Gcaud8253.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8253.t1
Unique Name	Gcaud8253.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	425

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1514_length_10049_cov_4.962442	contig	NODE_1514_length_10049_cov_4.962442:3533..4807 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8253	Gcaud8253	Gracilaria caudata M_176_S67 male	gene	NODE_1514_length_10049_cov_4.962442 3533..4807 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8253.t1.start1	Gcaud8253.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1514_length_10049_cov_4.962442 3533..3535 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8253.t1.CDS1	Gcaud8253.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1514_length_10049_cov_4.962442 3533..4807 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8253.t1.exon1	Gcaud8253.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1514_length_10049_cov_4.962442 3533..4807 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8253.t1.stop1	Gcaud8253.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1514_length_10049_cov_4.962442 4805..4807 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8253.t1	Gcaud8253.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1514_length_10049_cov_4.962442 3533..4807 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1514_length_10049_cov_4.962442:3533..4807+
coding sequence from alignment at NODE_1514_length_10049_cov_4.962442:3533..4807+

mRNA sequence

>Gcaud8253.t1 ID=Gcaud8253.t1|Name=Gcaud8253.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=425bp
MGYVKLLFLVLTFNHVFAQTFCTSTIDLETFLTRSFRANVDLIRLGVPSE
IVKRYYDKAVMDMTLTCNCSSATIDENCVSLFFTETMEVAYLRDLLQIES
VSDERRDRFGLLQPNPKFFPLFRTNLTLHGLSLSQTEELNKDLNHLLLNS
QSVVSIQSRYWQRSRFPSDEEFFQDTFEAQKAACDVYQDITNLTNLTFPA
WAATAYVIGLVLEVRAAQGNETAAMMMLANHTSLVFNGVRCYRVSGSQLE
YPVSKMEQYMMTAKRLLDETNRIFKPDLRDIRMLSSAPSAYYSDLVTTLS
SLRSSGDSETVLITDGKITRLESVNDTLQVDLPNIELTSPTNMRPECPDG
YILASRAVPVVSMDELCCSEKCEFAELSLVDPFAFAINQERCCGLCNYLE
CTDHNLLPESTPLKYTGTPTLISI*

spliced messenger RNA

>Gcaud8253.t1 ID=Gcaud8253.t1|Name=Gcaud8253.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1275bp|location=Sequence derived from alignment at NODE_1514_length_10049_cov_4.962442:3533..4807+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATATGTTAAACTGTTATTCTTGGTTCTGACCTTCAATCATGTTTT
CGCTCAAACTTTTTGCACATCAACCATTGATCTCGAAACTTTTTTAACGA
GGTCTTTTCGGGCTAACGTGGATCTCATACGTCTAGGGGTCCCATCCGAA
ATTGTCAAGAGATACTACGACAAGGCAGTAATGGATATGACATTGACGTG
CAATTGTTCATCTGCAACCATCGATGAAAATTGTGTTTCTTTGTTCTTTA
CGGAAACTATGGAAGTTGCTTACCTGAGAGATTTGCTCCAAATTGAGTCA
GTTTCTGATGAAAGAAGAGATCGATTCGGGCTATTGCAGCCCAACCCCAA
GTTCTTTCCACTGTTTAGAACAAACTTGACTCTCCATGGTTTATCTCTCT
CGCAAACAGAAGAACTTAACAAGGATCTGAATCATCTTCTTCTGAATTCT
CAGTCTGTGGTCAGCATCCAATCACGATATTGGCAGAGATCTCGGTTTCC
CTCGGACGAAGAATTCTTTCAGGATACGTTTGAAGCTCAAAAAGCAGCAT
GTGATGTTTATCAAGATATCACCAACCTGACAAACCTCACATTTCCTGCG
TGGGCAGCAACAGCTTACGTCATTGGTCTTGTTCTCGAAGTTCGCGCAGC
TCAAGGAAACGAAACAGCGGCGATGATGATGCTGGCAAATCACACATCTC
TTGTTTTCAACGGAGTACGATGTTACCGCGTCAGTGGATCTCAGTTGGAA
TATCCAGTGAGCAAAATGGAGCAGTATATGATGACCGCGAAAAGGCTACT
CGACGAAACGAACAGGATCTTTAAGCCGGATCTGCGCGATATTCGTATGC
TTTCTTCGGCTCCCTCTGCGTACTACTCTGATTTGGTGACCACTCTTTCG
TCTCTCAGGTCCAGTGGAGACAGTGAAACTGTACTAATTACTGACGGAAA
AATAACTCGACTAGAATCGGTGAATGATACTCTACAAGTGGACTTGCCCA
ACATCGAGCTCACAAGCCCAACCAATATGCGGCCAGAATGTCCTGACGGG
TATATTTTGGCGTCAAGGGCCGTGCCTGTAGTGAGCATGGATGAGCTATG
CTGTTCGGAGAAATGTGAGTTTGCCGAACTGTCTTTAGTAGATCCATTTG
CTTTCGCGATCAACCAAGAACGCTGCTGTGGACTCTGCAACTATTTGGAA
TGTACCGACCACAATCTCCTTCCGGAATCAACACCACTCAAGTACACTGG
AACGCCTACGTTAATTTCCATCTAG

protein sequence of Gcaud8253.t1

>Gcaud8253.t1 ID=Gcaud8253.t1|Name=Gcaud8253.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=425bp
MGYVKLLFLVLTFNHVFAQTFCTSTIDLETFLTRSFRANVDLIRLGVPSE
IVKRYYDKAVMDMTLTCNCSSATIDENCVSLFFTETMEVAYLRDLLQIES
VSDERRDRFGLLQPNPKFFPLFRTNLTLHGLSLSQTEELNKDLNHLLLNS
QSVVSIQSRYWQRSRFPSDEEFFQDTFEAQKAACDVYQDITNLTNLTFPA
WAATAYVIGLVLEVRAAQGNETAAMMMLANHTSLVFNGVRCYRVSGSQLE
YPVSKMEQYMMTAKRLLDETNRIFKPDLRDIRMLSSAPSAYYSDLVTTLS
SLRSSGDSETVLITDGKITRLESVNDTLQVDLPNIELTSPTNMRPECPDG
YILASRAVPVVSMDELCCSEKCEFAELSLVDPFAFAINQERCCGLCNYLE
CTDHNLLPESTPLKYTGTPTLISI*

mRNA from alignment at NODE_1514_length_10049_cov_4.962442:3533..4807+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8253.t1 ID=Gcaud8253.t1|Name=Gcaud8253.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1275bp|location=Sequence derived from alignment at NODE_1514_length_10049_cov_4.962442:3533..4807+ (Gracilaria caudata M_176_S67 male)
ATGGGATATGTTAAACTGTTATTCTTGGTTCTGACCTTCAATCATGTTTT
CGCTCAAACTTTTTGCACATCAACCATTGATCTCGAAACTTTTTTAACGA
GGTCTTTTCGGGCTAACGTGGATCTCATACGTCTAGGGGTCCCATCCGAA
ATTGTCAAGAGATACTACGACAAGGCAGTAATGGATATGACATTGACGTG
CAATTGTTCATCTGCAACCATCGATGAAAATTGTGTTTCTTTGTTCTTTA
CGGAAACTATGGAAGTTGCTTACCTGAGAGATTTGCTCCAAATTGAGTCA
GTTTCTGATGAAAGAAGAGATCGATTCGGGCTATTGCAGCCCAACCCCAA
GTTCTTTCCACTGTTTAGAACAAACTTGACTCTCCATGGTTTATCTCTCT
CGCAAACAGAAGAACTTAACAAGGATCTGAATCATCTTCTTCTGAATTCT
CAGTCTGTGGTCAGCATCCAATCACGATATTGGCAGAGATCTCGGTTTCC
CTCGGACGAAGAATTCTTTCAGGATACGTTTGAAGCTCAAAAAGCAGCAT
GTGATGTTTATCAAGATATCACCAACCTGACAAACCTCACATTTCCTGCG
TGGGCAGCAACAGCTTACGTCATTGGTCTTGTTCTCGAAGTTCGCGCAGC
TCAAGGAAACGAAACAGCGGCGATGATGATGCTGGCAAATCACACATCTC
TTGTTTTCAACGGAGTACGATGTTACCGCGTCAGTGGATCTCAGTTGGAA
TATCCAGTGAGCAAAATGGAGCAGTATATGATGACCGCGAAAAGGCTACT
CGACGAAACGAACAGGATCTTTAAGCCGGATCTGCGCGATATTCGTATGC
TTTCTTCGGCTCCCTCTGCGTACTACTCTGATTTGGTGACCACTCTTTCG
TCTCTCAGGTCCAGTGGAGACAGTGAAACTGTACTAATTACTGACGGAAA
AATAACTCGACTAGAATCGGTGAATGATACTCTACAAGTGGACTTGCCCA
ACATCGAGCTCACAAGCCCAACCAATATGCGGCCAGAATGTCCTGACGGG
TATATTTTGGCGTCAAGGGCCGTGCCTGTAGTGAGCATGGATGAGCTATG
CTGTTCGGAGAAATGTGAGTTTGCCGAACTGTCTTTAGTAGATCCATTTG
CTTTCGCGATCAACCAAGAACGCTGCTGTGGACTCTGCAACTATTTGGAA
TGTACCGACCACAATCTCCTTCCGGAATCAACACCACTCAAGTACACTGG
AACGCCTACGTTAATTTCCATCTAG

Coding sequence (CDS) from alignment at NODE_1514_length_10049_cov_4.962442:3533..4807+

>Gcaud8253.t1 ID=Gcaud8253.t1|Name=Gcaud8253.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1275bp|location=Sequence derived from alignment at NODE_1514_length_10049_cov_4.962442:3533..4807+ (Gracilaria caudata M_176_S67 male)
ATGGGATATGTTAAACTGTTATTCTTGGTTCTGACCTTCAATCATGTTTT
CGCTCAAACTTTTTGCACATCAACCATTGATCTCGAAACTTTTTTAACGA
GGTCTTTTCGGGCTAACGTGGATCTCATACGTCTAGGGGTCCCATCCGAA
ATTGTCAAGAGATACTACGACAAGGCAGTAATGGATATGACATTGACGTG
CAATTGTTCATCTGCAACCATCGATGAAAATTGTGTTTCTTTGTTCTTTA
CGGAAACTATGGAAGTTGCTTACCTGAGAGATTTGCTCCAAATTGAGTCA
GTTTCTGATGAAAGAAGAGATCGATTCGGGCTATTGCAGCCCAACCCCAA
GTTCTTTCCACTGTTTAGAACAAACTTGACTCTCCATGGTTTATCTCTCT
CGCAAACAGAAGAACTTAACAAGGATCTGAATCATCTTCTTCTGAATTCT
CAGTCTGTGGTCAGCATCCAATCACGATATTGGCAGAGATCTCGGTTTCC
CTCGGACGAAGAATTCTTTCAGGATACGTTTGAAGCTCAAAAAGCAGCAT
GTGATGTTTATCAAGATATCACCAACCTGACAAACCTCACATTTCCTGCG
TGGGCAGCAACAGCTTACGTCATTGGTCTTGTTCTCGAAGTTCGCGCAGC
TCAAGGAAACGAAACAGCGGCGATGATGATGCTGGCAAATCACACATCTC
TTGTTTTCAACGGAGTACGATGTTACCGCGTCAGTGGATCTCAGTTGGAA
TATCCAGTGAGCAAAATGGAGCAGTATATGATGACCGCGAAAAGGCTACT
CGACGAAACGAACAGGATCTTTAAGCCGGATCTGCGCGATATTCGTATGC
TTTCTTCGGCTCCCTCTGCGTACTACTCTGATTTGGTGACCACTCTTTCG
TCTCTCAGGTCCAGTGGAGACAGTGAAACTGTACTAATTACTGACGGAAA
AATAACTCGACTAGAATCGGTGAATGATACTCTACAAGTGGACTTGCCCA
ACATCGAGCTCACAAGCCCAACCAATATGCGGCCAGAATGTCCTGACGGG
TATATTTTGGCGTCAAGGGCCGTGCCTGTAGTGAGCATGGATGAGCTATG
CTGTTCGGAGAAATGTGAGTTTGCCGAACTGTCTTTAGTAGATCCATTTG
CTTTCGCGATCAACCAAGAACGCTGCTGTGGACTCTGCAACTATTTGGAA
TGTACCGACCACAATCTCCTTCCGGAATCAACACCACTCAAGTACACTGG
AACGCCTACGTTAATTTCCATCTAG