Gcaud8251.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8251.t1
Unique Name	Gcaud8251.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	299

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_308_length_31041_cov_4.463651	contig	NODE_308_length_31041_cov_4.463651:30076..30972 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4641.GSMUA_Achr9P05160_001
PFAMs	zf-RING_2
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K16282
GOs	GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009628,GO:0009787,GO:0009789,GO:0009966,GO:0009967,GO:0009987,GO:0010498,GO:0010646,GO:0010647,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0023051,GO:0023056,GO:0030163,GO:0032446,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0047484,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0080134,GO:0080167,GO:0140096,GO:1901419,GO:1901421,GO:1901564,GO:1901565,GO:1901575,GO:1905957,GO:1905959
Evalue	7.08e-09
EggNOG OGs	KOG0800@1\|root,KOG0800@2759\|Eukaryota,37WFE@33090\|Viridiplantae,3GK7R@35493\|Streptophyta,3M1EF@4447\|Liliopsida
EC	2.3.2.27
Description	Ring finger domain
COG category	O
BRITE	ko00000,ko01000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8251	Gcaud8251	Gracilaria caudata M_176_S67 male	gene	NODE_308_length_31041_cov_4.463651 30076..30972 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8251.t1.start1	Gcaud8251.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_308_length_31041_cov_4.463651 30076..30078 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8251.t1.CDS1	Gcaud8251.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_308_length_31041_cov_4.463651 30076..30972 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8251.t1.exon1	Gcaud8251.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_308_length_31041_cov_4.463651 30076..30972 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8251.t1.stop1	Gcaud8251.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_308_length_31041_cov_4.463651 30970..30972 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8251.t1	Gcaud8251.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_308_length_31041_cov_4.463651 30076..30972 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_308_length_31041_cov_4.463651:30076..30972+
coding sequence from alignment at NODE_308_length_31041_cov_4.463651:30076..30972+

mRNA sequence

>Gcaud8251.t1 ID=Gcaud8251.t1|Name=Gcaud8251.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=299bp
MPRPIAILATLAVGTAARLLIPHLPFFRKRRNQEDPGTPQFEDVTDEEDA
THSEQDSATGLSLSSYRAGPSHTRRVPSQPKPVLCAADVLNLLETIAPRS
NLCHHSPSQCTFCLEDVKEGQLTRTTPCRHVFHANCLEQWALHATTKLMN
AGMYTVARDGVVRCSARFPSCPNCSSLLDVVPRPVWSFFLLSAVTSSLSL
SDNRHAARMYPSGMVVRDDVLRPMYVRIPVEESQEASDWIEAIDDDENSV
SSREDGFRQIGMTPLVTTPARTRAEQRGFGRTDTRLAYASQLSTGYDH*

spliced messenger RNA

>Gcaud8251.t1 ID=Gcaud8251.t1|Name=Gcaud8251.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=897bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:30076..30972+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCGTCCCATTGCCATTCTCGCTACTCTTGCCGTTGGAACGGCTGC
TCGTCTCCTTATCCCCCATCTTCCCTTCTTCCGCAAGCGCCGCAATCAAG
AAGACCCCGGAACCCCTCAATTCGAAGACGTCACCGATGAAGAGGATGCG
ACCCACTCCGAACAAGACTCTGCAACGGGTCTGTCCCTTTCCTCCTACCG
AGCTGGTCCGTCTCACACCCGCCGAGTGCCCTCGCAACCTAAGCCCGTCC
TCTGCGCGGCCGATGTTTTGAATTTACTGGAAACGATTGCCCCGCGATCA
AACCTATGCCATCACAGCCCATCCCAGTGCACCTTTTGCCTGGAAGACGT
CAAAGAGGGGCAGCTAACTCGAACCACTCCGTGCAGACACGTCTTCCACG
CCAACTGTTTGGAGCAATGGGCTCTGCACGCCACCACCAAACTGATGAAC
GCCGGAATGTATACCGTTGCGCGCGATGGCGTTGTGCGCTGCTCTGCCCG
TTTTCCGTCATGCCCCAACTGTTCCTCACTTCTGGACGTCGTACCGAGGC
CAGTATGGAGCTTTTTTCTACTCTCTGCCGTCACTTCCTCTCTCTCCCTT
TCTGACAATCGTCATGCCGCCAGGATGTATCCTTCAGGCATGGTGGTCCG
GGACGATGTGCTACGTCCCATGTATGTGCGCATTCCGGTTGAGGAAAGTC
AAGAAGCCTCGGATTGGATTGAAGCAATTGATGATGATGAAAATTCTGTA
TCATCCCGAGAGGATGGCTTTCGTCAGATTGGTATGACCCCTCTTGTTAC
TACCCCTGCACGAACCCGAGCCGAACAGCGTGGATTTGGCAGAACTGATA
CCCGTCTTGCATATGCCTCTCAGTTATCTACCGGTTATGACCACTAA

protein sequence of Gcaud8251.t1

>Gcaud8251.t1 ID=Gcaud8251.t1|Name=Gcaud8251.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=299bp
MPRPIAILATLAVGTAARLLIPHLPFFRKRRNQEDPGTPQFEDVTDEEDA
THSEQDSATGLSLSSYRAGPSHTRRVPSQPKPVLCAADVLNLLETIAPRS
NLCHHSPSQCTFCLEDVKEGQLTRTTPCRHVFHANCLEQWALHATTKLMN
AGMYTVARDGVVRCSARFPSCPNCSSLLDVVPRPVWSFFLLSAVTSSLSL
SDNRHAARMYPSGMVVRDDVLRPMYVRIPVEESQEASDWIEAIDDDENSV
SSREDGFRQIGMTPLVTTPARTRAEQRGFGRTDTRLAYASQLSTGYDH*

mRNA from alignment at NODE_308_length_31041_cov_4.463651:30076..30972+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8251.t1 ID=Gcaud8251.t1|Name=Gcaud8251.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=897bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:30076..30972+ (Gracilaria caudata M_176_S67 male)
ATGCCTCGTCCCATTGCCATTCTCGCTACTCTTGCCGTTGGAACGGCTGC
TCGTCTCCTTATCCCCCATCTTCCCTTCTTCCGCAAGCGCCGCAATCAAG
AAGACCCCGGAACCCCTCAATTCGAAGACGTCACCGATGAAGAGGATGCG
ACCCACTCCGAACAAGACTCTGCAACGGGTCTGTCCCTTTCCTCCTACCG
AGCTGGTCCGTCTCACACCCGCCGAGTGCCCTCGCAACCTAAGCCCGTCC
TCTGCGCGGCCGATGTTTTGAATTTACTGGAAACGATTGCCCCGCGATCA
AACCTATGCCATCACAGCCCATCCCAGTGCACCTTTTGCCTGGAAGACGT
CAAAGAGGGGCAGCTAACTCGAACCACTCCGTGCAGACACGTCTTCCACG
CCAACTGTTTGGAGCAATGGGCTCTGCACGCCACCACCAAACTGATGAAC
GCCGGAATGTATACCGTTGCGCGCGATGGCGTTGTGCGCTGCTCTGCCCG
TTTTCCGTCATGCCCCAACTGTTCCTCACTTCTGGACGTCGTACCGAGGC
CAGTATGGAGCTTTTTTCTACTCTCTGCCGTCACTTCCTCTCTCTCCCTT
TCTGACAATCGTCATGCCGCCAGGATGTATCCTTCAGGCATGGTGGTCCG
GGACGATGTGCTACGTCCCATGTATGTGCGCATTCCGGTTGAGGAAAGTC
AAGAAGCCTCGGATTGGATTGAAGCAATTGATGATGATGAAAATTCTGTA
TCATCCCGAGAGGATGGCTTTCGTCAGATTGGTATGACCCCTCTTGTTAC
TACCCCTGCACGAACCCGAGCCGAACAGCGTGGATTTGGCAGAACTGATA
CCCGTCTTGCATATGCCTCTCAGTTATCTACCGGTTATGACCACTAA

Coding sequence (CDS) from alignment at NODE_308_length_31041_cov_4.463651:30076..30972+

>Gcaud8251.t1 ID=Gcaud8251.t1|Name=Gcaud8251.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=897bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:30076..30972+ (Gracilaria caudata M_176_S67 male)
ATGCCTCGTCCCATTGCCATTCTCGCTACTCTTGCCGTTGGAACGGCTGC
TCGTCTCCTTATCCCCCATCTTCCCTTCTTCCGCAAGCGCCGCAATCAAG
AAGACCCCGGAACCCCTCAATTCGAAGACGTCACCGATGAAGAGGATGCG
ACCCACTCCGAACAAGACTCTGCAACGGGTCTGTCCCTTTCCTCCTACCG
AGCTGGTCCGTCTCACACCCGCCGAGTGCCCTCGCAACCTAAGCCCGTCC
TCTGCGCGGCCGATGTTTTGAATTTACTGGAAACGATTGCCCCGCGATCA
AACCTATGCCATCACAGCCCATCCCAGTGCACCTTTTGCCTGGAAGACGT
CAAAGAGGGGCAGCTAACTCGAACCACTCCGTGCAGACACGTCTTCCACG
CCAACTGTTTGGAGCAATGGGCTCTGCACGCCACCACCAAACTGATGAAC
GCCGGAATGTATACCGTTGCGCGCGATGGCGTTGTGCGCTGCTCTGCCCG
TTTTCCGTCATGCCCCAACTGTTCCTCACTTCTGGACGTCGTACCGAGGC
CAGTATGGAGCTTTTTTCTACTCTCTGCCGTCACTTCCTCTCTCTCCCTT
TCTGACAATCGTCATGCCGCCAGGATGTATCCTTCAGGCATGGTGGTCCG
GGACGATGTGCTACGTCCCATGTATGTGCGCATTCCGGTTGAGGAAAGTC
AAGAAGCCTCGGATTGGATTGAAGCAATTGATGATGATGAAAATTCTGTA
TCATCCCGAGAGGATGGCTTTCGTCAGATTGGTATGACCCCTCTTGTTAC
TACCCCTGCACGAACCCGAGCCGAACAGCGTGGATTTGGCAGAACTGATA
CCCGTCTTGCATATGCCTCTCAGTTATCTACCGGTTATGACCACTAA