Gcaud8246.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8246.t1
Unique NameGcaud8246.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length163
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_308_length_31041_cov_4.463651contigNODE_308_length_31041_cov_4.463651:18260..18748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8246Gcaud8246Gracilaria caudata M_176_S67 malegeneNODE_308_length_31041_cov_4.463651 18260..18748 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8246.t1.stop1Gcaud8246.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_308_length_31041_cov_4.463651 18260..18262 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8246.t1.CDS1Gcaud8246.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_308_length_31041_cov_4.463651 18260..18748 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8246.t1.exon1Gcaud8246.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_308_length_31041_cov_4.463651 18260..18748 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8246.t1.start1Gcaud8246.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_308_length_31041_cov_4.463651 18746..18748 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8246.t1Gcaud8246.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_308_length_31041_cov_4.463651 18260..18748 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8246.t1 ID=Gcaud8246.t1|Name=Gcaud8246.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=163bp
MKFSILAAVFAAAFAVICAQSENVIRQSMSPSKCSCRMPSSVKSGYTSDT
TPVFKAEAVENRATGDPNYEYTVMRVKVTFRGCAPSNEYILVKSPKSACG
VKFVPGVMYAVTAKLCRSATPPPGLPASMETYTATSCSYNKPWKSCPYND
KVFLYYSPVAGC*
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spliced messenger RNA

>Gcaud8246.t1 ID=Gcaud8246.t1|Name=Gcaud8246.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=489bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:18260..18748- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTTTCGATTCTTGCTGCTGTGTTCGCAGCAGCTTTCGCCGTTAT
CTGCGCTCAGTCTGAGAATGTGATTCGCCAATCTATGTCTCCTTCAAAGT
GCTCCTGCAGGATGCCATCCAGCGTCAAGAGTGGATACACTAGCGACACT
ACTCCTGTTTTTAAGGCAGAGGCTGTCGAGAATCGTGCAACTGGAGACCC
GAACTATGAGTACACCGTGATGCGTGTTAAGGTTACCTTCCGTGGTTGTG
CGCCTTCAAACGAATACATCTTGGTCAAATCACCGAAGTCCGCTTGTGGT
GTCAAATTCGTTCCTGGAGTCATGTACGCCGTGACCGCCAAGTTGTGCCG
TTCTGCCACGCCACCGCCTGGTCTCCCCGCTTCAATGGAGACCTACACCG
CGACTTCCTGCAGCTACAACAAGCCTTGGAAGTCGTGTCCTTACAACGAT
AAAGTGTTTCTGTACTACAGCCCTGTCGCAGGCTGCTAA
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protein sequence of Gcaud8246.t1

>Gcaud8246.t1 ID=Gcaud8246.t1|Name=Gcaud8246.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=163bp
MKFSILAAVFAAAFAVICAQSENVIRQSMSPSKCSCRMPSSVKSGYTSDT
TPVFKAEAVENRATGDPNYEYTVMRVKVTFRGCAPSNEYILVKSPKSACG
VKFVPGVMYAVTAKLCRSATPPPGLPASMETYTATSCSYNKPWKSCPYND
KVFLYYSPVAGC*
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mRNA from alignment at NODE_308_length_31041_cov_4.463651:18260..18748-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8246.t1 ID=Gcaud8246.t1|Name=Gcaud8246.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=489bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:18260..18748- (Gracilaria caudata M_176_S67 male)
ATGAAGTTTTCGATTCTTGCTGCTGTGTTCGCAGCAGCTTTCGCCGTTAT
CTGCGCTCAGTCTGAGAATGTGATTCGCCAATCTATGTCTCCTTCAAAGT
GCTCCTGCAGGATGCCATCCAGCGTCAAGAGTGGATACACTAGCGACACT
ACTCCTGTTTTTAAGGCAGAGGCTGTCGAGAATCGTGCAACTGGAGACCC
GAACTATGAGTACACCGTGATGCGTGTTAAGGTTACCTTCCGTGGTTGTG
CGCCTTCAAACGAATACATCTTGGTCAAATCACCGAAGTCCGCTTGTGGT
GTCAAATTCGTTCCTGGAGTCATGTACGCCGTGACCGCCAAGTTGTGCCG
TTCTGCCACGCCACCGCCTGGTCTCCCCGCTTCAATGGAGACCTACACCG
CGACTTCCTGCAGCTACAACAAGCCTTGGAAGTCGTGTCCTTACAACGAT
AAAGTGTTTCTGTACTACAGCCCTGTCGCAGGCTGCTAA
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Coding sequence (CDS) from alignment at NODE_308_length_31041_cov_4.463651:18260..18748-

>Gcaud8246.t1 ID=Gcaud8246.t1|Name=Gcaud8246.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=489bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:18260..18748- (Gracilaria caudata M_176_S67 male)
ATGAAGTTTTCGATTCTTGCTGCTGTGTTCGCAGCAGCTTTCGCCGTTAT
CTGCGCTCAGTCTGAGAATGTGATTCGCCAATCTATGTCTCCTTCAAAGT
GCTCCTGCAGGATGCCATCCAGCGTCAAGAGTGGATACACTAGCGACACT
ACTCCTGTTTTTAAGGCAGAGGCTGTCGAGAATCGTGCAACTGGAGACCC
GAACTATGAGTACACCGTGATGCGTGTTAAGGTTACCTTCCGTGGTTGTG
CGCCTTCAAACGAATACATCTTGGTCAAATCACCGAAGTCCGCTTGTGGT
GTCAAATTCGTTCCTGGAGTCATGTACGCCGTGACCGCCAAGTTGTGCCG
TTCTGCCACGCCACCGCCTGGTCTCCCCGCTTCAATGGAGACCTACACCG
CGACTTCCTGCAGCTACAACAAGCCTTGGAAGTCGTGTCCTTACAACGAT
AAAGTGTTTCTGTACTACAGCCCTGTCGCAGGCTGCTAA
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