Gcaud82.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud82.t1
Unique NameGcaud82.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length144
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_7715_length_867_cov_4.940722contigNODE_7715_length_867_cov_4.940722:253..684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud82Gcaud82Gracilaria caudata M_176_S67 malegeneNODE_7715_length_867_cov_4.940722 253..684 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud82.t1.stop1Gcaud82.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_7715_length_867_cov_4.940722 253..255 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud82.t1.CDS1Gcaud82.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_7715_length_867_cov_4.940722 253..684 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud82.t1.exon1Gcaud82.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_7715_length_867_cov_4.940722 253..684 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud82.t1.start1Gcaud82.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_7715_length_867_cov_4.940722 682..684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud82.t1Gcaud82.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_7715_length_867_cov_4.940722 253..684 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud82.t1 ID=Gcaud82.t1|Name=Gcaud82.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=144bp
MRRFKQWKHISSLNLASLLLEIEGEQQEAVTVLEDLMTTDLRLIAMLNLA
YILMNDVHGVTKDVTRGMQLLEDAVKESNDVSARAMLANALSKASGSDAG
DVERGWKLWQSVEEDVQGEEELRKVRRLISESCEEKWVTHGFQ*
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spliced messenger RNA

>Gcaud82.t1 ID=Gcaud82.t1|Name=Gcaud82.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=432bp|location=Sequence derived from alignment at NODE_7715_length_867_cov_4.940722:253..684- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGAGGTTCAAACAATGGAAGCACATTAGTTCTCTAAATCTGGCTAG
CCTCCTACTTGAGATTGAAGGAGAACAGCAGGAAGCTGTTACAGTCCTGG
AAGATCTGATGACCACTGACTTGAGGTTGATCGCTATGTTGAACCTGGCA
TATATCTTAATGAACGACGTACATGGAGTGACGAAGGACGTGACAAGAGG
AATGCAGCTTCTGGAAGATGCAGTGAAAGAATCAAACGACGTTTCTGCTC
GAGCGATGCTGGCCAACGCGTTGTCTAAAGCATCGGGCTCTGATGCCGGC
GACGTGGAAAGGGGATGGAAACTGTGGCAAAGCGTGGAGGAAGACGTGCA
AGGGGAGGAGGAGCTGCGAAAGGTTCGGCGGCTTATTTCAGAGAGTTGCG
AAGAGAAGTGGGTCACACATGGCTTTCAATGA
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protein sequence of Gcaud82.t1

>Gcaud82.t1 ID=Gcaud82.t1|Name=Gcaud82.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=144bp
MRRFKQWKHISSLNLASLLLEIEGEQQEAVTVLEDLMTTDLRLIAMLNLA
YILMNDVHGVTKDVTRGMQLLEDAVKESNDVSARAMLANALSKASGSDAG
DVERGWKLWQSVEEDVQGEEELRKVRRLISESCEEKWVTHGFQ*
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mRNA from alignment at NODE_7715_length_867_cov_4.940722:253..684-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud82.t1 ID=Gcaud82.t1|Name=Gcaud82.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=432bp|location=Sequence derived from alignment at NODE_7715_length_867_cov_4.940722:253..684- (Gracilaria caudata M_176_S67 male)
ATGAGGAGGTTCAAACAATGGAAGCACATTAGTTCTCTAAATCTGGCTAG
CCTCCTACTTGAGATTGAAGGAGAACAGCAGGAAGCTGTTACAGTCCTGG
AAGATCTGATGACCACTGACTTGAGGTTGATCGCTATGTTGAACCTGGCA
TATATCTTAATGAACGACGTACATGGAGTGACGAAGGACGTGACAAGAGG
AATGCAGCTTCTGGAAGATGCAGTGAAAGAATCAAACGACGTTTCTGCTC
GAGCGATGCTGGCCAACGCGTTGTCTAAAGCATCGGGCTCTGATGCCGGC
GACGTGGAAAGGGGATGGAAACTGTGGCAAAGCGTGGAGGAAGACGTGCA
AGGGGAGGAGGAGCTGCGAAAGGTTCGGCGGCTTATTTCAGAGAGTTGCG
AAGAGAAGTGGGTCACACATGGCTTTCAATGA
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Coding sequence (CDS) from alignment at NODE_7715_length_867_cov_4.940722:253..684-

>Gcaud82.t1 ID=Gcaud82.t1|Name=Gcaud82.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=432bp|location=Sequence derived from alignment at NODE_7715_length_867_cov_4.940722:253..684- (Gracilaria caudata M_176_S67 male)
ATGAGGAGGTTCAAACAATGGAAGCACATTAGTTCTCTAAATCTGGCTAG
CCTCCTACTTGAGATTGAAGGAGAACAGCAGGAAGCTGTTACAGTCCTGG
AAGATCTGATGACCACTGACTTGAGGTTGATCGCTATGTTGAACCTGGCA
TATATCTTAATGAACGACGTACATGGAGTGACGAAGGACGTGACAAGAGG
AATGCAGCTTCTGGAAGATGCAGTGAAAGAATCAAACGACGTTTCTGCTC
GAGCGATGCTGGCCAACGCGTTGTCTAAAGCATCGGGCTCTGATGCCGGC
GACGTGGAAAGGGGATGGAAACTGTGGCAAAGCGTGGAGGAAGACGTGCA
AGGGGAGGAGGAGCTGCGAAAGGTTCGGCGGCTTATTTCAGAGAGTTGCG
AAGAGAAGTGGGTCACACATGGCTTTCAATGA
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