGAGCGGGAGGCGTTCCAGATCGAG
GACTAAAATGGCTTTCCTCTAATTTGACAAACATTCTTTATCATCCCATC
CTCGACATCTGTAATGACAAAGAGAACCTTCACTCGTTGAGAAAACGAAC
AGATGAGCTGCATTGCATTCTGGCTCAGCTTATGAGCTTTGGCATCCCAG
AGACACTGGTTCATGGTGATTGTGAAGAGCAAAATATTAGATGTGGTCTG
GAACCAAAACATGGATTGTGTTTCATCGATTGGGCGAACTGTTGTATCGG
ACCCCAATTCTTTGATCTCTACCGTTTAACTATTGAAGACAGTTGGGGTT
TCAACTCTTTGAAAGGTGCTATAGATTCATACTTCGACGCTCGGAAAGGA
TCCCCCTGTCAATTCAAAATGCCACTGGCATTTTCCCACATTCCTTCTAT
GTTTTCGTGCTACAACCTAAGTGTTTTGCTGGATATGTATGAAATGTTGG
AGCCAATTGAGAGGCCGATGCTACTTCAAGTCCTGGAAGATCGAGTGGGA
CGTATTTGTGACACCTTAAACCGGGATAGTGAAGTTGGTCCAGGCTCATG
GGAAGGAGATGATGAACAACCTAACACTTATCATGTCGTCATTCCCTCGC
CCGACGCGTGCTCTTTACTTGCTCATCGATCAAAATCTCAGATAAGCCTC
CCAGTGCTCAATCCACGGAAAACCGAAAGGTCTGAATGGATCATCAATTG
GGACAAAGACACCGGTAGATTACACGACGTCATTAAAGCTGAGATTGGGT
TAGACGTATTTATTCTACGACCTCTTTGGGTACGCCCCGACTCCCAATAT
GGTCTTGAGGAAGTTGTGTTACTTGTGGAGATTGTAGATGATTGCTTGGA
GGTAACAAATGGTTTTGAGTGGATAAGTCGCGAAGATGCTCTGAAGAAAG
AATGGGCGGAGATTGACCACAGGTTTGATACCAAAGAACAGCTATATTCC
ATACTGGATAACAATTCAGTAAGCGCGATGGAAAGGAAATGGATGCCATG
GCGCTTTCCGGGCTGGTTCGGGAAAACTGTGACTTGGATCGGTTCGGCGC
TTTCTAACCAGAACTTAGAAGTGAAAGGACCTGTGTCAGTGGTCCGAAAG
ACATTCCTTGGGTGCATAATGAAGTTCAAAGTTCGTCTTGATGCTCGACA
AGTAGACAGTCCACTCAAGGACGACGTCGTGTTCGTCAAAGCTGGGCACA
CCAACCTATTAACGGCACCTGCAATTTCGGCTATATCTGACATGCTCCCT
GATATTGCGCCACGCCTTTTGGCAGTGAATGTTTATCGCAACTTGTACAT
GGAGTGGAATGTCAGGTCTAATGTTCTGCACGTATCAACACGGAACTACT
CATGAAGACATTGGCGACTTTTCAGAAACGTTCGACTTCCCACCTAAAGC
AACTCAAAAACGCTGGAGTGCCCGTGTACACAGTGGAATGGGTGCGCGCA
AATATTCGAGAGATCTCGCAGTACCCCCTTGTTGATCGATGTAAAGATGG
GAACTCCGTGACAAGATTTCGTGCTAACCTCTCTCGACTGGAGGTATGTT
TTGAAGAGTTAGAATCTTACAACATTCCAGATACTCTTCTACACGGTGAT
TTCCATGCCGGAAATGTGGGGAGCGATATGAACAATTCTTATTACCATAT
ATTTGACTGGAACAGCTCCTTCATTGGACATCCGTTCTGCGATTTTGCTG
TGATGCAAAGGTCAGAATACGAACCCGAGAAGGAACAAGAGACTGCTGAA
CGAGCGTACTTTCAACGTTGGGACAAGTATGGGAACAAGGAGACACTGCA
GCGAGTTTCAGAGCTAGCCTTAATTGCTTACTTCTGCATTGAACTCCACC
GACTTCAAGATGTGTCCGAAGCCGTGGAGACCGAAGACTATGAGTCAGTC
ATAAGAATGTGCAGCGACGCAATAGACACTGTGCTCTACGGACTGAAAGT
TCGATTTGGGGATGATGCTTCGTAG

Coding sequence (CDS) from alignment at NODE_572_length_21721_cov_4.382386:12893..15267+

>Gcaud8289.t1 ID=Gcaud8289.t1|Name=Gcaud8289.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2286bp|location=Sequence derived from alignment at NODE_572_length_21721_cov_4.382386:12893..15267+ (Gracilaria caudata M_176_S67 male)
ATGGGGTATCTCGATTATAACGCAGCATGGTATGAACGTCGTGGAAGGTT
CAAACAGGTAAGAAACATGCCTTATTCCACTGTTTTGTCGTGTAAGGTGG
AAGAAATTCGTCTTTGCGGAAATCGCGTTGTAGACTGGCGCACCGATGGG
TCAATTTACGTCAAAGTATCGCACCCTAATGTCCCAGAAGCGTTGTTATG
TACGACGGTGTCGACCGCACTCTACGGTTATGTCCCAATGGTTTTGGCGG
TAGATGAAGAGCGAAACGCATTGGTACAGGTTGGTGCGCGACGAGTGGAT
TATTCAGACCCGGCAGCTGTCGTAAGAATGATTGCAGATTTCCACATCGC
TTCAATCTCGCACATCGATGATCTAAGAGCGGGAGGCGTTCCAGATCGAG
GACTAAAATGGCTTTCCTCTAATTTGACAAACATTCTTTATCATCCCATC
CTCGACATCTGTAATGACAAAGAGAACCTTCACTCGTTGAGAAAACGAAC
AGATGAGCTGCATTGCATTCTGGCTCAGCTTATGAGCTTTGGCATCCCAG
AGACACTGGTTCATGGTGATTGTGAAGAGCAAAATATTAGATGTGGTCTG
GAACCAAAACATGGATTGTGTTTCATCGATTGGGCGAACTGTTGTATCGG
ACCCCAATTCTTTGATCTCTACCGTTTAACTATTGAAGACAGTTGGGGTT
TCAACTCTTTGAAAGGTGCTATAGATTCATACTTCGACGCTCGGAAAGGA
TCCCCCTGTCAATTCAAAATGCCACTGGCATTTTCCCACATTCCTTCTAT
GTTTTCGTGCTACAACCTAAGTGTTTTGCTGGATATGTATGAAATGTTGG
AGCCAATTGAGAGGCCGATGCTACTTCAAGTCCTGGAAGATCGAGTGGGA
CGTATTTGTGACACCTTAAACCGGGATAGTGAAGTTGGTCCAGGCTCATG
GGAAGGAGATGATGAACAACCTAACACTTATCATGTCGTCATTCCCTCGC
CCGACGCGTGCTCTTTACTTGCTCATCGATCAAAATCTCAGATAAGCCTC
CCAGTGCTCAATCCACGGAAAACCGAAAGGTCTGAATGGATCATCAATTG
GGACAAAGACACCGGTAGATTACACGACGTCATTAAAGCTGAGATTGGGT
TAGACGTATTTATTCTACGACCTCTTTGGGTACGCCCCGACTCCCAATAT
GGTCTTGAGGAAGTTGTGTTACTTGTGGAGATTGTAGATGATTGCTTGGA
GGTAACAAATGGTTTTGAGTGGATAAGTCGCGAAGATGCTCTGAAGAAAG
AATGGGCGGAGATTGACCACAGGTTTGATACCAAAGAACAGCTATATTCC
ATACTGGATAACAATTCAGTAAGCGCGATGGAAAGGAAATGGATGCCATG
GCGCTTTCCGGGCTGGTTCGGGAAAACTGTGACTTGGATCGGTTCGGCGC
TTTCTAACCAGAACTTAGAAGTGAAAGGACCTGTGTCAGTGGTCCGAAAG
ACATTCCTTGGGTGCATAATGAAGTTCAAAGTTCGTCTTGATGCTCGACA
AGTAGACAGTCCACTCAAGGACGACGTCGTGTTCGTCAAAGCTGGGCACA
CCAACCTATTAACGGCACCTGCAATTTCGGCTATATCTGACATGCTCCCT
GATATTGCGCCACGCCTTTTGGCAGTGAATGTTTATCGCAACTTGTACAT
GGAGTGGAATCAACTCAAAAACGCTGGAGTGCCCGTGTACACAGTGGAAT
GGGTGCGCGCAAATATTCGAGAGATCTCGCAGTACCCCCTTGTTGATCGA
TGTAAAGATGGGAACTCCGTGACAAGATTTCGTGCTAACCTCTCTCGACT
GGAGGTATGTTTTGAAGAGTTAGAATCTTACAACATTCCAGATACTCTTC
TACACGGTGATTTCCATGCCGGAAATGTGGGGAGCGATATGAACAATTCT
TATTACCATATATTTGACTGGAACAGCTCCTTCATTGGACATCCGTTCTG
CGATTTTGCTGTGATGCAAAGGTCAGAATACGAACCCGAGAAGGAACAAG
AGACTGCTGAACGAGCGTACTTTCAACGTTGGGACAAGTATGGGAACAAG
GAGACACTGCAGCGAGTTTCAGAGCTAGCCTTAATTGCTTACTTCTGCAT
TGAACTCCACCGACTTCAAGATGTGTCCGAAGCCGTGGAGACCGAAGACT
ATGAGTCAGTCATAAGAATGTGCAGCGACGCAATAGACACTGTGCTCTAC
GGACTGAAAGTTCGATTTGGGGATGATGCTTCGTAG