Gcaud8261.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8261.t1
Unique NameGcaud8261.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length501
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_926_length_16078_cov_4.480515contigNODE_926_length_16078_cov_4.480515:5444..7130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4006.Lus10026203
PFAMsExo_endo_phos
Max annot lvl35493|Streptophyta
KEGG koko:K12603
KEGG Pathwayko03018,map03018
GOsGO:0000288,GO:0000289,GO:0000956,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005515,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0019222,GO:0019439,GO:0034641,GO:0034655,GO:0042752,GO:0043170,GO:0043621,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901575
Evalue1.07e-24
EggNOG OGsCOG5239@1|root,KOG0620@2759|Eukaryota,37QRI@33090|Viridiplantae,3GFKB@35493|Streptophyta,4JKJ5@91835|fabids
EC3.1.13.4
DescriptionCarbon catabolite repressor protein 4 homolog
COG categoryK
BRITEko00000,ko00001,ko01000,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8261Gcaud8261Gracilaria caudata M_176_S67 malegeneNODE_926_length_16078_cov_4.480515 5444..7130 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8261.t1Gcaud8261.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_926_length_16078_cov_4.480515 5444..7130 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8261.t1.stop1Gcaud8261.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_926_length_16078_cov_4.480515 5444..5446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8261.t1.CDS1Gcaud8261.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_926_length_16078_cov_4.480515 5444..5455 -
Gcaud8261.t1.CDS2Gcaud8261.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_926_length_16078_cov_4.480515 5541..6100 -
Gcaud8261.t1.CDS3Gcaud8261.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_926_length_16078_cov_4.480515 6200..7130 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8261.t1.exon1Gcaud8261.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_926_length_16078_cov_4.480515 5444..5455 -
Gcaud8261.t1.exon2Gcaud8261.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_926_length_16078_cov_4.480515 5541..6100 -
Gcaud8261.t1.exon3Gcaud8261.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_926_length_16078_cov_4.480515 6200..7130 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8261.t1.intron1Gcaud8261.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_926_length_16078_cov_4.480515 5456..5540 -
Gcaud8261.t1.intron2Gcaud8261.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_926_length_16078_cov_4.480515 6101..6199 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8261.t1.start1Gcaud8261.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_926_length_16078_cov_4.480515 7128..7130 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8261.t1 ID=Gcaud8261.t1|Name=Gcaud8261.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=501bp
MPPASKVTVLSWNCLADSYALGTTVGKQRNCYRLVAWTHRWQRISSILRF
YDADIVCLQEVDHYDSHFKPFLTDLNYSVRYVQRPGKEDGVLVAFKTRKF
HLLRKECIYFDDLANVKTLQLPISTRDRLRRQNVALILVLRSNTVIMGSE
MISRQSFSVSTTHLYWNPTAPEIKLAQAIYLIKRISNVHASVEKPPTASI
LTGDFNSLPRSQTYRRILRGAPFRESACASNARASHEACQHLVVRYRDGE
RIKFLCDSTLTRMMRWLRLLGVDVVLEGKYSQERRSKYNDFSVLFEQARM
ERRVIVTTSTVKLNKSDILSICGKCGGRIDTCDVADPRLEGKPIPRDRQL
YVCIKCYQPYWNGDSESAVSARALRQAQTLFAYVEADRKTNMKLLGDDQR
FGVHRKQFSSSIRLWGEPPKDERLKGNAAITTATDSSIMSLRLPGNDQQC
SSNWLRYSSAFEEVHKQEPMYTNVNGTFRGTLDYIFVGGSCTVSDSEISS
*
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spliced messenger RNA

>Gcaud8261.t1 ID=Gcaud8261.t1|Name=Gcaud8261.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at NODE_926_length_16078_cov_4.480515:5444..7130- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCGGCGTCCAAAGTGACTGTTTTGTCTTGGAACTGTCTTGCAGA
TTCTTACGCACTCGGAACGACTGTGGGAAAGCAAAGAAATTGCTATCGCC
TTGTGGCATGGACTCATCGCTGGCAGAGAATATCATCCATCTTACGCTTT
TATGATGCTGATATCGTGTGCCTACAAGAAGTAGACCATTATGATAGCCA
TTTTAAACCGTTCCTTACTGATTTGAACTACTCGGTGCGCTATGTTCAGC
GACCTGGTAAAGAAGATGGTGTACTCGTGGCGTTCAAGACTCGGAAGTTT
CATCTTCTTCGCAAAGAATGTATTTACTTCGATGACCTTGCCAATGTGAA
AACTCTACAGCTTCCCATTTCAACCAGGGATAGGCTAAGGAGGCAAAATG
TAGCTTTAATACTAGTGCTGAGATCGAACACGGTCATAATGGGAAGCGAA
ATGATTTCAAGGCAATCGTTTTCGGTGTCAACTACACATTTGTACTGGAA
TCCCACTGCGCCAGAAATTAAGCTAGCGCAGGCTATCTACCTTATCAAGC
GAATCAGCAATGTGCATGCGAGCGTTGAGAAGCCGCCCACGGCTTCAATT
TTGACGGGCGACTTCAACAGCCTGCCGAGAAGCCAGACATACAGGCGAAT
TTTGCGTGGAGCTCCTTTTCGCGAGTCTGCTTGTGCGTCAAACGCCCGCG
CATCTCATGAGGCGTGCCAGCATTTGGTCGTGAGGTATAGAGACGGTGAG
CGTATTAAGTTCTTGTGTGATTCAACTCTTACAAGGATGATGAGATGGTT
ACGTCTTCTCGGTGTTGATGTTGTGCTTGAAGGTAAGTACTCCCAAGAAA
GGAGGTCTAAATACAATGACTTCTCTGTTCTTTTTGAGCAAGCCCGCATG
GAGAGACGCGTAATTGTAACCACAAGCACAGTGAAACTCAACAAGTCAGA
CATTCTCAGCATATGCGGAAAGTGCGGTGGCAGAATAGACACCTGTGACG
TTGCGGATCCCAGACTTGAGGGGAAACCCATTCCACGCGATAGACAGCTC
TACGTTTGCATCAAGTGTTATCAACCTTACTGGAATGGAGACTCTGAAAG
CGCAGTGTCCGCTCGAGCACTTCGCCAAGCTCAGACATTGTTTGCATACG
TTGAAGCTGATAGAAAGACGAACATGAAGCTTCTTGGCGACGATCAGCGT
TTTGGTGTGCATCGGAAACAATTCTCGTCGTCTATCCGACTATGGGGCGA
GCCTCCTAAAGATGAGCGCCTGAAAGGCAATGCTGCAATAACTACGGCAA
CAGATTCCTCAATAATGTCCTTGCGTTTGCCAGGTAACGACCAGCAATGC
AGCAGTAATTGGTTGCGCTACTCTTCTGCGTTTGAAGAAGTCCACAAGCA
AGAGCCGATGTATACGAACGTCAATGGAACTTTTCGAGGAACTCTGGACT
ACATTTTCGTTGGAGGTTCATGCACCGTTTCAGACAGTGAAATATCATCC
TGA
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protein sequence of Gcaud8261.t1

>Gcaud8261.t1 ID=Gcaud8261.t1|Name=Gcaud8261.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=501bp
MPPASKVTVLSWNCLADSYALGTTVGKQRNCYRLVAWTHRWQRISSILRF
YDADIVCLQEVDHYDSHFKPFLTDLNYSVRYVQRPGKEDGVLVAFKTRKF
HLLRKECIYFDDLANVKTLQLPISTRDRLRRQNVALILVLRSNTVIMGSE
MISRQSFSVSTTHLYWNPTAPEIKLAQAIYLIKRISNVHASVEKPPTASI
LTGDFNSLPRSQTYRRILRGAPFRESACASNARASHEACQHLVVRYRDGE
RIKFLCDSTLTRMMRWLRLLGVDVVLEGKYSQERRSKYNDFSVLFEQARM
ERRVIVTTSTVKLNKSDILSICGKCGGRIDTCDVADPRLEGKPIPRDRQL
YVCIKCYQPYWNGDSESAVSARALRQAQTLFAYVEADRKTNMKLLGDDQR
FGVHRKQFSSSIRLWGEPPKDERLKGNAAITTATDSSIMSLRLPGNDQQC
SSNWLRYSSAFEEVHKQEPMYTNVNGTFRGTLDYIFVGGSCTVSDSEISS
*
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mRNA from alignment at NODE_926_length_16078_cov_4.480515:5444..7130-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8261.t1 ID=Gcaud8261.t1|Name=Gcaud8261.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1687bp|location=Sequence derived from alignment at NODE_926_length_16078_cov_4.480515:5444..7130- (Gracilaria caudata M_176_S67 male)
ATGCCTCCGGCGTCCAAAGTGACTGTTTTGTCTTGGAACTGTCTTGCAGA
TTCTTACGCACTCGGAACGACTGTGGGAAAGCAAAGAAATTGCTATCGCC
TTGTGGCATGGACTCATCGCTGGCAGAGAATATCATCCATCTTACGCTTT
TATGATGCTGATATCGTGTGCCTACAAGAAGTAGACCATTATGATAGCCA
TTTTAAACCGTTCCTTACTGATTTGAACTACTCGGTGCGCTATGTTCAGC
GACCTGGTAAAGAAGATGGTGTACTCGTGGCGTTCAAGACTCGGAAGTTT
CATCTTCTTCGCAAAGAATGTATTTACTTCGATGACCTTGCCAATGTGAA
AACTCTACAGCTTCCCATTTCAACCAGGGATAGGCTAAGGAGGCAAAATG
TAGCTTTAATACTAGTGCTGAGATCGAACACGGTCATAATGGGAAGCGAA
ATGATTTCAAGGCAATCGTTTTCGGTGTCAACTACACATTTGTACTGGAA
TCCCACTGCGCCAGAAATTAAGCTAGCGCAGGCTATCTACCTTATCAAGC
GAATCAGCAATGTGCATGCGAGCGTTGAGAAGCCGCCCACGGCTTCAATT
TTGACGGGCGACTTCAACAGCCTGCCGAGAAGCCAGACATACAGGCGAAT
TTTGCGTGGAGCTCCTTTTCGCGAGTCTGCTTGTGCGTCAAACGCCCGCG
CATCTCATGAGGCGTGCCAGCATTTGGTCGTGAGGTATAGAGACGGTGAG
CGTATTAAGTTCTTGTGTGATTCAACTCTTACAAGGATGATGAGATGGTT
ACGTCTTCTCGGTGTTGATGTTGTGCTTGAAGGTAAGTACTCCCAAGAAA
GGAGGTCTAAATACAATGACTTCTCTGTTCTTTTTGAGCAAGCCCGCATG
GAGAGACGCGTAATTGTAACCACAAGCACAGGTATGTTGCGCAGGTCTAG
ATGTCCTGAGATTTTTATTGTAAACCCTTCAGCTGGAAGTTTGGAAAGTC
AAGTTTCAAGTCTGCTAAATTTCTATGAAGTGAAACTCAACAAGTCAGAC
ATTCTCAGCATATGCGGAAAGTGCGGTGGCAGAATAGACACCTGTGACGT
TGCGGATCCCAGACTTGAGGGGAAACCCATTCCACGCGATAGACAGCTCT
ACGTTTGCATCAAGTGTTATCAACCTTACTGGAATGGAGACTCTGAAAGC
GCAGTGTCCGCTCGAGCACTTCGCCAAGCTCAGACATTGTTTGCATACGT
TGAAGCTGATAGAAAGACGAACATGAAGCTTCTTGGCGACGATCAGCGTT
TTGGTGTGCATCGGAAACAATTCTCGTCGTCTATCCGACTATGGGGCGAG
CCTCCTAAAGATGAGCGCCTGAAAGGCAATGCTGCAATAACTACGGCAAC
AGATTCCTCAATAATGTCCTTGCGTTTGCCAGGTAACGACCAGCAATGCA
GCAGTAATTGGTTGCGCTACTCTTCTGCGTTTGAAGAAGTCCACAAGCAA
GAGCCGATGTATACGAACGTCAATGGAACTTTTCGAGGAACTCTGGACTA
CATTTTCGTTGGAGGTTCATGCACCGTTTCAGACAGTGAAGTGGTTGAAG
CATTCTCGCGCAAGAAAGAGAAGCGAACTTTTCCAAACAGGGACTGGCCA
AGTGATCATATGCTAATTTGTGCAGATATCATCCTGA
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Coding sequence (CDS) from alignment at NODE_926_length_16078_cov_4.480515:5444..7130-

>Gcaud8261.t1 ID=Gcaud8261.t1|Name=Gcaud8261.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1503bp|location=Sequence derived from alignment at NODE_926_length_16078_cov_4.480515:5444..7130- (Gracilaria caudata M_176_S67 male)
ATGCCTCCGGCGTCCAAAGTGACTGTTTTGTCTTGGAACTGTCTTGCAGA
TTCTTACGCACTCGGAACGACTGTGGGAAAGCAAAGAAATTGCTATCGCC
TTGTGGCATGGACTCATCGCTGGCAGAGAATATCATCCATCTTACGCTTT
TATGATGCTGATATCGTGTGCCTACAAGAAGTAGACCATTATGATAGCCA
TTTTAAACCGTTCCTTACTGATTTGAACTACTCGGTGCGCTATGTTCAGC
GACCTGGTAAAGAAGATGGTGTACTCGTGGCGTTCAAGACTCGGAAGTTT
CATCTTCTTCGCAAAGAATGTATTTACTTCGATGACCTTGCCAATGTGAA
AACTCTACAGCTTCCCATTTCAACCAGGGATAGGCTAAGGAGGCAAAATG
TAGCTTTAATACTAGTGCTGAGATCGAACACGGTCATAATGGGAAGCGAA
ATGATTTCAAGGCAATCGTTTTCGGTGTCAACTACACATTTGTACTGGAA
TCCCACTGCGCCAGAAATTAAGCTAGCGCAGGCTATCTACCTTATCAAGC
GAATCAGCAATGTGCATGCGAGCGTTGAGAAGCCGCCCACGGCTTCAATT
TTGACGGGCGACTTCAACAGCCTGCCGAGAAGCCAGACATACAGGCGAAT
TTTGCGTGGAGCTCCTTTTCGCGAGTCTGCTTGTGCGTCAAACGCCCGCG
CATCTCATGAGGCGTGCCAGCATTTGGTCGTGAGGTATAGAGACGGTGAG
CGTATTAAGTTCTTGTGTGATTCAACTCTTACAAGGATGATGAGATGGTT
ACGTCTTCTCGGTGTTGATGTTGTGCTTGAAGGTAAGTACTCCCAAGAAA
GGAGGTCTAAATACAATGACTTCTCTGTTCTTTTTGAGCAAGCCCGCATG
GAGAGACGCGTAATTGTAACCACAAGCACAGTGAAACTCAACAAGTCAGA
CATTCTCAGCATATGCGGAAAGTGCGGTGGCAGAATAGACACCTGTGACG
TTGCGGATCCCAGACTTGAGGGGAAACCCATTCCACGCGATAGACAGCTC
TACGTTTGCATCAAGTGTTATCAACCTTACTGGAATGGAGACTCTGAAAG
CGCAGTGTCCGCTCGAGCACTTCGCCAAGCTCAGACATTGTTTGCATACG
TTGAAGCTGATAGAAAGACGAACATGAAGCTTCTTGGCGACGATCAGCGT
TTTGGTGTGCATCGGAAACAATTCTCGTCGTCTATCCGACTATGGGGCGA
GCCTCCTAAAGATGAGCGCCTGAAAGGCAATGCTGCAATAACTACGGCAA
CAGATTCCTCAATAATGTCCTTGCGTTTGCCAGGTAACGACCAGCAATGC
AGCAGTAATTGGTTGCGCTACTCTTCTGCGTTTGAAGAAGTCCACAAGCA
AGAGCCGATGTATACGAACGTCAATGGAACTTTTCGAGGAACTCTGGACT
ACATTTTCGTTGGAGGTTCATGCACCGTTTCAGACAGTGAAATATCATCC
TGA
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