Gcaud8255.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8255.t1
Unique NameGcaud8255.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length339
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1514_length_10049_cov_4.962442contigNODE_1514_length_10049_cov_4.962442:7322..8338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog554065.XP_005850934.1
Max annot lvl3041|Chlorophyta
Evalue0.000153
EggNOG OGs2EZ9K@1|root,2T0MM@2759|Eukaryota,382NA@33090|Viridiplantae,34NDG@3041|Chlorophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8255Gcaud8255Gracilaria caudata M_176_S67 malegeneNODE_1514_length_10049_cov_4.962442 7322..8338 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8255.t1.stop1Gcaud8255.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1514_length_10049_cov_4.962442 7322..7324 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8255.t1.CDS1Gcaud8255.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1514_length_10049_cov_4.962442 7322..8338 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8255.t1.exon1Gcaud8255.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1514_length_10049_cov_4.962442 7322..8338 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8255.t1.start1Gcaud8255.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1514_length_10049_cov_4.962442 8336..8338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8255.t1Gcaud8255.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1514_length_10049_cov_4.962442 7322..8338 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8255.t1 ID=Gcaud8255.t1|Name=Gcaud8255.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=339bp
MASPPLRHNGATFKFRRYRDVCDRDEVREICTKVDDYKDYVPRLLPAYAS
GIQCEPYVLEGPTGVAAFILVRPKEVFLNHDVLFQREFFIGAVRVREDLR
GVGLATTILLEATKAVRKAHNELSDLRIFSTTIPENKAMIRIFHKAGWTP
VSNMIIWPRKDEIRSIKSTGKSMLESLDLVHKISSESIALASKWRRITES
DDISALVTQLGRNGSEFLRPEYFSAEGLQCASHFLTNGLSRREHRSAWRL
HCNQHLVGLLFVRPQVLEPASNEPPNIVSACVDDVCVAESAVVFAGNLLK
QESFHVCFDAGITAEKMGSSPLFSSVKAAPFIVYEHRH*
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spliced messenger RNA

>Gcaud8255.t1 ID=Gcaud8255.t1|Name=Gcaud8255.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at NODE_1514_length_10049_cov_4.962442:7322..8338- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCACCTCCCCTGCGACACAACGGTGCGACTTTCAAATTCCGCCG
TTATCGGGATGTATGCGATCGGGACGAAGTGAGAGAAATTTGTACCAAAG
TCGACGATTACAAAGATTACGTGCCTCGTCTACTACCTGCTTATGCTTCC
GGTATTCAATGTGAGCCCTATGTCTTAGAAGGTCCAACTGGAGTAGCTGC
CTTTATCCTTGTGAGACCTAAAGAAGTTTTCCTCAATCACGATGTTCTTT
TCCAAAGAGAGTTCTTTATCGGAGCAGTGCGAGTGCGAGAAGATCTACGT
GGGGTTGGGTTGGCTACCACTATCTTGCTGGAAGCAACAAAAGCAGTTCG
GAAAGCGCACAACGAACTGTCTGACTTGCGCATTTTCTCCACCACAATCC
CTGAAAACAAGGCCATGATCCGGATATTCCATAAGGCGGGATGGACGCCT
GTGAGCAACATGATCATCTGGCCAAGGAAGGACGAAATTCGCTCCATCAA
GAGTACAGGAAAATCAATGCTAGAATCTCTTGACTTGGTTCACAAGATTT
CATCAGAATCCATTGCCCTGGCTTCAAAATGGCGAAGGATTACGGAATCG
GATGATATCTCTGCGCTTGTAACGCAACTAGGGCGCAATGGCTCGGAATT
CTTGCGGCCGGAATATTTTTCTGCTGAAGGTCTGCAATGCGCCTCTCATT
TCTTGACGAATGGGCTTTCAAGACGTGAGCATCGATCAGCGTGGCGACTT
CACTGCAATCAGCACCTCGTAGGGTTGCTGTTTGTAAGACCTCAAGTGCT
TGAACCGGCCTCGAATGAACCTCCAAACATCGTTTCTGCGTGTGTTGATG
ATGTTTGTGTGGCAGAGAGTGCCGTGGTATTTGCCGGAAATCTGCTGAAG
CAAGAAAGCTTCCACGTCTGTTTCGATGCCGGTATAACTGCTGAGAAGAT
GGGAAGCTCTCCATTATTTTCCAGTGTGAAAGCTGCCCCCTTCATCGTAT
ACGAGCATCGGCACTGA
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protein sequence of Gcaud8255.t1

>Gcaud8255.t1 ID=Gcaud8255.t1|Name=Gcaud8255.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=339bp
MASPPLRHNGATFKFRRYRDVCDRDEVREICTKVDDYKDYVPRLLPAYAS
GIQCEPYVLEGPTGVAAFILVRPKEVFLNHDVLFQREFFIGAVRVREDLR
GVGLATTILLEATKAVRKAHNELSDLRIFSTTIPENKAMIRIFHKAGWTP
VSNMIIWPRKDEIRSIKSTGKSMLESLDLVHKISSESIALASKWRRITES
DDISALVTQLGRNGSEFLRPEYFSAEGLQCASHFLTNGLSRREHRSAWRL
HCNQHLVGLLFVRPQVLEPASNEPPNIVSACVDDVCVAESAVVFAGNLLK
QESFHVCFDAGITAEKMGSSPLFSSVKAAPFIVYEHRH*
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mRNA from alignment at NODE_1514_length_10049_cov_4.962442:7322..8338-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8255.t1 ID=Gcaud8255.t1|Name=Gcaud8255.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at NODE_1514_length_10049_cov_4.962442:7322..8338- (Gracilaria caudata M_176_S67 male)
ATGGCTTCACCTCCCCTGCGACACAACGGTGCGACTTTCAAATTCCGCCG
TTATCGGGATGTATGCGATCGGGACGAAGTGAGAGAAATTTGTACCAAAG
TCGACGATTACAAAGATTACGTGCCTCGTCTACTACCTGCTTATGCTTCC
GGTATTCAATGTGAGCCCTATGTCTTAGAAGGTCCAACTGGAGTAGCTGC
CTTTATCCTTGTGAGACCTAAAGAAGTTTTCCTCAATCACGATGTTCTTT
TCCAAAGAGAGTTCTTTATCGGAGCAGTGCGAGTGCGAGAAGATCTACGT
GGGGTTGGGTTGGCTACCACTATCTTGCTGGAAGCAACAAAAGCAGTTCG
GAAAGCGCACAACGAACTGTCTGACTTGCGCATTTTCTCCACCACAATCC
CTGAAAACAAGGCCATGATCCGGATATTCCATAAGGCGGGATGGACGCCT
GTGAGCAACATGATCATCTGGCCAAGGAAGGACGAAATTCGCTCCATCAA
GAGTACAGGAAAATCAATGCTAGAATCTCTTGACTTGGTTCACAAGATTT
CATCAGAATCCATTGCCCTGGCTTCAAAATGGCGAAGGATTACGGAATCG
GATGATATCTCTGCGCTTGTAACGCAACTAGGGCGCAATGGCTCGGAATT
CTTGCGGCCGGAATATTTTTCTGCTGAAGGTCTGCAATGCGCCTCTCATT
TCTTGACGAATGGGCTTTCAAGACGTGAGCATCGATCAGCGTGGCGACTT
CACTGCAATCAGCACCTCGTAGGGTTGCTGTTTGTAAGACCTCAAGTGCT
TGAACCGGCCTCGAATGAACCTCCAAACATCGTTTCTGCGTGTGTTGATG
ATGTTTGTGTGGCAGAGAGTGCCGTGGTATTTGCCGGAAATCTGCTGAAG
CAAGAAAGCTTCCACGTCTGTTTCGATGCCGGTATAACTGCTGAGAAGAT
GGGAAGCTCTCCATTATTTTCCAGTGTGAAAGCTGCCCCCTTCATCGTAT
ACGAGCATCGGCACTGA
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Coding sequence (CDS) from alignment at NODE_1514_length_10049_cov_4.962442:7322..8338-

>Gcaud8255.t1 ID=Gcaud8255.t1|Name=Gcaud8255.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1017bp|location=Sequence derived from alignment at NODE_1514_length_10049_cov_4.962442:7322..8338- (Gracilaria caudata M_176_S67 male)
ATGGCTTCACCTCCCCTGCGACACAACGGTGCGACTTTCAAATTCCGCCG
TTATCGGGATGTATGCGATCGGGACGAAGTGAGAGAAATTTGTACCAAAG
TCGACGATTACAAAGATTACGTGCCTCGTCTACTACCTGCTTATGCTTCC
GGTATTCAATGTGAGCCCTATGTCTTAGAAGGTCCAACTGGAGTAGCTGC
CTTTATCCTTGTGAGACCTAAAGAAGTTTTCCTCAATCACGATGTTCTTT
TCCAAAGAGAGTTCTTTATCGGAGCAGTGCGAGTGCGAGAAGATCTACGT
GGGGTTGGGTTGGCTACCACTATCTTGCTGGAAGCAACAAAAGCAGTTCG
GAAAGCGCACAACGAACTGTCTGACTTGCGCATTTTCTCCACCACAATCC
CTGAAAACAAGGCCATGATCCGGATATTCCATAAGGCGGGATGGACGCCT
GTGAGCAACATGATCATCTGGCCAAGGAAGGACGAAATTCGCTCCATCAA
GAGTACAGGAAAATCAATGCTAGAATCTCTTGACTTGGTTCACAAGATTT
CATCAGAATCCATTGCCCTGGCTTCAAAATGGCGAAGGATTACGGAATCG
GATGATATCTCTGCGCTTGTAACGCAACTAGGGCGCAATGGCTCGGAATT
CTTGCGGCCGGAATATTTTTCTGCTGAAGGTCTGCAATGCGCCTCTCATT
TCTTGACGAATGGGCTTTCAAGACGTGAGCATCGATCAGCGTGGCGACTT
CACTGCAATCAGCACCTCGTAGGGTTGCTGTTTGTAAGACCTCAAGTGCT
TGAACCGGCCTCGAATGAACCTCCAAACATCGTTTCTGCGTGTGTTGATG
ATGTTTGTGTGGCAGAGAGTGCCGTGGTATTTGCCGGAAATCTGCTGAAG
CAAGAAAGCTTCCACGTCTGTTTCGATGCCGGTATAACTGCTGAGAAGAT
GGGAAGCTCTCCATTATTTTCCAGTGTGAAAGCTGCCCCCTTCATCGTAT
ACGAGCATCGGCACTGA
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