Gcaud8252.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8252.t1
Unique Name	Gcaud8252.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	367

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1514_length_10049_cov_4.962442	contig	NODE_1514_length_10049_cov_4.962442:1849..2949 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMR475CT
PFAMs	GFO_IDH_MocA,GFO_IDH_MocA_C
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00182
KEGG ko	ko:K00010
KEGG Reaction	R01183,R09951
KEGG Pathway	ko00521,ko00562,ko01100,ko01120,ko01130,map00521,map00562,map01100,map01120,map01130
Evalue	3.91e-143
EggNOG OGs	COG0673@1\|root,KOG2741@2759\|Eukaryota
EC	1.1.1.18,1.1.1.369
Description	D-xylose 1-dehydrogenase (NADP ) activity
COG category	V
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8252	Gcaud8252	Gracilaria caudata M_176_S67 male	gene	NODE_1514_length_10049_cov_4.962442 1849..2949 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8252.t1.start1	Gcaud8252.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1514_length_10049_cov_4.962442 1849..1851 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8252.t1.CDS1	Gcaud8252.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1514_length_10049_cov_4.962442 1849..2949 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8252.t1.exon1	Gcaud8252.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1514_length_10049_cov_4.962442 1849..2949 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8252.t1.stop1	Gcaud8252.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1514_length_10049_cov_4.962442 2947..2949 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8252.t1	Gcaud8252.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1514_length_10049_cov_4.962442 1849..2949 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1514_length_10049_cov_4.962442:1849..2949+
coding sequence from alignment at NODE_1514_length_10049_cov_4.962442:1849..2949+

mRNA sequence

>Gcaud8252.t1 ID=Gcaud8252.t1|Name=Gcaud8252.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=367bp
MSLLSRVAVTGARLGRAMSTTAAPVRVGIIGAGRIGQVHAKAITAMHGAE
VATIADPFEKFGLAAAETFNTKYTPNWEDMLSDETIDGIVIGSPTPFHAE
QIVKSAEAGKAIMCEKPISNDLATIDKCLDVVEKTNARLLIGFQRRFDAN
FMEVSKQVSDGSIGEVRMFQINSRDPAPPPAEYLANSGGIFLDMMSHDFD
QARFCTGAEIEEVFVAGKAFEEAAQQANDLDTVLVMLKMSNGAIGTIGNS
RRCAYGYDQRIEVFGSTGMLSSNNRTPHTVNISNESSVSSPLPYSFFMDR
YALAYSGVMEAFVKMIREGTPPPVTGADGRAPIVAAMAANKSIKEGRPVR
LAEVDIVDASAQSAQA*

spliced messenger RNA

>Gcaud8252.t1 ID=Gcaud8252.t1|Name=Gcaud8252.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at NODE_1514_length_10049_cov_4.962442:1849..2949+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTTGCTTTCCCGTGTTGCTGTTACCGGAGCGCGTCTGGGCCGCGC
TATGTCTACAACAGCAGCCCCGGTCCGCGTTGGAATTATCGGTGCTGGTC
GTATTGGCCAGGTTCATGCCAAGGCGATTACCGCCATGCACGGTGCAGAG
GTTGCTACCATCGCCGATCCGTTCGAAAAGTTCGGTTTGGCCGCAGCGGA
AACATTCAACACCAAGTATACTCCGAATTGGGAAGATATGCTTTCTGACG
AAACAATTGATGGCATCGTCATTGGATCACCCACTCCCTTCCATGCCGAA
CAAATCGTTAAGAGTGCGGAAGCCGGGAAGGCAATCATGTGCGAGAAGCC
CATCTCCAATGATCTTGCCACTATCGACAAATGCCTTGATGTTGTCGAGA
AGACGAATGCCCGTTTGCTTATCGGATTCCAGCGCCGCTTCGATGCTAAC
TTCATGGAAGTGAGCAAGCAAGTGAGCGATGGAAGTATTGGTGAGGTGCG
AATGTTTCAGATAAACTCTCGTGATCCTGCTCCGCCACCAGCTGAATACC
TAGCCAATTCTGGAGGTATCTTCCTTGATATGATGAGCCACGACTTCGAC
CAGGCCAGATTCTGCACCGGTGCTGAAATCGAAGAAGTTTTCGTCGCTGG
AAAGGCATTCGAAGAGGCTGCGCAACAGGCAAATGACTTGGATACTGTTC
TCGTCATGCTCAAGATGTCTAACGGCGCAATTGGTACCATTGGTAACTCT
CGTCGATGTGCTTACGGATATGATCAACGCATTGAAGTGTTCGGTAGCAC
AGGAATGCTCTCCAGCAACAATAGAACCCCCCATACCGTCAACATCAGCA
ATGAAAGTTCCGTTTCTTCCCCACTCCCCTATTCGTTCTTCATGGACAGG
TATGCCCTTGCCTATTCAGGTGTCATGGAAGCGTTCGTAAAGATGATTCG
TGAAGGTACACCACCTCCAGTCACAGGTGCGGATGGTCGGGCACCTATTG
TAGCTGCAATGGCTGCCAACAAATCTATCAAAGAAGGTCGCCCGGTTCGT
CTGGCAGAAGTAGATATTGTAGACGCCTCTGCGCAATCAGCCCAAGCCTA
G

protein sequence of Gcaud8252.t1

>Gcaud8252.t1 ID=Gcaud8252.t1|Name=Gcaud8252.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=367bp
MSLLSRVAVTGARLGRAMSTTAAPVRVGIIGAGRIGQVHAKAITAMHGAE
VATIADPFEKFGLAAAETFNTKYTPNWEDMLSDETIDGIVIGSPTPFHAE
QIVKSAEAGKAIMCEKPISNDLATIDKCLDVVEKTNARLLIGFQRRFDAN
FMEVSKQVSDGSIGEVRMFQINSRDPAPPPAEYLANSGGIFLDMMSHDFD
QARFCTGAEIEEVFVAGKAFEEAAQQANDLDTVLVMLKMSNGAIGTIGNS
RRCAYGYDQRIEVFGSTGMLSSNNRTPHTVNISNESSVSSPLPYSFFMDR
YALAYSGVMEAFVKMIREGTPPPVTGADGRAPIVAAMAANKSIKEGRPVR
LAEVDIVDASAQSAQA*

mRNA from alignment at NODE_1514_length_10049_cov_4.962442:1849..2949+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8252.t1 ID=Gcaud8252.t1|Name=Gcaud8252.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at NODE_1514_length_10049_cov_4.962442:1849..2949+ (Gracilaria caudata M_176_S67 male)
ATGTCGTTGCTTTCCCGTGTTGCTGTTACCGGAGCGCGTCTGGGCCGCGC
TATGTCTACAACAGCAGCCCCGGTCCGCGTTGGAATTATCGGTGCTGGTC
GTATTGGCCAGGTTCATGCCAAGGCGATTACCGCCATGCACGGTGCAGAG
GTTGCTACCATCGCCGATCCGTTCGAAAAGTTCGGTTTGGCCGCAGCGGA
AACATTCAACACCAAGTATACTCCGAATTGGGAAGATATGCTTTCTGACG
AAACAATTGATGGCATCGTCATTGGATCACCCACTCCCTTCCATGCCGAA
CAAATCGTTAAGAGTGCGGAAGCCGGGAAGGCAATCATGTGCGAGAAGCC
CATCTCCAATGATCTTGCCACTATCGACAAATGCCTTGATGTTGTCGAGA
AGACGAATGCCCGTTTGCTTATCGGATTCCAGCGCCGCTTCGATGCTAAC
TTCATGGAAGTGAGCAAGCAAGTGAGCGATGGAAGTATTGGTGAGGTGCG
AATGTTTCAGATAAACTCTCGTGATCCTGCTCCGCCACCAGCTGAATACC
TAGCCAATTCTGGAGGTATCTTCCTTGATATGATGAGCCACGACTTCGAC
CAGGCCAGATTCTGCACCGGTGCTGAAATCGAAGAAGTTTTCGTCGCTGG
AAAGGCATTCGAAGAGGCTGCGCAACAGGCAAATGACTTGGATACTGTTC
TCGTCATGCTCAAGATGTCTAACGGCGCAATTGGTACCATTGGTAACTCT
CGTCGATGTGCTTACGGATATGATCAACGCATTGAAGTGTTCGGTAGCAC
AGGAATGCTCTCCAGCAACAATAGAACCCCCCATACCGTCAACATCAGCA
ATGAAAGTTCCGTTTCTTCCCCACTCCCCTATTCGTTCTTCATGGACAGG
TATGCCCTTGCCTATTCAGGTGTCATGGAAGCGTTCGTAAAGATGATTCG
TGAAGGTACACCACCTCCAGTCACAGGTGCGGATGGTCGGGCACCTATTG
TAGCTGCAATGGCTGCCAACAAATCTATCAAAGAAGGTCGCCCGGTTCGT
CTGGCAGAAGTAGATATTGTAGACGCCTCTGCGCAATCAGCCCAAGCCTA
G

Coding sequence (CDS) from alignment at NODE_1514_length_10049_cov_4.962442:1849..2949+

>Gcaud8252.t1 ID=Gcaud8252.t1|Name=Gcaud8252.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1101bp|location=Sequence derived from alignment at NODE_1514_length_10049_cov_4.962442:1849..2949+ (Gracilaria caudata M_176_S67 male)
ATGTCGTTGCTTTCCCGTGTTGCTGTTACCGGAGCGCGTCTGGGCCGCGC
TATGTCTACAACAGCAGCCCCGGTCCGCGTTGGAATTATCGGTGCTGGTC
GTATTGGCCAGGTTCATGCCAAGGCGATTACCGCCATGCACGGTGCAGAG
GTTGCTACCATCGCCGATCCGTTCGAAAAGTTCGGTTTGGCCGCAGCGGA
AACATTCAACACCAAGTATACTCCGAATTGGGAAGATATGCTTTCTGACG
AAACAATTGATGGCATCGTCATTGGATCACCCACTCCCTTCCATGCCGAA
CAAATCGTTAAGAGTGCGGAAGCCGGGAAGGCAATCATGTGCGAGAAGCC
CATCTCCAATGATCTTGCCACTATCGACAAATGCCTTGATGTTGTCGAGA
AGACGAATGCCCGTTTGCTTATCGGATTCCAGCGCCGCTTCGATGCTAAC
TTCATGGAAGTGAGCAAGCAAGTGAGCGATGGAAGTATTGGTGAGGTGCG
AATGTTTCAGATAAACTCTCGTGATCCTGCTCCGCCACCAGCTGAATACC
TAGCCAATTCTGGAGGTATCTTCCTTGATATGATGAGCCACGACTTCGAC
CAGGCCAGATTCTGCACCGGTGCTGAAATCGAAGAAGTTTTCGTCGCTGG
AAAGGCATTCGAAGAGGCTGCGCAACAGGCAAATGACTTGGATACTGTTC
TCGTCATGCTCAAGATGTCTAACGGCGCAATTGGTACCATTGGTAACTCT
CGTCGATGTGCTTACGGATATGATCAACGCATTGAAGTGTTCGGTAGCAC
AGGAATGCTCTCCAGCAACAATAGAACCCCCCATACCGTCAACATCAGCA
ATGAAAGTTCCGTTTCTTCCCCACTCCCCTATTCGTTCTTCATGGACAGG
TATGCCCTTGCCTATTCAGGTGTCATGGAAGCGTTCGTAAAGATGATTCG
TGAAGGTACACCACCTCCAGTCACAGGTGCGGATGGTCGGGCACCTATTG
TAGCTGCAATGGCTGCCAACAAATCTATCAAAGAAGGTCGCCCGGTTCGT
CTGGCAGAAGTAGATATTGTAGACGCCTCTGCGCAATCAGCCCAAGCCTA
G