Gcaud8281.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8281.t1
Unique NameGcaud8281.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length478
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_387_length_27166_cov_4.437230contigNODE_387_length_27166_cov_4.437230:8411..12001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708251.1
PFAMsTrp_Tyr_perm
Max annot lvl2759|Eukaryota
Evalue1.56e-47
EggNOG OGs2C3E9@1|root,2RZCA@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8281Gcaud8281Gracilaria caudata M_176_S67 malegeneNODE_387_length_27166_cov_4.437230 8411..12001 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8281.t1Gcaud8281.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_387_length_27166_cov_4.437230 8411..12001 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8281.t1.stop1Gcaud8281.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_387_length_27166_cov_4.437230 8411..8413 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8281.t1.CDS1Gcaud8281.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_387_length_27166_cov_4.437230 8411..8420 -
Gcaud8281.t1.CDS2Gcaud8281.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_387_length_27166_cov_4.437230 8557..8559 -
Gcaud8281.t1.CDS3Gcaud8281.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_387_length_27166_cov_4.437230 10465..10632 -
Gcaud8281.t1.CDS4Gcaud8281.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_387_length_27166_cov_4.437230 10749..12001 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8281.t1.exon1Gcaud8281.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_387_length_27166_cov_4.437230 8411..8420 -
Gcaud8281.t1.exon2Gcaud8281.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_387_length_27166_cov_4.437230 8557..8559 -
Gcaud8281.t1.exon3Gcaud8281.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_387_length_27166_cov_4.437230 10465..10632 -
Gcaud8281.t1.exon4Gcaud8281.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_387_length_27166_cov_4.437230 10749..12001 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8281.t1.intron1Gcaud8281.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_387_length_27166_cov_4.437230 8421..8556 -
Gcaud8281.t1.intron2Gcaud8281.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_387_length_27166_cov_4.437230 8560..10464 -
Gcaud8281.t1.intron3Gcaud8281.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_387_length_27166_cov_4.437230 10633..10748 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8281.t1.start1Gcaud8281.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_387_length_27166_cov_4.437230 11999..12001 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8281.t1 ID=Gcaud8281.t1|Name=Gcaud8281.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=478bp
MRPTLGALVQTTALSVATVLGTGILGLPVSLHASGLAPFVLLFSANLLAQ
LGVVAATTELLQRAYCAPHAAGYQALEVHAPATCQPPSLHSLAERFIPFA
APRRLFELVVLLHFLFILSAYAIAGPQAYVALFPALRALPIQLLQVLFVV
VSALLIVFAYQELLPSLTFATIAKAVILTALVSLTLARGLTIRQSITHSW
SPSRLVDPFLMGTIALSGVVNLMPVTFQKCVDSLPPDAPATVDAHFIAAY
RGATMLAIAICFVLNIVWCLAVLFVVPQTSPPNVTDVVRAAASQSLPCAS
LEDAYQRGQISTIPLMQVLKCRHDKLDSVISFIVDLFITVSITVSFLVMS
MGMKHYIDGSSKDTTQSDTEYDNSRRTKYVIYFSVVLVTALSNPEGIFRI
MEGVTTLALNIEAGIYILRVLLLAFKLVQAIELLAASILDICILPAPQLV
RSSPPLMWTPEFSIIFRYRSNILGSTL*
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spliced messenger RNA

>Gcaud8281.t1 ID=Gcaud8281.t1|Name=Gcaud8281.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1434bp|location=Sequence derived from alignment at NODE_387_length_27166_cov_4.437230:8411..12001- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCCGACGCTGGGCGCGCTGGTGCAGACCACCGCGCTGTCCGTGGC
CACAGTGCTGGGCACGGGCATTCTCGGGTTGCCTGTATCGCTGCACGCCT
CCGGTCTGGCGCCGTTCGTGCTGCTGTTCTCAGCCAACTTGCTGGCGCAG
CTGGGCGTAGTTGCCGCCACCACCGAGCTTCTTCAGCGCGCGTACTGCGC
GCCGCACGCAGCGGGTTACCAAGCCCTCGAAGTGCACGCGCCCGCGACTT
GTCAGCCGCCGTCGTTACACTCGCTCGCCGAGCGATTCATTCCGTTCGCC
GCCCCGCGCCGGCTGTTTGAGCTGGTAGTGTTGCTGCACTTTCTGTTCAT
TCTGTCTGCGTATGCCATTGCGGGCCCGCAGGCGTACGTTGCGCTCTTTC
CTGCACTGCGCGCCCTGCCGATCCAGCTGTTGCAGGTGCTGTTCGTGGTT
GTATCAGCGCTGCTGATCGTTTTCGCGTACCAGGAGCTGCTACCATCGCT
TACATTCGCCACAATTGCCAAGGCGGTCATACTCACCGCGCTGGTCTCCC
TCACATTGGCACGAGGGCTCACCATACGTCAGTCAATCACACACTCATGG
AGCCCCTCCCGACTCGTTGACCCATTCCTCATGGGCACCATCGCTCTGAG
TGGTGTCGTCAACCTCATGCCTGTCACCTTCCAAAAATGCGTAGATTCAT
TGCCCCCCGACGCACCAGCCACTGTTGATGCACACTTCATTGCCGCCTAC
CGCGGCGCTACTATGTTGGCCATTGCCATCTGTTTTGTCCTCAACATTGT
ATGGTGCTTGGCCGTTCTGTTTGTCGTTCCCCAGACCTCGCCTCCCAACG
TCACCGACGTTGTGCGAGCTGCTGCATCGCAATCTCTTCCATGCGCTTCT
CTTGAAGACGCCTATCAGCGAGGCCAGATTAGTACCATACCTCTGATGCA
GGTCTTGAAGTGTCGCCATGATAAGCTCGACTCCGTAATCTCTTTCATTG
TTGACCTTTTCATCACCGTCAGCATCACTGTTTCGTTCCTTGTAATGTCC
ATGGGAATGAAGCACTACATTGATGGTAGCTCCAAGGACACAACCCAATC
CGACACCGAATACGACAACAGTCGCCGCACTAAATACGTTATTTACTTCT
CGGTTGTGTTGGTTACCGCTCTCTCAAACCCAGAGGGTATTTTCAGGATC
ATGGAAGGTGTTACTACACTAGCGCTTAACATCGAGGCCGGTATTTACAT
TCTACGCGTTCTATTACTTGCCTTCAAGCTTGTTCAAGCGATAGAGCTCT
TGGCTGCTTCAATTCTAGATATCTGCATTTTGCCCGCTCCTCAGCTCGTT
CGATCCTCTCCTCCTTTAATGTGGACACCAGAGTTTTCGATCATCTTCCG
TTATCGATCTAATATTTTGGGAAGCACACTGTAA
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protein sequence of Gcaud8281.t1

>Gcaud8281.t1 ID=Gcaud8281.t1|Name=Gcaud8281.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=478bp
MRPTLGALVQTTALSVATVLGTGILGLPVSLHASGLAPFVLLFSANLLAQ
LGVVAATTELLQRAYCAPHAAGYQALEVHAPATCQPPSLHSLAERFIPFA
APRRLFELVVLLHFLFILSAYAIAGPQAYVALFPALRALPIQLLQVLFVV
VSALLIVFAYQELLPSLTFATIAKAVILTALVSLTLARGLTIRQSITHSW
SPSRLVDPFLMGTIALSGVVNLMPVTFQKCVDSLPPDAPATVDAHFIAAY
RGATMLAIAICFVLNIVWCLAVLFVVPQTSPPNVTDVVRAAASQSLPCAS
LEDAYQRGQISTIPLMQVLKCRHDKLDSVISFIVDLFITVSITVSFLVMS
MGMKHYIDGSSKDTTQSDTEYDNSRRTKYVIYFSVVLVTALSNPEGIFRI
MEGVTTLALNIEAGIYILRVLLLAFKLVQAIELLAASILDICILPAPQLV
RSSPPLMWTPEFSIIFRYRSNILGSTL*
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mRNA from alignment at NODE_387_length_27166_cov_4.437230:8411..12001-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8281.t1 ID=Gcaud8281.t1|Name=Gcaud8281.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=3591bp|location=Sequence derived from alignment at NODE_387_length_27166_cov_4.437230:8411..12001- (Gracilaria caudata M_176_S67 male)
ATGCGCCCGACGCTGGGCGCGCTGGTGCAGACCACCGCGCTGTCCGTGGC
CACAGTGCTGGGCACGGGCATTCTCGGGTTGCCTGTATCGCTGCACGCCT
CCGGTCTGGCGCCGTTCGTGCTGCTGTTCTCAGCCAACTTGCTGGCGCAG
CTGGGCGTAGTTGCCGCCACCACCGAGCTTCTTCAGCGCGCGTACTGCGC
GCCGCACGCAGCGGGTTACCAAGCCCTCGAAGTGCACGCGCCCGCGACTT
GTCAGCCGCCGTCGTTACACTCGCTCGCCGAGCGATTCATTCCGTTCGCC
GCCCCGCGCCGGCTGTTTGAGCTGGTAGTGTTGCTGCACTTTCTGTTCAT
TCTGTCTGCGTATGCCATTGCGGGCCCGCAGGCGTACGTTGCGCTCTTTC
CTGCACTGCGCGCCCTGCCGATCCAGCTGTTGCAGGTGCTGTTCGTGGTT
GTATCAGCGCTGCTGATCGTTTTCGCGTACCAGGAGCTGCTACCATCGCT
TACATTCGCCACAATTGCCAAGGCGGTCATACTCACCGCGCTGGTCTCCC
TCACATTGGCACGAGGGCTCACCATACGTCAGTCAATCACACACTCATGG
AGCCCCTCCCGACTCGTTGACCCATTCCTCATGGGCACCATCGCTCTGAG
TGGTGTCGTCAACCTCATGCCTGTCACCTTCCAAAAATGCGTAGATTCAT
TGCCCCCCGACGCACCAGCCACTGTTGATGCACACTTCATTGCCGCCTAC
CGCGGCGCTACTATGTTGGCCATTGCCATCTGTTTTGTCCTCAACATTGT
ATGGTGCTTGGCCGTTCTGTTTGTCGTTCCCCAGACCTCGCCTCCCAACG
TCACCGACGTTGTGCGAGCTGCTGCATCGCAATCTCTTCCATGCGCTTCT
CTTGAAGACGCCTATCAGCGAGGCCAGATTAGTACCATACCTCTGATGCA
GGTCTTGAAGTGTCGCCATGATAAGCTCGACTCCGTAATCTCTTTCATTG
TTGACCTTTTCATCACCGTCAGCATCACTGTTTCGTTCCTTGTAATGTCC
ATGGGAATGAAGCACTACATTGATGGTAGCTCCAAGGACACAACCCAATC
CGACACCGAATACGACAACAGTCGCCGCACTAAATACGTTATTTACTTCT
CGGTTGTGTTGGTTACCGCTCTCTCAAACCCAGAGGGTATTTTCAGGATC
ATGGAAGGTGTTACTACACTAGCGCTTAACATCGAGGCCGGTATTTACAT
TCTGTACATGATGTACCAAAGTCGAAAAGGGGAGGATGTGCCGGCGCCCC
TTTCACGGCTACATGCATACTTGATCTATTCCTTTGTTGGCCTTTATTTC
GTCTTAGTTGTGTCAATAGACGCGTTCTATTACTTGCCTTCAAGCTTGTT
CAAGCGATAGAGCTCTTGGCTGCTTCAATTCTAGATATCTGCATTTTGCC
CGCTCCTCAGCTCGTTCGATCCTCTCCTCCTTTAATGTGGACACCAGAGT
TTTCGATCATCTTCCGTTATCGATCTAATATTTTGGGGTAATGATCGAAA
TTCCGGATCCTGGCTTCGGCACTTCCTCATGCAATTGTCACGTTATGGTT
GAAACCGATACCGTTACATGTCATTTTGAGCACCCCCTGGGAACTTCCCA
GTGGGAAGTCACACCGTGCTTCGCTGTTCTCTCATTACTTCTTACGGCAG
TGGTACAGTAACTGCCACCACAGTATCGGGATCATAATTTGCTGTAACGT
TATTATTAGGTAGTCGAATTATTCGTTATGTAATTTTACTTATTTGCGTA
TTCGTTCAAAATTTGATTCAAAAATTTTCGCAAATGCCAGCATATTCTAA
TCTAAGACAGTTACTGTTGATGCGCATATGTCACATCACCCACAACATGT
TCTGACCTTCATGATCATCATGATGATCATGATCGTGCTCTAAACTAAAA
CTTCCATAACAAGGATCTTGGTAAACGGTACGGTAGTGTCGAGACGTGAT
CGATGCTAGTCTGCGATCGTCTTGGCTTCAGCCTCTGAACTCCTATCGAA
ATGATGATATCCAGCAGGTAACGCAGGAGTGCCTTTCTCTCGACTCACGG
TCACGGTCGCGATGGTTCTTGCAGCACTGTACACCACTTGTGAGCCACGG
GGAAGACAACACCGGACAACAACGATGAGTCATGTTTAATGTTCGGTCCC
GATCATCATCATTACCGCTCGGGTCTCGAGTTATGGAAGGTCTGCACTAG
CGCAGTTTTCACGGCAAGCCCCAAATGACCCAATCTGTAGCTTCGTGGGA
GAACCGTTTGGCTCCAAAGACGCTAGTGAGCACAATGACTCTCTTGTTCC
TGCCCTCCTTCATGGTGACTTGAATAAGAGAAAAGGTCGAAGAAGTTTTG
ATTTCTTCTGGATTGACTACCAGCGCGCCCTGTGCCTGGTAGCCAGACGG
ATCTCATACGAAGGCCAAGGACTAGAGTGATACCTGTACCCCTAGTTGGC
ACACCAATGTCAAAGATGCTTTGCAGACGATCACTCTTTGTTCAGACATA
GCATTTTTCCCACTGGAGACTGCATTTCGTGGCTGACGCTGCGTAACGGA
TCTGGACAGGGGAGGGGACACAGAAGATAAGCTTTGCAAAAGACTCGAAT
CGAGTCTCTTGAATATGGCTTTCATGGTAGATTGGTGCTAGATGTGAAGA
AAAAGCCTTTCGAGGGGACGAGAAATGGTAAGGTGCTGTGCTTGACGCAT
ATGGGTTGCGACGCCGGCGCCATCATAATAAGATATTATCCGCTACGTAA
GATTCTGAGAGCGCTGGCCGGTCGCAGTCCATTGCAGCATACCCTTCTCC
ACCTCTTGATTGTTTCCTGGTTGTGCTACCGCCCTTCCTACACCCCATCC
CTTTGTTTGTTTCAGTAGCATTTCTCAATTCTATGCGCATACTTGCCTAA
CTGCGACGTAGCACAGACCGCTTCTGTTCAAAGAAACACTCTCCTACGAG
GAAAGCCAGAAGAAGAAGACTACATTCGAATAAGCTGACATGCGACGAGA
CGCTGACGATCACGAAGAGAAGAGAAACACAAACGCTTAGATACGGTCCT
CTTCATTCGAGCGCTGACAGGAAAGCTTGGAGCGCAGACTGGCAGATGAT
AGGAACAGTACGAAAGGGCTTTGTAGAGCCAACTGCCTTCTATGCTTTCG
CCACCGCTTTCCCAAATGCGACTCAGGCTAGCGTGCAATCATTAGAGAGA
ACAAGAAATGAGGCACTGCGAGTCAAAACTGGACGTATCTCGTCGACTCA
AATCGAGGCTTTAAGAGAACCGGTCCCTGCGCGCTCTTTGAGCGAGGTCT
CCAGGAACCATGAAGCTACACTGTACGAGAAAGCAGTCCGAAACGCAGTA
CCAACACTCCTCAGAAGCGCTCTGGCTGGTCTAGCGAAACAGAAGGTACG
TAGAAAACGCCAAAAGTTGAGAAGAATAGCTGAAGAATGGCTGGCTAACA
ACGGTATACTACAACTTCCTCGCTCTAACCCCACGCGCAAAACCGGGTTA
CCTCACACTTCACATGTTCAATTTGCTCTAGCACACTGTAA
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Coding sequence (CDS) from alignment at NODE_387_length_27166_cov_4.437230:8411..12001-

>Gcaud8281.t1 ID=Gcaud8281.t1|Name=Gcaud8281.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1434bp|location=Sequence derived from alignment at NODE_387_length_27166_cov_4.437230:8411..12001- (Gracilaria caudata M_176_S67 male)
ATGCGCCCGACGCTGGGCGCGCTGGTGCAGACCACCGCGCTGTCCGTGGC
CACAGTGCTGGGCACGGGCATTCTCGGGTTGCCTGTATCGCTGCACGCCT
CCGGTCTGGCGCCGTTCGTGCTGCTGTTCTCAGCCAACTTGCTGGCGCAG
CTGGGCGTAGTTGCCGCCACCACCGAGCTTCTTCAGCGCGCGTACTGCGC
GCCGCACGCAGCGGGTTACCAAGCCCTCGAAGTGCACGCGCCCGCGACTT
GTCAGCCGCCGTCGTTACACTCGCTCGCCGAGCGATTCATTCCGTTCGCC
GCCCCGCGCCGGCTGTTTGAGCTGGTAGTGTTGCTGCACTTTCTGTTCAT
TCTGTCTGCGTATGCCATTGCGGGCCCGCAGGCGTACGTTGCGCTCTTTC
CTGCACTGCGCGCCCTGCCGATCCAGCTGTTGCAGGTGCTGTTCGTGGTT
GTATCAGCGCTGCTGATCGTTTTCGCGTACCAGGAGCTGCTACCATCGCT
TACATTCGCCACAATTGCCAAGGCGGTCATACTCACCGCGCTGGTCTCCC
TCACATTGGCACGAGGGCTCACCATACGTCAGTCAATCACACACTCATGG
AGCCCCTCCCGACTCGTTGACCCATTCCTCATGGGCACCATCGCTCTGAG
TGGTGTCGTCAACCTCATGCCTGTCACCTTCCAAAAATGCGTAGATTCAT
TGCCCCCCGACGCACCAGCCACTGTTGATGCACACTTCATTGCCGCCTAC
CGCGGCGCTACTATGTTGGCCATTGCCATCTGTTTTGTCCTCAACATTGT
ATGGTGCTTGGCCGTTCTGTTTGTCGTTCCCCAGACCTCGCCTCCCAACG
TCACCGACGTTGTGCGAGCTGCTGCATCGCAATCTCTTCCATGCGCTTCT
CTTGAAGACGCCTATCAGCGAGGCCAGATTAGTACCATACCTCTGATGCA
GGTCTTGAAGTGTCGCCATGATAAGCTCGACTCCGTAATCTCTTTCATTG
TTGACCTTTTCATCACCGTCAGCATCACTGTTTCGTTCCTTGTAATGTCC
ATGGGAATGAAGCACTACATTGATGGTAGCTCCAAGGACACAACCCAATC
CGACACCGAATACGACAACAGTCGCCGCACTAAATACGTTATTTACTTCT
CGGTTGTGTTGGTTACCGCTCTCTCAAACCCAGAGGGTATTTTCAGGATC
ATGGAAGGTGTTACTACACTAGCGCTTAACATCGAGGCCGGTATTTACAT
TCTACGCGTTCTATTACTTGCCTTCAAGCTTGTTCAAGCGATAGAGCTCT
TGGCTGCTTCAATTCTAGATATCTGCATTTTGCCCGCTCCTCAGCTCGTT
CGATCCTCTCCTCCTTTAATGTGGACACCAGAGTTTTCGATCATCTTCCG
TTATCGATCTAATATTTTGGGAAGCACACTGTAA
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