Gcaud8269.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8269.t1
Unique Name	Gcaud8269.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	339

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1563_length_9733_cov_3.722049	contig	NODE_1563_length_9733_cov_3.722049:7671..8687 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3880.AES73808
PFAMs	TPT
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K15281
KEGG TC	2.A.7.15
GOs	GO:0003674,GO:0005215,GO:0005338,GO:0005459,GO:0005460,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006810,GO:0006811,GO:0006820,GO:0007275,GO:0008150,GO:0008509,GO:0008514,GO:0009653,GO:0009791,GO:0009888,GO:0009987,GO:0010015,GO:0010053,GO:0010054,GO:0012505,GO:0015075,GO:0015165,GO:0015711,GO:0015780,GO:0015786,GO:0015931,GO:0015932,GO:0021700,GO:0022622,GO:0022857,GO:0030154,GO:0032501,GO:0032502,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048364,GO:0048468,GO:0048469,GO:0048527,GO:0048528,GO:0048731,GO:0048764,GO:0048765,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0055085,GO:0071695,GO:0071702,GO:0071705,GO:0072334,GO:0080147,GO:0090481,GO:0090558,GO:0090627,GO:0090696,GO:0098656,GO:0099402,GO:1901264,GO:1901505,GO:1905392
Evalue	6.39e-48
EggNOG OGs	COG5070@1\|root,KOG1444@2759\|Eukaryota,37M7F@33090\|Viridiplantae,3GCD9@35493\|Streptophyta,4JRQI@91835\|fabids
Description	UDP-sugar transporter
COG category	GOU
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8269	Gcaud8269	Gracilaria caudata M_176_S67 male	gene	NODE_1563_length_9733_cov_3.722049 7671..8687 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8269.t1.start1	Gcaud8269.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1563_length_9733_cov_3.722049 7671..7673 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8269.t1.CDS1	Gcaud8269.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1563_length_9733_cov_3.722049 7671..8687 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8269.t1.exon1	Gcaud8269.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1563_length_9733_cov_3.722049 7671..8687 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8269.t1.stop1	Gcaud8269.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1563_length_9733_cov_3.722049 8685..8687 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8269.t1	Gcaud8269.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1563_length_9733_cov_3.722049 7671..8687 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1563_length_9733_cov_3.722049:7671..8687+
coding sequence from alignment at NODE_1563_length_9733_cov_3.722049:7671..8687+

mRNA sequence

>Gcaud8269.t1 ID=Gcaud8269.t1|Name=Gcaud8269.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=339bp
MTAHTREEDPKSHRIRLLSEKEEKLDDAPSEEQVRRTVIVSLSVCLFYIL
VSSSMVFTNKALSYTYGFRTTNILLFFQMIFTVVLLRFLRTAKLIEFADF
ELSRAKQVAPVSIFYSLNAAVALVALRELSVPSYTLIKRLSPLFTMILEA
LLLKKYATRSTVLALLVMSSGTVLAANADTSSSTFAWTLGFASCAFQASY
LTFVKRSGLDTGMNSFGILYYHSILSIPCITAIAIGVGELGPALVYDKWT
SPSFVVVFVASLFMGLLLNYALFLCTELTSPTSTVVSGQVKAMGQTVIGI
FTFGGVDMNLRYTCGTLLNISGGFMYAYAKLKLLRERG*

spliced messenger RNA

>Gcaud8269.t1 ID=Gcaud8269.t1|Name=Gcaud8269.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at NODE_1563_length_9733_cov_3.722049:7671..8687+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGCTCATACTCGCGAGGAGGACCCCAAATCACATCGAATTCGTCT
TCTCTCCGAGAAGGAAGAAAAGCTCGATGATGCGCCCTCCGAAGAACAGG
TGCGACGCACCGTTATTGTGTCTCTCTCTGTGTGTCTCTTCTACATCTTG
GTCTCTTCGTCAATGGTTTTCACCAACAAGGCACTGAGTTACACCTACGG
TTTTCGCACCACCAACATCTTGCTCTTCTTCCAGATGATTTTCACCGTGG
TGCTTCTTCGTTTCTTACGGACAGCAAAGCTCATCGAATTTGCTGATTTC
GAACTATCGCGAGCAAAGCAGGTAGCCCCTGTATCTATTTTTTACTCGCT
CAATGCTGCCGTCGCACTAGTCGCGCTTCGTGAGCTGTCAGTGCCCAGTT
ACACCCTCATCAAGCGTCTTTCCCCGCTCTTCACCATGATATTGGAAGCA
TTGCTGCTAAAGAAGTACGCCACGCGCTCTACTGTTCTTGCCCTTCTCGT
CATGTCTTCCGGAACAGTTCTAGCCGCCAACGCCGACACCTCCAGTTCTA
CATTCGCATGGACGTTGGGCTTCGCTTCGTGCGCGTTCCAAGCTTCGTAT
CTCACGTTTGTCAAGCGCTCTGGGTTGGACACGGGCATGAATTCTTTTGG
CATCCTCTATTACCACAGCATTTTATCGATTCCTTGTATTACTGCAATCG
CCATCGGAGTCGGAGAGCTTGGCCCCGCACTGGTGTATGACAAATGGACT
TCACCCTCTTTCGTTGTCGTTTTTGTAGCCTCGCTTTTCATGGGCCTTCT
GCTCAATTACGCACTCTTTTTGTGTACTGAGCTCACCTCGCCTACCAGCA
CTGTTGTTTCTGGGCAGGTTAAAGCCATGGGTCAAACTGTAATCGGTATA
TTCACGTTTGGTGGCGTGGATATGAACTTGCGGTATACATGTGGTACCTT
GCTCAATATTTCGGGTGGATTTATGTATGCGTATGCAAAGCTCAAACTCT
TGCGTGAGCGAGGTTGA

protein sequence of Gcaud8269.t1

>Gcaud8269.t1 ID=Gcaud8269.t1|Name=Gcaud8269.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=339bp
MTAHTREEDPKSHRIRLLSEKEEKLDDAPSEEQVRRTVIVSLSVCLFYIL
VSSSMVFTNKALSYTYGFRTTNILLFFQMIFTVVLLRFLRTAKLIEFADF
ELSRAKQVAPVSIFYSLNAAVALVALRELSVPSYTLIKRLSPLFTMILEA
LLLKKYATRSTVLALLVMSSGTVLAANADTSSSTFAWTLGFASCAFQASY
LTFVKRSGLDTGMNSFGILYYHSILSIPCITAIAIGVGELGPALVYDKWT
SPSFVVVFVASLFMGLLLNYALFLCTELTSPTSTVVSGQVKAMGQTVIGI
FTFGGVDMNLRYTCGTLLNISGGFMYAYAKLKLLRERG*

mRNA from alignment at NODE_1563_length_9733_cov_3.722049:7671..8687+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8269.t1 ID=Gcaud8269.t1|Name=Gcaud8269.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at NODE_1563_length_9733_cov_3.722049:7671..8687+ (Gracilaria caudata M_176_S67 male)
ATGACAGCTCATACTCGCGAGGAGGACCCCAAATCACATCGAATTCGTCT
TCTCTCCGAGAAGGAAGAAAAGCTCGATGATGCGCCCTCCGAAGAACAGG
TGCGACGCACCGTTATTGTGTCTCTCTCTGTGTGTCTCTTCTACATCTTG
GTCTCTTCGTCAATGGTTTTCACCAACAAGGCACTGAGTTACACCTACGG
TTTTCGCACCACCAACATCTTGCTCTTCTTCCAGATGATTTTCACCGTGG
TGCTTCTTCGTTTCTTACGGACAGCAAAGCTCATCGAATTTGCTGATTTC
GAACTATCGCGAGCAAAGCAGGTAGCCCCTGTATCTATTTTTTACTCGCT
CAATGCTGCCGTCGCACTAGTCGCGCTTCGTGAGCTGTCAGTGCCCAGTT
ACACCCTCATCAAGCGTCTTTCCCCGCTCTTCACCATGATATTGGAAGCA
TTGCTGCTAAAGAAGTACGCCACGCGCTCTACTGTTCTTGCCCTTCTCGT
CATGTCTTCCGGAACAGTTCTAGCCGCCAACGCCGACACCTCCAGTTCTA
CATTCGCATGGACGTTGGGCTTCGCTTCGTGCGCGTTCCAAGCTTCGTAT
CTCACGTTTGTCAAGCGCTCTGGGTTGGACACGGGCATGAATTCTTTTGG
CATCCTCTATTACCACAGCATTTTATCGATTCCTTGTATTACTGCAATCG
CCATCGGAGTCGGAGAGCTTGGCCCCGCACTGGTGTATGACAAATGGACT
TCACCCTCTTTCGTTGTCGTTTTTGTAGCCTCGCTTTTCATGGGCCTTCT
GCTCAATTACGCACTCTTTTTGTGTACTGAGCTCACCTCGCCTACCAGCA
CTGTTGTTTCTGGGCAGGTTAAAGCCATGGGTCAAACTGTAATCGGTATA
TTCACGTTTGGTGGCGTGGATATGAACTTGCGGTATACATGTGGTACCTT
GCTCAATATTTCGGGTGGATTTATGTATGCGTATGCAAAGCTCAAACTCT
TGCGTGAGCGAGGTTGA

Coding sequence (CDS) from alignment at NODE_1563_length_9733_cov_3.722049:7671..8687+

>Gcaud8269.t1 ID=Gcaud8269.t1|Name=Gcaud8269.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1017bp|location=Sequence derived from alignment at NODE_1563_length_9733_cov_3.722049:7671..8687+ (Gracilaria caudata M_176_S67 male)
ATGACAGCTCATACTCGCGAGGAGGACCCCAAATCACATCGAATTCGTCT
TCTCTCCGAGAAGGAAGAAAAGCTCGATGATGCGCCCTCCGAAGAACAGG
TGCGACGCACCGTTATTGTGTCTCTCTCTGTGTGTCTCTTCTACATCTTG
GTCTCTTCGTCAATGGTTTTCACCAACAAGGCACTGAGTTACACCTACGG
TTTTCGCACCACCAACATCTTGCTCTTCTTCCAGATGATTTTCACCGTGG
TGCTTCTTCGTTTCTTACGGACAGCAAAGCTCATCGAATTTGCTGATTTC
GAACTATCGCGAGCAAAGCAGGTAGCCCCTGTATCTATTTTTTACTCGCT
CAATGCTGCCGTCGCACTAGTCGCGCTTCGTGAGCTGTCAGTGCCCAGTT
ACACCCTCATCAAGCGTCTTTCCCCGCTCTTCACCATGATATTGGAAGCA
TTGCTGCTAAAGAAGTACGCCACGCGCTCTACTGTTCTTGCCCTTCTCGT
CATGTCTTCCGGAACAGTTCTAGCCGCCAACGCCGACACCTCCAGTTCTA
CATTCGCATGGACGTTGGGCTTCGCTTCGTGCGCGTTCCAAGCTTCGTAT
CTCACGTTTGTCAAGCGCTCTGGGTTGGACACGGGCATGAATTCTTTTGG
CATCCTCTATTACCACAGCATTTTATCGATTCCTTGTATTACTGCAATCG
CCATCGGAGTCGGAGAGCTTGGCCCCGCACTGGTGTATGACAAATGGACT
TCACCCTCTTTCGTTGTCGTTTTTGTAGCCTCGCTTTTCATGGGCCTTCT
GCTCAATTACGCACTCTTTTTGTGTACTGAGCTCACCTCGCCTACCAGCA
CTGTTGTTTCTGGGCAGGTTAAAGCCATGGGTCAAACTGTAATCGGTATA
TTCACGTTTGGTGGCGTGGATATGAACTTGCGGTATACATGTGGTACCTT
GCTCAATATTTCGGGTGGATTTATGTATGCGTATGCAAAGCTCAAACTCT
TGCGTGAGCGAGGTTGA