Gcaud827.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud827.t1
Unique NameGcaud827.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length433
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_995_length_15379_cov_4.695120contigNODE_995_length_15379_cov_4.695120:8138..9575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705448.1
Preferred nameFER1L6
PFAMsC2,FerA,FerB,FerI,Ferlin_C
Max annot lvl2759|Eukaryota
KEGG koko:K18261,ko:K19949,ko:K22125,ko:K22126,ko:K22127
GOsGO:0000003,GO:0001505,GO:0001775,GO:0001778,GO:0002064,GO:0002065,GO:0002066,GO:0003002,GO:0003006,GO:0003008,GO:0003012,GO:0003013,GO:0003674,GO:0005488,GO:0005509,GO:0005543,GO:0005544,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005783,GO:0005789,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005887,GO:0005901,GO:0006810,GO:0006836,GO:0006887,GO:0006906,GO:0006928,GO:0006936,GO:0006950,GO:0006996,GO:0007009,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007292,GO:0007304,GO:0007338,GO:0007343,GO:0007389,GO:0007423,GO:0007600,GO:0007605,GO:0008015,GO:0008021,GO:0008150,GO:0008289,GO:0009266,GO:0009408,GO:0009566,GO:0009605,GO:0009611,GO:0009612,GO:0009628,GO:0009653,GO:0009888,GO:0009966,GO:0009987,GO:0010256,GO:0010646,GO:0010996,GO:0012505,GO:0012506,GO:0015630,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016082,GO:0016192,GO:0016323,GO:0017156,GO:0019953,GO:0021700,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023061,GO:0030027,GO:0030030,GO:0030133,GO:0030139,GO:0030154,GO:0030315,GO:0030317,GO:0030381,GO:0030397,GO:0030658,GO:0030659,GO:0030672,GO:0030703,GO:0030707,GO:0030855,GO:0030947,GO:0031090,GO:0031143,GO:0031224,GO:0031226,GO:0031252,GO:0031253,GO:0031260,GO:0031268,GO:0031300,GO:0031301,GO:0031410,GO:0031965,GO:0031967,GO:0031975,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032809,GO:0032940,GO:0033554,GO:0034605,GO:0034622,GO:0035045,GO:0035612,GO:0036477,GO:0040011,GO:0042060,GO:0042175,GO:0042383,GO:0042734,GO:0042995,GO:0043025,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043583,GO:0043933,GO:0044085,GO:0044297,GO:0044298,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044853,GO:0044877,GO:0045055,GO:0045121,GO:0045177,GO:0045178,GO:0045202,GO:0045995,GO:0046872,GO:0046903,GO:0046907,GO:0048232,GO:0048240,GO:0048284,GO:0048468,GO:0048469,GO:0048477,GO:0048489,GO:0048513,GO:0048515,GO:0048583,GO:0048609,GO:0048646,GO:0048731,GO:0048786,GO:0048787,GO:0048839,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050885,GO:0050896,GO:0050905,GO:0050954,GO:0051179,GO:0051234,GO:0051239,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051674,GO:0051704,GO:0051716,GO:0060429,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0065008,GO:0070382,GO:0071840,GO:0071944,GO:0090102,GO:0090174,GO:0090287,GO:0097060,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0097722,GO:0098588,GO:0098589,GO:0098590,GO:0098793,GO:0098805,GO:0098827,GO:0098857,GO:0098916,GO:0099003,GO:0099501,GO:0099503,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0120025,GO:0120036,GO:0120038,GO:0140029,GO:2000026
Evalue4.07e-19
EggNOG OGsKOG1326@1|root,KOG1326@2759|Eukaryota
Descriptionplasma membrane repair
COG categoryS
BRITEko00000,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud827Gcaud827Gracilaria caudata M_176_S67 malegeneNODE_995_length_15379_cov_4.695120 8138..9575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud827.t1Gcaud827.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_995_length_15379_cov_4.695120 8138..9575 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud827.t1.start1Gcaud827.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_995_length_15379_cov_4.695120 8138..8140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud827.t1.CDS1Gcaud827.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_995_length_15379_cov_4.695120 8138..8707 +
Gcaud827.t1.CDS2Gcaud827.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_995_length_15379_cov_4.695120 8847..9575 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud827.t1.exon1Gcaud827.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_995_length_15379_cov_4.695120 8138..8707 +
Gcaud827.t1.exon2Gcaud827.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_995_length_15379_cov_4.695120 8847..9575 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud827.t1.intron1Gcaud827.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_995_length_15379_cov_4.695120 8708..8846 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud827.t1.stop1Gcaud827.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_995_length_15379_cov_4.695120 9573..9575 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud827.t1 ID=Gcaud827.t1|Name=Gcaud827.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=433bp
MHESKNVFEVGFMKKDEQKITEEEKKSKEQNGGGVAEKVSAALAPIRAVK
YKIANILADRMPDIAQALGIEVDEDVSLSSLLNVEDEKIDYDGTKHLKRT
QGSCPVELESDFSEPAYGEFLLSRGDNPLSGNTIGRLQYTENGQRNRAAF
PPILPFDEVRSTRTSVFREKKRAALEGSRPAVGKVKVRLNIGAQCNPYLT
ARFYGRYPGLYTQKHHPIIDDDNLNFFEMFESCVKMPGGSVRLEVKERML
SEAVLPISYPMMTRKEEGNPESGVCNGKLYTEVPVNIGKLGFGWSETIGE
TVIDLDARWYNSAWRSLARTPVQTRSLYSKDSVNLKGQLETFIDIFDAKE
VDRWPKMFRPMPISKPDQETYKMRVVVYKIRDCVLPYRLMKNDPAKLCAF
YVQARLGNRSDDERKMIPASTSQMVLRSLTGG*
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spliced messenger RNA

>Gcaud827.t1 ID=Gcaud827.t1|Name=Gcaud827.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1299bp|location=Sequence derived from alignment at NODE_995_length_15379_cov_4.695120:8138..9575+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGAGAGCAAAAATGTTTTTGAGGTTGGCTTCATGAAGAAGGATGA
GCAGAAGATCACTGAGGAAGAAAAGAAAAGCAAAGAACAAAATGGTGGTG
GCGTTGCTGAGAAGGTATCCGCTGCGCTGGCGCCGATTCGCGCAGTGAAG
TACAAGATTGCTAATATACTTGCAGATAGGATGCCAGATATAGCTCAAGC
GCTCGGAATAGAAGTTGACGAGGATGTTTCACTATCATCGCTTCTAAATG
TTGAGGACGAGAAGATAGACTATGATGGCACAAAGCATTTGAAAAGGACT
CAGGGTTCTTGCCCTGTGGAGCTAGAATCGGATTTCAGCGAACCGGCTTA
TGGTGAGTTCCTCCTTTCCCGTGGTGACAATCCATTGTCGGGCAACACAA
TCGGAAGACTTCAGTACACAGAAAATGGACAACGAAACAGAGCCGCATTT
CCACCTATTCTTCCCTTTGACGAGGTGCGTAGCACTCGGACTTCTGTCTT
CAGGGAAAAGAAGCGAGCAGCATTGGAGGGCTCGCGCCCTGCGGTTGGGA
AGGTTAAGGTCCGTCTCAATATTGGTGCGCAATGCAACCCGTATCTCACC
GCACGGTTTTATGGTCGATATCCTGGCCTCTATACTCAAAAGCACCATCC
CATCATAGACGACGATAACCTGAACTTCTTTGAAATGTTTGAGAGTTGCG
TGAAGATGCCCGGAGGCTCTGTGCGTCTCGAGGTGAAGGAGCGGATGCTT
TCGGAAGCTGTTCTGCCAATAAGCTACCCGATGATGACACGAAAGGAAGA
AGGAAATCCCGAATCGGGTGTGTGCAACGGGAAGTTGTATACAGAAGTGC
CAGTGAACATCGGAAAGTTGGGCTTTGGCTGGTCAGAGACCataggcgaa
actgtcatcgatcttgatgcgcgctggtacaactctgcgtggcgttcact
ggccagaaccccagtgcaaactcgttctttgtactctaaggactctgtga
atctcaaaggccagttggaaaccttcatcgatatatttgatgcgaaagaa
gttgataggtggccgaaaatgtttaggcccatgccgatttcgaagccaga
tcaggagacgtacaaaatgcgagttgtggtctacaagattagggattgcg
tgctgccttatcgactcatgaagaatgacccagccaaactgtgcgctttc
tacgttcaggctcgtctgggcaatcgctcagatgatgaaaggaagatgat
acctgcaagtaCGTCGCAGATGGTGTTACGGAGTTTAACAGGAGGCTGA
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protein sequence of Gcaud827.t1

>Gcaud827.t1 ID=Gcaud827.t1|Name=Gcaud827.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=433bp
MHESKNVFEVGFMKKDEQKITEEEKKSKEQNGGGVAEKVSAALAPIRAVK
YKIANILADRMPDIAQALGIEVDEDVSLSSLLNVEDEKIDYDGTKHLKRT
QGSCPVELESDFSEPAYGEFLLSRGDNPLSGNTIGRLQYTENGQRNRAAF
PPILPFDEVRSTRTSVFREKKRAALEGSRPAVGKVKVRLNIGAQCNPYLT
ARFYGRYPGLYTQKHHPIIDDDNLNFFEMFESCVKMPGGSVRLEVKERML
SEAVLPISYPMMTRKEEGNPESGVCNGKLYTEVPVNIGKLGFGWSETIGE
TVIDLDARWYNSAWRSLARTPVQTRSLYSKDSVNLKGQLETFIDIFDAKE
VDRWPKMFRPMPISKPDQETYKMRVVVYKIRDCVLPYRLMKNDPAKLCAF
YVQARLGNRSDDERKMIPASTSQMVLRSLTGG*
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mRNA from alignment at NODE_995_length_15379_cov_4.695120:8138..9575+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud827.t1 ID=Gcaud827.t1|Name=Gcaud827.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1438bp|location=Sequence derived from alignment at NODE_995_length_15379_cov_4.695120:8138..9575+ (Gracilaria caudata M_176_S67 male)
ATGCACGAGAGCAAAAATGTTTTTGAGGTTGGCTTCATGAAGAAGGATGA
GCAGAAGATCACTGAGGAAGAAAAGAAAAGCAAAGAACAAAATGGTGGTG
GCGTTGCTGAGAAGGTATCCGCTGCGCTGGCGCCGATTCGCGCAGTGAAG
TACAAGATTGCTAATATACTTGCAGATAGGATGCCAGATATAGCTCAAGC
GCTCGGAATAGAAGTTGACGAGGATGTTTCACTATCATCGCTTCTAAATG
TTGAGGACGAGAAGATAGACTATGATGGCACAAAGCATTTGAAAAGGACT
CAGGGTTCTTGCCCTGTGGAGCTAGAATCGGATTTCAGCGAACCGGCTTA
TGGTGAGTTCCTCCTTTCCCGTGGTGACAATCCATTGTCGGGCAACACAA
TCGGAAGACTTCAGTACACAGAAAATGGACAACGAAACAGAGCCGCATTT
CCACCTATTCTTCCCTTTGACGAGGTGCGTAGCACTCGGACTTCTGTCTT
CAGGGAAAAGAAGCGAGCAGCATTGGAGGGCTCGCGCCCTGCGGTTGGGA
AGGTTAAGGTCCGTCTCAATGTCGTTAAGGTCGGGAAAAAGAGACGATGA
TGAAACGAGAAAGGTCCGGCTGACATCCCCTCGCTCATTCGACCGAGACT
TTGTGCCGACGGAAGTGGTTGTTCGTGTGTACGTGCTTCGCGGCATAAAC
GTGCAACAGATTGGTGCGCAATGCAACCCGTATCTCACCGCACGGTTTTA
TGGTCGATATCCTGGCCTCTATACTCAAAAGCACCATCCCATCATAGACG
ACGATAACCTGAACTTCTTTGAAATGTTTGAGAGTTGCGTGAAGATGCCC
GGAGGCTCTGTGCGTCTCGAGGTGAAGGAGCGGATGCTTTCGGAAGCTGT
TCTGCCAATAAGCTACCCGATGATGACACGAAAGGAAGAAGGAAATCCCG
AATCGGGTGTGTGCAACGGGAAGTTGTATACAGAAGTGCCAGTGAACATC
GGAAAGTTGGGCTTTGGCTGGTCAGAGACCataggcgaaactgtcatcga
tcttgatgcgcgctggtacaactctgcgtggcgttcactggccagaaccc
cagtgcaaactcgttctttgtactctaaggactctgtgaatctcaaaggc
cagttggaaaccttcatcgatatatttgatgcgaaagaagttgataggtg
gccgaaaatgtttaggcccatgccgatttcgaagccagatcaggagacgt
acaaaatgcgagttgtggtctacaagattagggattgcgtgctgccttat
cgactcatgaagaatgacccagccaaactgtgcgctttctacgttcaggc
tcgtctgggcaatcgctcagatgatgaaaggaagatgatacctgcaagta
CGTCGCAGATGGTGTTACGGAGTTTAACAGGAGGCTGA
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Coding sequence (CDS) from alignment at NODE_995_length_15379_cov_4.695120:8138..9575+

>Gcaud827.t1 ID=Gcaud827.t1|Name=Gcaud827.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1299bp|location=Sequence derived from alignment at NODE_995_length_15379_cov_4.695120:8138..9575+ (Gracilaria caudata M_176_S67 male)
ATGCACGAGAGCAAAAATGTTTTTGAGGTTGGCTTCATGAAGAAGGATGA
GCAGAAGATCACTGAGGAAGAAAAGAAAAGCAAAGAACAAAATGGTGGTG
GCGTTGCTGAGAAGGTATCCGCTGCGCTGGCGCCGATTCGCGCAGTGAAG
TACAAGATTGCTAATATACTTGCAGATAGGATGCCAGATATAGCTCAAGC
GCTCGGAATAGAAGTTGACGAGGATGTTTCACTATCATCGCTTCTAAATG
TTGAGGACGAGAAGATAGACTATGATGGCACAAAGCATTTGAAAAGGACT
CAGGGTTCTTGCCCTGTGGAGCTAGAATCGGATTTCAGCGAACCGGCTTA
TGGTGAGTTCCTCCTTTCCCGTGGTGACAATCCATTGTCGGGCAACACAA
TCGGAAGACTTCAGTACACAGAAAATGGACAACGAAACAGAGCCGCATTT
CCACCTATTCTTCCCTTTGACGAGGTGCGTAGCACTCGGACTTCTGTCTT
CAGGGAAAAGAAGCGAGCAGCATTGGAGGGCTCGCGCCCTGCGGTTGGGA
AGGTTAAGGTCCGTCTCAATATTGGTGCGCAATGCAACCCGTATCTCACC
GCACGGTTTTATGGTCGATATCCTGGCCTCTATACTCAAAAGCACCATCC
CATCATAGACGACGATAACCTGAACTTCTTTGAAATGTTTGAGAGTTGCG
TGAAGATGCCCGGAGGCTCTGTGCGTCTCGAGGTGAAGGAGCGGATGCTT
TCGGAAGCTGTTCTGCCAATAAGCTACCCGATGATGACACGAAAGGAAGA
AGGAAATCCCGAATCGGGTGTGTGCAACGGGAAGTTGTATACAGAAGTGC
CAGTGAACATCGGAAAGTTGGGCTTTGGCTGGTCAGAGACCataggcgaa
actgtcatcgatcttgatgcgcgctggtacaactctgcgtggcgttcact
ggccagaaccccagtgcaaactcgttctttgtactctaaggactctgtga
atctcaaaggccagttggaaaccttcatcgatatatttgatgcgaaagaa
gttgataggtggccgaaaatgtttaggcccatgccgatttcgaagccaga
tcaggagacgtacaaaatgcgagttgtggtctacaagattagggattgcg
tgctgccttatcgactcatgaagaatgacccagccaaactgtgcgctttc
tacgttcaggctcgtctgggcaatcgctcagatgatgaaaggaagatgat
acctgcaagtaCGTCGCAGATGGTGTTACGGAGTTTAACAGGAGGCTGA
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