Gcaud8284.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8284.t1
Unique NameGcaud8284.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length43
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_572_length_21721_cov_4.382386contigNODE_572_length_21721_cov_4.382386:1981..2390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8284Gcaud8284Gracilaria caudata M_176_S67 malegeneNODE_572_length_21721_cov_4.382386 1981..2390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8284.t1Gcaud8284.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_572_length_21721_cov_4.382386 1981..2390 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8284.t1.CDS1Gcaud8284.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_572_length_21721_cov_4.382386 1981..2014 +
Gcaud8284.t1.CDS2Gcaud8284.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_572_length_21721_cov_4.382386 2202..2264 +
Gcaud8284.t1.CDS3Gcaud8284.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_572_length_21721_cov_4.382386 2361..2390 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8284.t1.exon1Gcaud8284.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_572_length_21721_cov_4.382386 1981..2014 +
Gcaud8284.t1.exon2Gcaud8284.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_572_length_21721_cov_4.382386 2202..2264 +
Gcaud8284.t1.exon3Gcaud8284.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_572_length_21721_cov_4.382386 2361..2390 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8284.t1.intron1Gcaud8284.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_572_length_21721_cov_4.382386 2015..2201 +
Gcaud8284.t1.intron2Gcaud8284.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_572_length_21721_cov_4.382386 2265..2360 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8284.t1.stop1Gcaud8284.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_572_length_21721_cov_4.382386 2388..2390 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8284.t1 ID=Gcaud8284.t1|Name=Gcaud8284.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=43bp
XFRQYYPRLFLTQISFNSHHDCSSGWNQWLWSHWSSGASCRH*
back to top

spliced messenger RNA

>Gcaud8284.t1 ID=Gcaud8284.t1|Name=Gcaud8284.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=127bp|location=Sequence derived from alignment at NODE_572_length_21721_cov_4.382386:1981..2390+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTTTCGCCAGTACTACCCCCGCCTGTTTTTAACGCAAATCTCGTTCAACT
CTCATCATGACTGTTCCTCAGGTTGGAATCAATGGCTTTGGTCGCATTGG
TCGTCTGGTGCTTCGTGCCGCCATTGA
back to top

protein sequence of Gcaud8284.t1

>Gcaud8284.t1 ID=Gcaud8284.t1|Name=Gcaud8284.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=43bp
XFRQYYPRLFLTQISFNSHHDCSSGWNQWLWSHWSSGASCRH*
back to top

mRNA from alignment at NODE_572_length_21721_cov_4.382386:1981..2390+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8284.t1 ID=Gcaud8284.t1|Name=Gcaud8284.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=410bp|location=Sequence derived from alignment at NODE_572_length_21721_cov_4.382386:1981..2390+ (Gracilaria caudata M_176_S67 male)
TTTTCGCCAGTACTACCCCCGCCTGTTTTTAACGGTACGTTGTATAATAA
TGCGTGCTGTTCACCGTCGGCCGTGTGCCCCGGGATCGCGTGCTCGCAAG
CCATGATCTTCGCCCTGTTTCCGAGCCGATCTGCGCGCGATCGCCCGCTG
TGTGCGCCGGCGTTTGCGTCCTCTGTGCCGCTGTTCACTAACCGATCCAC
ATATCGTTCCAATCGCTGCAGCAAATCTCGTTCAACTCTCATCATGACTG
TTCCTCAGGTTGGAATCAATGGCTTTGGTCGCATGTAAGTTGCAATCTTT
CGCACCATCCCATCATCACCCCCGCCAAACGCAGCGCGCAGTTCCGATTT
GATCTAACCTTGTGTGCGGTTCTCATGTAGTGGTCGTCTGGTGCTTCGTG
CCGCCATTGA
back to top

Coding sequence (CDS) from alignment at NODE_572_length_21721_cov_4.382386:1981..2390+

>Gcaud8284.t1 ID=Gcaud8284.t1|Name=Gcaud8284.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=127bp|location=Sequence derived from alignment at NODE_572_length_21721_cov_4.382386:1981..2390+ (Gracilaria caudata M_176_S67 male)
TTTTCGCCAGTACTACCCCCGCCTGTTTTTAACGCAAATCTCGTTCAACT
CTCATCATGACTGTTCCTCAGGTTGGAATCAATGGCTTTGGTCGCATTGG
TCGTCTGGTGCTTCGTGCCGCCATTGA
back to top