Gcaud8245.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8245.t1
Unique Name	Gcaud8245.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	328

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_308_length_31041_cov_4.463651	contig	NODE_308_length_31041_cov_4.463651:16513..17496 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	192875.XP_004364279.1
Preferred name	DEPTOR
PFAMs	DEP
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K20402
KEGG Pathway	ko04140,ko04150,map04140,map04150
GOs	GO:0001932,GO:0001933,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006469,GO:0008150,GO:0008361,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0010941,GO:0016043,GO:0019220,GO:0019222,GO:0023051,GO:0023057,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032006,GO:0032007,GO:0032268,GO:0032269,GO:0032535,GO:0033673,GO:0042325,GO:0042326,GO:0042981,GO:0043067,GO:0043086,GO:0043549,GO:0044092,GO:0044424,GO:0044464,GO:0045792,GO:0045859,GO:0045936,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0071840,GO:0080090,GO:0090066,GO:1902531,GO:1902532,GO:2001233,GO:2001236
Evalue	6.41e-16
EggNOG OGs	28JRH@1\|root,2QS4Y@2759\|Eukaryota
Description	negative regulation of cell size
COG category	S
BRITE	ko00000,ko00001,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8245	Gcaud8245	Gracilaria caudata M_176_S67 male	gene	NODE_308_length_31041_cov_4.463651 16513..17496 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8245.t1.start1	Gcaud8245.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_308_length_31041_cov_4.463651 16513..16515 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8245.t1.CDS1	Gcaud8245.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_308_length_31041_cov_4.463651 16513..17496 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8245.t1.exon1	Gcaud8245.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_308_length_31041_cov_4.463651 16513..17496 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8245.t1.stop1	Gcaud8245.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_308_length_31041_cov_4.463651 17494..17496 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8245.t1	Gcaud8245.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_308_length_31041_cov_4.463651 16513..17496 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_308_length_31041_cov_4.463651:16513..17496+
coding sequence from alignment at NODE_308_length_31041_cov_4.463651:16513..17496+

mRNA sequence

>Gcaud8245.t1 ID=Gcaud8245.t1|Name=Gcaud8245.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=328bp
MAAKGSGIFLYVQVRITGVVQPMLVPKMLNQVQVGDRQFLFRRYKRCFSG
TDAVRFFLAKRFARNEHEAVAIGNALLKAGVFRHVRNEHLFRNGEYFYRF
AAHEDYAVEDESVNLRSSRMMSVACNSYMRMPEISRVDTGPVMSSSNYSD
ATFFSYEDYSMTDDRPEFDETDIIVETGIRIGTRVFPNLVSNFTHAKDLI
GTNANKGKILEKSFTGRAAVKWLVRHRYAKNNLEAISIGNAMLSSGVFYP
LENDADSGFDANLIHYRMMADTDLSKELRRGARKDMFLRLLGVNRAKSGA
SVHQQQTPWFEDPISFSFTSTSSGGFR*

spliced messenger RNA

>Gcaud8245.t1 ID=Gcaud8245.t1|Name=Gcaud8245.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=984bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:16513..17496+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCAAAGGGTTCTGGAATCTTTTTGTACGTGCAAGTTCGCATCAC
CGGTGTTGTGCAGCCGATGCTCGTGCCGAAGATGTTGAATCAAGTTCAAG
TGGGTGATAGACAGTTTCTCTTCCGACGATATAAGCGGTGCTTCTCCGGT
ACCGACGCGGTGCGCTTCTTTCTGGCTAAACGTTTTGCCCGCAATGAGCA
CGAAGCTGTGGCAATTGGCAATGCGTTGCTTAAGGCCGGCGTGTTTCGAC
ATGTTAGGAATGAACATCTTTTCCGGAATGGCGAGTACTTTTACAGATTT
GCTGCTCATGAGGACTACGCAGTCGAGGACGAAAGCGTCAATCTCAGGAG
TTCGCGAATGATGAGCGTTGCTTGCAACTCTTACATGAGAATGCCGGAGA
TTTCCCGCGTTGATACTGGTCCAGTTATGTCTAGCTCCAATTACAGTGAT
GCCACTTTCTTTTCGTATGAAGATTATTCAATGACCGATGATCGGCCGGA
GTTTGACGAGACCGACATTATTGTTGAGACTGGAATTCGTATCGGAACCA
GAGTGTTTCCCAATCTTGTGTCTAACTTCACGCATGCAAAAGACCTAATC
GGAACTAACGCTAACAAAGGAAAAATCCTCGAGAAGTCCTTCACAGGGAG
AGCTGCTGTCAAATGGCTTGTTCGGCACAGATACGCGAAGAACAATTTGG
AGGCTATCAGCATTGGCAACGCCATGCTTTCCTCTGGTGTTTTCTATCCA
CTGGAAAACGATGCCGATTCTGGCTTTGATGCGAACTTGATTCATTATCG
AATGATGGCAGACACCGATTTATCCAAGGAGCTTAGAAGAGGTGCCCGCA
AGGACATGTTTTTGAGATTGCTTGGAGTGAACAGGGCCAAGTCAGGCGCC
AGCGTACATCAGCAACAAACGCCATGGTTTGAGGATCCTATATCCTTTTC
TTTCACATCAACAAGTAGCGGCGGCTTCCGTTAA

protein sequence of Gcaud8245.t1

>Gcaud8245.t1 ID=Gcaud8245.t1|Name=Gcaud8245.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=328bp
MAAKGSGIFLYVQVRITGVVQPMLVPKMLNQVQVGDRQFLFRRYKRCFSG
TDAVRFFLAKRFARNEHEAVAIGNALLKAGVFRHVRNEHLFRNGEYFYRF
AAHEDYAVEDESVNLRSSRMMSVACNSYMRMPEISRVDTGPVMSSSNYSD
ATFFSYEDYSMTDDRPEFDETDIIVETGIRIGTRVFPNLVSNFTHAKDLI
GTNANKGKILEKSFTGRAAVKWLVRHRYAKNNLEAISIGNAMLSSGVFYP
LENDADSGFDANLIHYRMMADTDLSKELRRGARKDMFLRLLGVNRAKSGA
SVHQQQTPWFEDPISFSFTSTSSGGFR*

mRNA from alignment at NODE_308_length_31041_cov_4.463651:16513..17496+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8245.t1 ID=Gcaud8245.t1|Name=Gcaud8245.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=984bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:16513..17496+ (Gracilaria caudata M_176_S67 male)
ATGGCTGCAAAGGGTTCTGGAATCTTTTTGTACGTGCAAGTTCGCATCAC
CGGTGTTGTGCAGCCGATGCTCGTGCCGAAGATGTTGAATCAAGTTCAAG
TGGGTGATAGACAGTTTCTCTTCCGACGATATAAGCGGTGCTTCTCCGGT
ACCGACGCGGTGCGCTTCTTTCTGGCTAAACGTTTTGCCCGCAATGAGCA
CGAAGCTGTGGCAATTGGCAATGCGTTGCTTAAGGCCGGCGTGTTTCGAC
ATGTTAGGAATGAACATCTTTTCCGGAATGGCGAGTACTTTTACAGATTT
GCTGCTCATGAGGACTACGCAGTCGAGGACGAAAGCGTCAATCTCAGGAG
TTCGCGAATGATGAGCGTTGCTTGCAACTCTTACATGAGAATGCCGGAGA
TTTCCCGCGTTGATACTGGTCCAGTTATGTCTAGCTCCAATTACAGTGAT
GCCACTTTCTTTTCGTATGAAGATTATTCAATGACCGATGATCGGCCGGA
GTTTGACGAGACCGACATTATTGTTGAGACTGGAATTCGTATCGGAACCA
GAGTGTTTCCCAATCTTGTGTCTAACTTCACGCATGCAAAAGACCTAATC
GGAACTAACGCTAACAAAGGAAAAATCCTCGAGAAGTCCTTCACAGGGAG
AGCTGCTGTCAAATGGCTTGTTCGGCACAGATACGCGAAGAACAATTTGG
AGGCTATCAGCATTGGCAACGCCATGCTTTCCTCTGGTGTTTTCTATCCA
CTGGAAAACGATGCCGATTCTGGCTTTGATGCGAACTTGATTCATTATCG
AATGATGGCAGACACCGATTTATCCAAGGAGCTTAGAAGAGGTGCCCGCA
AGGACATGTTTTTGAGATTGCTTGGAGTGAACAGGGCCAAGTCAGGCGCC
AGCGTACATCAGCAACAAACGCCATGGTTTGAGGATCCTATATCCTTTTC
TTTCACATCAACAAGTAGCGGCGGCTTCCGTTAA

Coding sequence (CDS) from alignment at NODE_308_length_31041_cov_4.463651:16513..17496+

>Gcaud8245.t1 ID=Gcaud8245.t1|Name=Gcaud8245.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=984bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:16513..17496+ (Gracilaria caudata M_176_S67 male)
ATGGCTGCAAAGGGTTCTGGAATCTTTTTGTACGTGCAAGTTCGCATCAC
CGGTGTTGTGCAGCCGATGCTCGTGCCGAAGATGTTGAATCAAGTTCAAG
TGGGTGATAGACAGTTTCTCTTCCGACGATATAAGCGGTGCTTCTCCGGT
ACCGACGCGGTGCGCTTCTTTCTGGCTAAACGTTTTGCCCGCAATGAGCA
CGAAGCTGTGGCAATTGGCAATGCGTTGCTTAAGGCCGGCGTGTTTCGAC
ATGTTAGGAATGAACATCTTTTCCGGAATGGCGAGTACTTTTACAGATTT
GCTGCTCATGAGGACTACGCAGTCGAGGACGAAAGCGTCAATCTCAGGAG
TTCGCGAATGATGAGCGTTGCTTGCAACTCTTACATGAGAATGCCGGAGA
TTTCCCGCGTTGATACTGGTCCAGTTATGTCTAGCTCCAATTACAGTGAT
GCCACTTTCTTTTCGTATGAAGATTATTCAATGACCGATGATCGGCCGGA
GTTTGACGAGACCGACATTATTGTTGAGACTGGAATTCGTATCGGAACCA
GAGTGTTTCCCAATCTTGTGTCTAACTTCACGCATGCAAAAGACCTAATC
GGAACTAACGCTAACAAAGGAAAAATCCTCGAGAAGTCCTTCACAGGGAG
AGCTGCTGTCAAATGGCTTGTTCGGCACAGATACGCGAAGAACAATTTGG
AGGCTATCAGCATTGGCAACGCCATGCTTTCCTCTGGTGTTTTCTATCCA
CTGGAAAACGATGCCGATTCTGGCTTTGATGCGAACTTGATTCATTATCG
AATGATGGCAGACACCGATTTATCCAAGGAGCTTAGAAGAGGTGCCCGCA
AGGACATGTTTTTGAGATTGCTTGGAGTGAACAGGGCCAAGTCAGGCGCC
AGCGTACATCAGCAACAAACGCCATGGTTTGAGGATCCTATATCCTTTTC
TTTCACATCAACAAGTAGCGGCGGCTTCCGTTAA