Gcaud8256.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8256.t1
Unique NameGcaud8256.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length169
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1520_length_9983_cov_4.292357contigNODE_1520_length_9983_cov_4.292357:1407..1913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1246448.ANAZ01000007_gene2161
PFAMsDUF1963
Max annot lvl201174|Actinobacteria
Evalue9.07e-22
EggNOG OGsCOG3878@1|root,COG3878@2|Bacteria,2GNAB@201174|Actinobacteria,4EJUV@85012|Streptosporangiales
DescriptionProtein conserved in bacteria
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8256Gcaud8256Gracilaria caudata M_176_S67 malegeneNODE_1520_length_9983_cov_4.292357 1407..1913 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8256.t1.start1Gcaud8256.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1520_length_9983_cov_4.292357 1407..1409 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8256.t1.CDS1Gcaud8256.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1520_length_9983_cov_4.292357 1407..1913 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8256.t1.exon1Gcaud8256.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1520_length_9983_cov_4.292357 1407..1913 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8256.t1.stop1Gcaud8256.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1520_length_9983_cov_4.292357 1911..1913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8256.t1Gcaud8256.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1520_length_9983_cov_4.292357 1407..1913 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8256.t1 ID=Gcaud8256.t1|Name=Gcaud8256.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=169bp
MDEGEGCIPHECELHFEQVQEYPSSFELQMSLSEKQLNDIDAFVAQHGQE
DLNAVDGGMDEGYHCLFDPSPGSKIGGHVSWIQDPESASCAKCRADMRHL
LTISSLEVGDPGTRWKAIVDENGTSVNTDSEMREQLETGLCIGDVGSVYV
MECRRCEHRPIRTIFQCS*
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spliced messenger RNA

>Gcaud8256.t1 ID=Gcaud8256.t1|Name=Gcaud8256.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=507bp|location=Sequence derived from alignment at NODE_1520_length_9983_cov_4.292357:1407..1913+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGAGGGTGAAGGATGTATCCCACATGAATGCGAACTACATTTTGA
ACAGGTGCAAGAATATCCGTCTTCATTTGAGTTGCAGATGAGTTTGAGCG
AAAAGCAGCTAAACGACATCGATGCTTTTGTGGCACAACACGGACAGGAG
GATTTGAATGCCGTAGATGGTGGTATGGATGAGGGGTACCATTGTCTATT
TGACCCGTCCCCTGGCAGCAAGATTGGAGGTCATGTGAGTTGGATACAGG
ATCCAGAAAGTGCTAGCTGTGCCAAATGTCGCGCAGATATGCGTCACTTA
CTGACCATTTCCAGCTTGGAGGTGGGAGACCCCGGCACGCGATGGAAGGC
TATAGTCGATGAAAACGGAACTTCGGTCAACACGGACAGTGAAATGCGGG
AACAACTTGAGACGGGATTATGCATCGGTGACGTGGGTAGCGTCTACGTA
ATGGAGTGTCGTAGGTGTGAGCATAGACCGATTAGGACCATCTTTCAGTG
CTCTTGA
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protein sequence of Gcaud8256.t1

>Gcaud8256.t1 ID=Gcaud8256.t1|Name=Gcaud8256.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=169bp
MDEGEGCIPHECELHFEQVQEYPSSFELQMSLSEKQLNDIDAFVAQHGQE
DLNAVDGGMDEGYHCLFDPSPGSKIGGHVSWIQDPESASCAKCRADMRHL
LTISSLEVGDPGTRWKAIVDENGTSVNTDSEMREQLETGLCIGDVGSVYV
MECRRCEHRPIRTIFQCS*
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mRNA from alignment at NODE_1520_length_9983_cov_4.292357:1407..1913+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8256.t1 ID=Gcaud8256.t1|Name=Gcaud8256.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=507bp|location=Sequence derived from alignment at NODE_1520_length_9983_cov_4.292357:1407..1913+ (Gracilaria caudata M_176_S67 male)
ATGGACGAGGGTGAAGGATGTATCCCACATGAATGCGAACTACATTTTGA
ACAGGTGCAAGAATATCCGTCTTCATTTGAGTTGCAGATGAGTTTGAGCG
AAAAGCAGCTAAACGACATCGATGCTTTTGTGGCACAACACGGACAGGAG
GATTTGAATGCCGTAGATGGTGGTATGGATGAGGGGTACCATTGTCTATT
TGACCCGTCCCCTGGCAGCAAGATTGGAGGTCATGTGAGTTGGATACAGG
ATCCAGAAAGTGCTAGCTGTGCCAAATGTCGCGCAGATATGCGTCACTTA
CTGACCATTTCCAGCTTGGAGGTGGGAGACCCCGGCACGCGATGGAAGGC
TATAGTCGATGAAAACGGAACTTCGGTCAACACGGACAGTGAAATGCGGG
AACAACTTGAGACGGGATTATGCATCGGTGACGTGGGTAGCGTCTACGTA
ATGGAGTGTCGTAGGTGTGAGCATAGACCGATTAGGACCATCTTTCAGTG
CTCTTGA
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Coding sequence (CDS) from alignment at NODE_1520_length_9983_cov_4.292357:1407..1913+

>Gcaud8256.t1 ID=Gcaud8256.t1|Name=Gcaud8256.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=507bp|location=Sequence derived from alignment at NODE_1520_length_9983_cov_4.292357:1407..1913+ (Gracilaria caudata M_176_S67 male)
ATGGACGAGGGTGAAGGATGTATCCCACATGAATGCGAACTACATTTTGA
ACAGGTGCAAGAATATCCGTCTTCATTTGAGTTGCAGATGAGTTTGAGCG
AAAAGCAGCTAAACGACATCGATGCTTTTGTGGCACAACACGGACAGGAG
GATTTGAATGCCGTAGATGGTGGTATGGATGAGGGGTACCATTGTCTATT
TGACCCGTCCCCTGGCAGCAAGATTGGAGGTCATGTGAGTTGGATACAGG
ATCCAGAAAGTGCTAGCTGTGCCAAATGTCGCGCAGATATGCGTCACTTA
CTGACCATTTCCAGCTTGGAGGTGGGAGACCCCGGCACGCGATGGAAGGC
TATAGTCGATGAAAACGGAACTTCGGTCAACACGGACAGTGAAATGCGGG
AACAACTTGAGACGGGATTATGCATCGGTGACGTGGGTAGCGTCTACGTA
ATGGAGTGTCGTAGGTGTGAGCATAGACCGATTAGGACCATCTTTCAGTG
CTCTTGA
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