Gcaud8263.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8263.t1
Unique Name	Gcaud8263.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	256

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_926_length_16078_cov_4.480515	contig	NODE_926_length_16078_cov_4.480515:11308..12075 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8263	Gcaud8263	Gracilaria caudata M_176_S67 male	gene	NODE_926_length_16078_cov_4.480515 11308..12075 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8263.t1.stop1	Gcaud8263.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_926_length_16078_cov_4.480515 11308..11310 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8263.t1.CDS1	Gcaud8263.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_926_length_16078_cov_4.480515 11308..12075 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8263.t1.exon1	Gcaud8263.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_926_length_16078_cov_4.480515 11308..12075 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8263.t1.start1	Gcaud8263.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_926_length_16078_cov_4.480515 12073..12075 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8263.t1	Gcaud8263.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_926_length_16078_cov_4.480515 11308..12075 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_926_length_16078_cov_4.480515:11308..12075-
coding sequence from alignment at NODE_926_length_16078_cov_4.480515:11308..12075-

mRNA sequence

>Gcaud8263.t1 ID=Gcaud8263.t1|Name=Gcaud8263.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=256bp
MRNELKRVASDENGHFEVTGTPIFVTNGEPELFLKLEYHRISKVERIRVT
SSEYFDIQTTPGSTRVEMGPLKLRKHRCQAYMVFYEATRNYYERVGKTIP
EKPLVSVDEVTDQPLPYVVYNQVISRKDFEWSFVVAQHEVGHIVRHVLDG
DKSQFLENERLYGDPELRIHSCTSESSEGFAFNEGWAYFWADQCLDSIAS
GSHTILGDVAAALRNLQAVCDSSYAQMVKVLEDNPGVIYSYSGYEEKHTQ
MFGCP*

spliced messenger RNA

>Gcaud8263.t1 ID=Gcaud8263.t1|Name=Gcaud8263.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=768bp|location=Sequence derived from alignment at NODE_926_length_16078_cov_4.480515:11308..12075- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAAACGAACTCAAAAGAGTTGCTTCAGACGAGAACGGGCATTTCGA
AGTCACTGGCACCCCCATCTTTGTTACTAATGGAGAACCAGAATTGTTTC
TCAAGTTGGAATATCATCGCATATCAAAGGTTGAACGAATCCGTGTAACG
TCTTCTGAATATTTCGATATTCAGACCACCCCTGGAAGCACAAGAGTAGA
GATGGGACCTCTGAAACTCAGGAAACACCGTTGTCAGGCATATATGGTGT
TCTATGAAGCCACAAGAAATTACTACGAAAGAGTTGGAAAAACAATCCCG
GAAAAGCCACTGGTTTCGGTCGACGAAGTGACTGACCAGCCACTACCGTA
TGTCGTATATAACCAAGTAATTTCCAGAAAAGACTTTGAATGGAGCTTTG
TTGTAGCTCAACATGAAGTTGGTCACATTGTTCGACATGTTCTCGATGGT
GATAAATCACAATTCCTGGAGAACGAACGTCTATACGGCGATCCGGAGCT
TCGTATCCATAGTTGTACTTCAGAAAGCTCGGAGGGCTTTGCATTTAATG
AAGGGTGGGCGTACTTTTGGGCCGATCAGTGCTTGGACTCCATTGCATCT
GGATCGCACACTATTCTTGGTGATGTTGCTGCGGCTCTTCGTAACCTCCA
AGCCGTATGTGATAGCAGCTACGCACAAATGGTGAAGGTACTGGAAGATA
ACCCTGGTGTGATTTACTCATATTCGGGGTATGAAGAGAAACACACACAA
ATGTTCGGGTGCCCTTGA

protein sequence of Gcaud8263.t1

>Gcaud8263.t1 ID=Gcaud8263.t1|Name=Gcaud8263.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=256bp
MRNELKRVASDENGHFEVTGTPIFVTNGEPELFLKLEYHRISKVERIRVT
SSEYFDIQTTPGSTRVEMGPLKLRKHRCQAYMVFYEATRNYYERVGKTIP
EKPLVSVDEVTDQPLPYVVYNQVISRKDFEWSFVVAQHEVGHIVRHVLDG
DKSQFLENERLYGDPELRIHSCTSESSEGFAFNEGWAYFWADQCLDSIAS
GSHTILGDVAAALRNLQAVCDSSYAQMVKVLEDNPGVIYSYSGYEEKHTQ
MFGCP*

mRNA from alignment at NODE_926_length_16078_cov_4.480515:11308..12075-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8263.t1 ID=Gcaud8263.t1|Name=Gcaud8263.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=768bp|location=Sequence derived from alignment at NODE_926_length_16078_cov_4.480515:11308..12075- (Gracilaria caudata M_176_S67 male)
ATGAGAAACGAACTCAAAAGAGTTGCTTCAGACGAGAACGGGCATTTCGA
AGTCACTGGCACCCCCATCTTTGTTACTAATGGAGAACCAGAATTGTTTC
TCAAGTTGGAATATCATCGCATATCAAAGGTTGAACGAATCCGTGTAACG
TCTTCTGAATATTTCGATATTCAGACCACCCCTGGAAGCACAAGAGTAGA
GATGGGACCTCTGAAACTCAGGAAACACCGTTGTCAGGCATATATGGTGT
TCTATGAAGCCACAAGAAATTACTACGAAAGAGTTGGAAAAACAATCCCG
GAAAAGCCACTGGTTTCGGTCGACGAAGTGACTGACCAGCCACTACCGTA
TGTCGTATATAACCAAGTAATTTCCAGAAAAGACTTTGAATGGAGCTTTG
TTGTAGCTCAACATGAAGTTGGTCACATTGTTCGACATGTTCTCGATGGT
GATAAATCACAATTCCTGGAGAACGAACGTCTATACGGCGATCCGGAGCT
TCGTATCCATAGTTGTACTTCAGAAAGCTCGGAGGGCTTTGCATTTAATG
AAGGGTGGGCGTACTTTTGGGCCGATCAGTGCTTGGACTCCATTGCATCT
GGATCGCACACTATTCTTGGTGATGTTGCTGCGGCTCTTCGTAACCTCCA
AGCCGTATGTGATAGCAGCTACGCACAAATGGTGAAGGTACTGGAAGATA
ACCCTGGTGTGATTTACTCATATTCGGGGTATGAAGAGAAACACACACAA
ATGTTCGGGTGCCCTTGA

Coding sequence (CDS) from alignment at NODE_926_length_16078_cov_4.480515:11308..12075-

>Gcaud8263.t1 ID=Gcaud8263.t1|Name=Gcaud8263.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=768bp|location=Sequence derived from alignment at NODE_926_length_16078_cov_4.480515:11308..12075- (Gracilaria caudata M_176_S67 male)
ATGAGAAACGAACTCAAAAGAGTTGCTTCAGACGAGAACGGGCATTTCGA
AGTCACTGGCACCCCCATCTTTGTTACTAATGGAGAACCAGAATTGTTTC
TCAAGTTGGAATATCATCGCATATCAAAGGTTGAACGAATCCGTGTAACG
TCTTCTGAATATTTCGATATTCAGACCACCCCTGGAAGCACAAGAGTAGA
GATGGGACCTCTGAAACTCAGGAAACACCGTTGTCAGGCATATATGGTGT
TCTATGAAGCCACAAGAAATTACTACGAAAGAGTTGGAAAAACAATCCCG
GAAAAGCCACTGGTTTCGGTCGACGAAGTGACTGACCAGCCACTACCGTA
TGTCGTATATAACCAAGTAATTTCCAGAAAAGACTTTGAATGGAGCTTTG
TTGTAGCTCAACATGAAGTTGGTCACATTGTTCGACATGTTCTCGATGGT
GATAAATCACAATTCCTGGAGAACGAACGTCTATACGGCGATCCGGAGCT
TCGTATCCATAGTTGTACTTCAGAAAGCTCGGAGGGCTTTGCATTTAATG
AAGGGTGGGCGTACTTTTGGGCCGATCAGTGCTTGGACTCCATTGCATCT
GGATCGCACACTATTCTTGGTGATGTTGCTGCGGCTCTTCGTAACCTCCA
AGCCGTATGTGATAGCAGCTACGCACAAATGGTGAAGGTACTGGAAGATA
ACCCTGGTGTGATTTACTCATATTCGGGGTATGAAGAGAAACACACACAA
ATGTTCGGGTGCCCTTGA